Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007244

Physical Location & Seq

Genomic Coordinates Forward (+)

8770568 .. 8773979

Gene Structure 3412 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGAGTACCATGGACGATAGAGGAGGAGGCTCATTCGTCGCCGTTCGAAGGATTTCTCAAGGTCTCGACCGCGGCGGCAACACCTGCCATTCAACTTCTGCGGAAGTTGTAGCAGGATCAGCAGCATGGCTCGGCCGAGGTCTTTCTTGTGTGTGTGCACAGAGAAGAGAGAGTGATCCTCGTCCTTCCTTTGATTTAACCCCTGTCCAGGAGGAATGCTTGATTAGACTCCAGAGCCGTATAGATGTTTCCTATGACAGTTCAGTTCCTGAGCATCAGGAAGCTTTGAGGGCCTTGTGGAGTGCTGCCTTTCCCGAAGAAGAACTTTGTGGTTTAATATCTGAGCAATGGAAAGAAATGGGTTGGCAAGGGAAAGATCCATCAACAGACTTTAGGGGTGGTGGTTTTATTTCATTGGAGAATTTGTTGTTCTTTGCTAGGAGTTTCCCTAAATCTTTCCAGGATCTTCTTCGAAAGCAAGAAGGTGATAGGTCAGTGTGGGAATACCCATTTGCGGTTGCTGGTGTGAATATCACATTCATGCTCATTCAAATGCTCGATCTTGAAGCTGTCAAACCACGAACACTGGTGGGAGCTACTTTCTTGAAGTTTCTTGCAGAAAATGAATCAGCGTTCGATCTATCTATTGCATCACATTCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

222

Amino Acids

24.47

Weight (kDa)

4.98

Isoelectric Point (pI)

61.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	77 - 212	1.3e-41	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44770 AT3G60260 AT3G60260 AT3G60260 AT3G60260
fragaria_vesca	FvH4_7g10390 FvH4_7g10390 FvH4_7g10390 FvH4_7g10390
malus_domestica	MD00G1102900.v1.1 MD07G1110100.v1.1
prunus_persica	Prupe.2G133600_v2.0.a1 Prupe.2G133600_v2.0.a1
pyrus_communis	pycom07g09500 pycom12646g00160
rosa_chinensis	RchiOBHm_Chr1g0348091
rosa_laevigata	RLG00000028690
rosa_multiflora	Rmu_sc0005046.1_g000009
rosa_roxburghii	Rroxscaffold_4G00307240
rosa_rugosa	Rorug01G0192400
rosa_samantha	Rh1AG210100 Rh1BG175700 Rh1CG194700 Rh1DG205500
rosa_wichuraiana	Rw1G017540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	92
AccII	CGCG	1 cut(s)	72
AciI	CCGC	5 cut(s)	70, 72, 75, 101, 515
AclWI	GGATC	4 cut(s)	124, 170, 371, 471
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	421
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	3 cut(s)	48, 208, 514
AgsI	TTSAA	5 cut(s)	93, 551, 566, 607, 660
AjnI	CCWGG	2 cut(s)	207, 459
AluBI	AGCT	4 cut(s)	284, 569, 596, 663
AluI	AGCT	4 cut(s)	284, 569, 596, 663
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	68
Alw44I	GTGCAC	1 cut(s)	156
AlwI	GGATC	4 cut(s)	124, 170, 371, 471
AlwNI	CAGNNNCTG	1 cut(s)	269
AoxI	GGCC	2 cut(s)	133, 291
ApaLI	GTGCAC	1 cut(s)	156
ApeKI	GCWGC	2 cut(s)	122, 305
ApoI	RAATTY	1 cut(s)	421
Asp700I	GAANNNNTTC	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	497
AsuII	TTCGAA	2 cut(s)	46, 472
BaeGI	GKGCMC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	2 cut(s)	134, 292
BccI	CCATC	1 cut(s)	388
BceAI	ACGGC	2 cut(s)	26, 222
BciT130I	CCWGG	2 cut(s)	209, 461
BcoDI	GTCTC	1 cut(s)	68
BfaI	CTAG	1 cut(s)	438
BfuAI	ACCTGC	1 cut(s)	92
BisI	GCNGC	4 cut(s)	73, 76, 123, 306
BlsI	GCNGC	4 cut(s)	74, 77, 124, 307
Bme1390I	CCNGG	2 cut(s)	209, 461
BmgT120I	GGNCC	1 cut(s)	291
BmrFI	CCNGG	2 cut(s)	209, 461
BmsI	GCATC	2 cut(s)	283, 659
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
BpmI	CTGGAG	1 cut(s)	215
Bpu10I	CCTNAGC	1 cut(s)	270
Bpu14I	TTCGAA	2 cut(s)	46, 472
BpuEI	CTTGAG	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	3 cut(s)	9, 70, 136
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 208, 514
Bse1I	ACTGG	1 cut(s)	591
Bse3DI	GCAATG	1 cut(s)	353
BseBI	CCWGG	2 cut(s)	209, 461
BseDI	CCNNGG	3 cut(s)	9, 70, 136
BseLI	CCNNNNNNNGG	3 cut(s)	48, 208, 514
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	2 cut(s)	261, 333
BseNI	ACTGG	1 cut(s)	591
BseRI	GAGGAG	2 cut(s)	36, 39
BseSI	GKGCMC	1 cut(s)	160
BseX3I	CGGCCG	1 cut(s)	133
BseXI	GCAGC	2 cut(s)	134, 292
Bsh1236I	CGCG	1 cut(s)	72
Bsh1285I	CGRYCG	2 cut(s)	70, 136
BshFI	GGCC	2 cut(s)	135, 293
BsiEI	CGRYCG	2 cut(s)	70, 136
BsiHKAI	GWGCWC	1 cut(s)	160
BslI	CCNNNNNNNGG	3 cut(s)	48, 208, 514
BsmAI	GTCTC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	221
BsnI	GGCC	2 cut(s)	135, 293
Bso31I	GGTCTC	1 cut(s)	68
Bsp119I	TTCGAA	2 cut(s)	46, 472
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	6 cut(s)	116, 175, 376, 463, 559, 637
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	5 cut(s)	70, 72, 75, 101, 515
BspANI	GGCC	2 cut(s)	135, 293
BspCNI	CTCAG	2 cut(s)	262, 334
BspFNI	CGCG	1 cut(s)	72
BspMI	ACCTGC	1 cut(s)	92
BspPI	GGATC	4 cut(s)	124, 170, 371, 471
BspT104I	TTCGAA	2 cut(s)	46, 472
BspTNI	GGTCTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	591
BssECI	CCNNGG	3 cut(s)	9, 70, 136
BssMI	GATC	6 cut(s)	116, 175, 376, 463, 559, 637
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	2 cut(s)	209, 461
Bst4CI	ACNGT	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	160
BstAPI	GCANNNNNTGC	1 cut(s)	84
BstBI	TTCGAA	2 cut(s)	46, 472
BstDEI	CTNAG	2 cut(s)	270, 342
BstDSI	CCRYGG	2 cut(s)	9, 70
BstFNI	CGCG	1 cut(s)	72
BstKTI	GATC	6 cut(s)	119, 178, 379, 466, 562, 640
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	6 cut(s)	116, 175, 376, 463, 559, 637
BstMCI	CGRYCG	2 cut(s)	70, 136
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 119, 290
BstNI	CCWGG	2 cut(s)	209, 461
BstSCI	CCNGG	2 cut(s)	207, 459
BstSLI	GKGCMC	1 cut(s)	160
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	134, 292
BstX2I	RGATCY	2 cut(s)	376, 463
BstYI	RGATCY	2 cut(s)	376, 463
BstZI	CGGCCG	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	135, 293
BtgI	CCRYGG	2 cut(s)	9, 70
BtsIMutI	CAGTG	2 cut(s)	501, 584
BveI	ACCTGC	1 cut(s)	92
CaiI	CAGNNNCTG	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	291
Cfr42I	CCGCGG	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	3 cut(s)	10, 126, 541
CviJI	RGCY	9 cut(s)	30, 130, 135, 237, 284, 293, 569, 596, 663
CviKI_1	RGCY	9 cut(s)	30, 130, 135, 237, 284, 293, 569, 596, 663
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	2 cut(s)	270, 342
DpnI	GATC	6 cut(s)	118, 177, 378, 465, 561, 639
DpnII	GATC	6 cut(s)	116, 175, 376, 463, 559, 637
EaeI	YGGCCR	1 cut(s)	133
EagI	CGGCCG	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
EclXI	CGGCCG	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	68
Eco52I	CGGCCG	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	291
EcoRII	CCWGG	2 cut(s)	207, 459
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	3 cut(s)	13, 129, 544
FaiI	YATR	5 cut(s)	11, 127, 242, 255, 542
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FatI	CATG	3 cut(s)	9, 125, 540
Fnu4HI	GCNGC	4 cut(s)	73, 76, 123, 306
Fsp4HI	GCNGC	4 cut(s)	73, 76, 123, 306
FspBI	CTAG	1 cut(s)	438
GluI	GCNGC	4 cut(s)	73, 76, 123, 306
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	2 cut(s)	135, 293
Hin1II	CATG	3 cut(s)	13, 129, 544
HindIII	AAGCTT	1 cut(s)	282
HinfI	GANTC	2 cut(s)	228, 626
HphI	GGTGA	1 cut(s)	497
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	7 cut(s)	65, 232, 269, 278, 314, 563, 604
Hpy8I	GTNNAC	1 cut(s)	158
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	3 cut(s)	42, 195, 476
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4V	TGCA	3 cut(s)	158, 617, 650
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 119, 290
HpyF3I	CTNAG	2 cut(s)	270, 342
Hsp92II	CATG	3 cut(s)	13, 129, 544
KspI	CCGCGG	1 cut(s)	73
Kzo9I	GATC	6 cut(s)	116, 175, 376, 463, 559, 637
LmnI	GCTCC	1 cut(s)	593
Lsp1109I	GCAGC	2 cut(s)	134, 292
LweI	GCATC	2 cut(s)	283, 659
MaeI	CTAG	1 cut(s)	438
MalI	GATC	6 cut(s)	118, 177, 378, 465, 561, 639
MboI	GATC	6 cut(s)	116, 175, 376, 463, 559, 637
MboII	GAAGA	5 cut(s)	177, 329, 332, 458, 461
MflI	RGATCY	2 cut(s)	376, 463
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	1 cut(s)	421
MlyI	GAGTC	1 cut(s)	222
MnlI	CCTC	7 cut(s)	14, 17, 20, 131, 189, 205, 282
MroXI	GAANNNNTTC	1 cut(s)	52
MseI	TTAA	2 cut(s)	197, 335
MslI	CAYNNNNRTG	2 cut(s)	539, 551
MspA1I	CMGCKG	1 cut(s)	72
MspR9I	CCNGG	2 cut(s)	209, 461
Mva1269I	GAATGC	1 cut(s)	221
MvaI	CCWGG	2 cut(s)	209, 461
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	3 cut(s)	84, 119, 290
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	6 cut(s)	116, 175, 376, 463, 559, 637
NlaIII	CATG	3 cut(s)	13, 129, 544
NmeAIII	GCCGAG	2 cut(s)	111, 161
NspV	TTCGAA	2 cut(s)	46, 472
PaqCI	CACCTGC	1 cut(s)	92
PctI	GAATGC	1 cut(s)	221
PdmI	GAANNNNTTC	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	626
PfoI	TCCNGGA	2 cut(s)	207, 459
PkrI	GCNGC	4 cut(s)	74, 77, 124, 307
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	207, 459
PspGI	CCWGG	2 cut(s)	207, 459
PspPI	GGNCC	1 cut(s)	291
PstNI	CAGNNNCTG	1 cut(s)	269
PsuI	RGATCY	2 cut(s)	376, 463
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	2 cut(s)	539, 551
SacII	CCGCGG	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	197, 335
SatI	GCNGC	4 cut(s)	73, 76, 123, 306
Sau3AI	GATC	6 cut(s)	116, 175, 376, 463, 559, 637
Sau96I	GGNCC	1 cut(s)	291
SchI	GAGTC	1 cut(s)	222
ScrFI	CCNGG	2 cut(s)	209, 461
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	9 cut(s)	64, 86, 142, 286, 487, 494, 571, 598, 665
SfaNI	GCATC	2 cut(s)	283, 659
Sfr303I	CCGCGG	1 cut(s)	73
SfuI	TTCGAA	2 cut(s)	46, 472
SgrBI	CCGCGG	1 cut(s)	73
SmiMI	CAYNNNNRTG	2 cut(s)	539, 551
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
Sse9I	AATT	1 cut(s)	421
SsiI	CCGC	5 cut(s)	70, 72, 75, 101, 515
SspMI	CTAG	1 cut(s)	438
StyD4I	CCNGG	2 cut(s)	207, 459
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	260
TaqI	TCGA	5 cut(s)	46, 66, 472, 558, 636
TasI	AATT	1 cut(s)	421
TauI	GCSGC	2 cut(s)	75, 78
TfiI	GAWTC	1 cut(s)	626
Tru1I	TTAA	2 cut(s)	197, 335
Tru9I	TTAA	2 cut(s)	197, 335
TscAI	CASTG	2 cut(s)	501, 591
TseI	GCWGC	2 cut(s)	122, 305
TspDTI	ATGAA	3 cut(s)	402, 529, 639
TspRI	CASTG	2 cut(s)	501, 591
VneI	GTGCAC	1 cut(s)	156
XapI	RAATTY	1 cut(s)	421
XmnI	GAANNNNTTC	1 cut(s)	52
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.