Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0015964

Physical Location & Seq

Genomic Coordinates Forward (+)

9083512 .. 9084343

Gene Structure 832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGAAGACTTCTTCCCCGTCGACGACCTTCTGGATTTGTCAAACGACGCCCTTTTCTCACCCTCCACTGCTTCCTCCACCAACTCCATGGACCTCCACCACCATCCGCCGCCACTTGACCACCTGCACGGCACCACCACCACCTCCCTTTTCGCCCCCGCCACCACCTACACCGACTTCACCAACAACCTCTGTGTCCCCAGTGATGACGTGGCGGAACTGGAGTGGCTATCGCGCTTCATCGACGACTCCTTGACCGACGTCCCCGCCACCGACCTAGCCGGTTCCGCATCCTTCCAAAACGAAGCGTCGTTCATGTTTCCCAGTCGGGTCCGCACCAAACTCTCCAAATGGGCCGGCCCGCCTGACCCCCAAAACTCCCCCGCGAGGCCCAACAGGCCTAGGAGAGAGCCGTCGGAAGCGTCCCCTTCACCGCTCAGGTGCACGCACTGCGCCTCGGAGAAGACGCCGCAGTGGCGGGCAGGACCGATGGGCCCCAAGACGCTCTGCAACGCGTGCGGGGTCCGGTACAAGTCGGGTCGGCTCGTGCCCGAGTACCGGCCGGCGGCGAGTCCGACATTCGTGCTGACTCAGCACTCGAACTCGCACCGGAAGGTTCTGGAGCTTCGTCGCCAGAAGGAGGCTTCCCAGCAGCAGGCACCGCAAGAGCAACCACAGCAACACCGTCCGCATCAGCAGCAGTTCTATCTTCACCGCGACGAGTTTCGAGTTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

246

Amino Acids

27.55

Weight (kDa)

6.4

Isoelectric Point (pI)

59.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	148 - 182	3.2e-15	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45050 AT3G60530
fragaria_vesca	FvH4_7g10740
malus_domestica	MD07G1112200.v1.1
prunus_persica	Prupe.2G135400_v2.0.a1
pyrus_communis	pycom07g09710
rosa_chinensis	RchiOBHm_Chr1g0348681
rosa_laevigata	RLG00000028630
rosa_roxburghii	Rroxscaffold_4G00306760
rosa_rugosa	Rorug01G0196700
rosa_samantha	Rh1AG214100 Rh1BG180600 Rh1CG198700 Rh1DG210600
rosa_wichuraiana	Rw1G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	132
AatII	GACGTC	1 cut(s)	264
Acc36I	ACCTGC	1 cut(s)	132
AccB1I	GGYRCC	2 cut(s)	131, 658
AccBSI	CCGCTC	1 cut(s)	436
AccI	GTMKAC	1 cut(s)	21
AccII	CGCG	4 cut(s)	235, 386, 515, 717
AcoI	YGGCCR	1 cut(s)	560
AcyI	GRCGYC	3 cut(s)	48, 261, 467
AfaI	GTAC	2 cut(s)	530, 557
AfiI	CCNNNNNNNGG	5 cut(s)	387, 558, 565, 640, 655
AflIII	ACRYGT	1 cut(s)	513
AjiI	CACGTC	1 cut(s)	211
AluBI	AGCT	1 cut(s)	625
AluI	AGCT	1 cut(s)	625
Alw21I	GWGCWC	1 cut(s)	446
Alw44I	GTGCAC	1 cut(s)	442
Ama87I	CYCGRG	1 cut(s)	551
AoxI	GGCC	6 cut(s)	354, 358, 389, 398, 493, 560
ApaI	GGGCCC	1 cut(s)	497
ApaLI	GTGCAC	1 cut(s)	442
ApeKI	GCWGC	2 cut(s)	652, 697
AspA2I	CCTAGG	1 cut(s)	401
AspLEI	GCGC	2 cut(s)	237, 455
AspS9I	GGNCC	9 cut(s)	91, 331, 354, 359, 390, 485, 493, 494, 523
AsuHPI	GGTGA	4 cut(s)	51, 172, 423, 704
AvaI	CYCGRG	1 cut(s)	551
AvaII	GGWCC	4 cut(s)	91, 331, 485, 523
AvrII	CCTAGG	1 cut(s)	401
BaeGI	GKGCMC	3 cut(s)	446, 497, 552
BanI	GGYRCC	2 cut(s)	131, 658
BanII	GRGCYC	1 cut(s)	497
BauI	CACGAG	1 cut(s)	545
BbsI	GAAGAC	2 cut(s)	12, 470
Bbv12I	GWGCWC	1 cut(s)	446
BbvI	GCAGC	2 cut(s)	664, 709
BccI	CCATC	2 cut(s)	111, 484
BceAI	ACGGC	2 cut(s)	145, 397
BcgI	CGANNNNNNTGC	2 cut(s)	565, 599
BfaI	CTAG	2 cut(s)	278, 402
BfuAI	ACCTGC	1 cut(s)	132
BglI	GCCNNNNNGGC	2 cut(s)	397, 475
BisI	GCNGC	5 cut(s)	110, 470, 567, 653, 698
BlnI	CCTAGG	1 cut(s)	401
BlsI	GCNGC	5 cut(s)	111, 471, 568, 654, 699
Bme18I	GGWCC	4 cut(s)	91, 331, 485, 523
BmeT110I	CYCGRG	1 cut(s)	551
BmgBI	CACGTC	1 cut(s)	211
BmgT120I	GGNCC	9 cut(s)	91, 331, 354, 359, 390, 485, 493, 494, 523
BmiI	GGNNCC	7 cut(s)	133, 286, 332, 495, 496, 524, 660
BmrI	ACTGGG	2 cut(s)	195, 318
BmsI	GCATC	2 cut(s)	299, 700
BmuI	ACTGGG	2 cut(s)	195, 318
BoxI	GACNNNNGTC	1 cut(s)	260
BpiI	GAAGAC	2 cut(s)	12, 470
BpmI	CTGGAG	2 cut(s)	242, 641
Bpu10I	CCTNAGC	1 cut(s)	437
BsaHI	GRCGYC	3 cut(s)	48, 261, 467
BsaJI	CCNNGG	3 cut(s)	87, 401, 456
BsaWI	WCCGGW	2 cut(s)	525, 609
Bsc4I	CCNNNNNNNGG	5 cut(s)	387, 558, 565, 640, 655
Bse118I	RCCGGY	4 cut(s)	281, 356, 558, 562
Bse1I	ACTGG	3 cut(s)	201, 225, 324
BseDI	CCNNGG	3 cut(s)	87, 401, 456
BseGI	GGATG	2 cut(s)	103, 290
BseLI	CCNNNNNNNGG	5 cut(s)	387, 558, 565, 640, 655
BseMII	CTCAG	2 cut(s)	451, 605
BseNI	ACTGG	3 cut(s)	201, 225, 324
BseSI	GKGCMC	3 cut(s)	446, 497, 552
BseX3I	CGGCCG	1 cut(s)	560
BseXI	GCAGC	2 cut(s)	664, 709
BseYI	CCCAGC	1 cut(s)	648
BsgI	GTGCAG	1 cut(s)	110
Bsh1236I	CGCG	4 cut(s)	235, 386, 515, 717
Bsh1285I	CGRYCG	1 cut(s)	563
BshFI	GGCC	6 cut(s)	356, 360, 391, 400, 495, 562
BshNI	GGYRCC	2 cut(s)	131, 658
BsiEI	CGRYCG	1 cut(s)	563
BsiHKAI	GWGCWC	1 cut(s)	446
BsiHKCI	CYCGRG	1 cut(s)	551
BsiSI	CCGG	6 cut(s)	282, 357, 526, 559, 563, 610
BslFI	GGGAC	3 cut(s)	182, 248, 409
BslI	CCNNNNNNNGG	5 cut(s)	387, 558, 565, 640, 655
BsmFI	GGGAC	3 cut(s)	182, 248, 409
BsnI	GGCC	6 cut(s)	356, 360, 391, 400, 495, 562
BsoBI	CYCGRG	1 cut(s)	551
Bsp120I	GGGCCC	1 cut(s)	493
Bsp1286I	GDGCHC	3 cut(s)	446, 497, 552
Bsp19I	CCATGG	1 cut(s)	87
BspANI	GGCC	6 cut(s)	356, 360, 391, 400, 495, 562
BspCNI	CTCAG	2 cut(s)	450, 604
BspFNI	CGCG	4 cut(s)	235, 386, 515, 717
BspLI	GGNNCC	7 cut(s)	133, 286, 332, 495, 496, 524, 660
BspMI	ACCTGC	1 cut(s)	132
BspT107I	GGYRCC	2 cut(s)	131, 658
BsrBI	CCGCTC	1 cut(s)	436
BsrFI	RCCGGY	4 cut(s)	281, 356, 558, 562
BsrI	ACTGG	3 cut(s)	201, 225, 324
BssAI	RCCGGY	4 cut(s)	281, 356, 558, 562
BssECI	CCNNGG	3 cut(s)	87, 401, 456
BssNI	GRCGYC	3 cut(s)	48, 261, 467
BssSI	CACGAG	1 cut(s)	545
BssT1I	CCWWGG	2 cut(s)	87, 401
Bst2BI	CACGAG	1 cut(s)	545
Bst4CI	ACNGT	1 cut(s)	686
BstACI	GRCGYC	3 cut(s)	48, 261, 467
BstAPI	GCANNNNNTGC	2 cut(s)	450, 516
BstC8I	GCNNGC	7 cut(s)	358, 362, 446, 480, 517, 564, 657
BstDEI	CTNAG	2 cut(s)	437, 591
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	2 cut(s)	103, 290
BstFNI	CGCG	4 cut(s)	235, 386, 515, 717
BstHHI	GCGC	2 cut(s)	237, 455
BstMCI	CGRYCG	1 cut(s)	563
BstMWI	GCNNNNNNNGC	9 cut(s)	287, 397, 450, 475, 516, 592, 661, 676, 697
BstPAI	GACNNNNGTC	1 cut(s)	260
BstSLI	GKGCMC	3 cut(s)	446, 497, 552
BstUI	CGCG	4 cut(s)	235, 386, 515, 717
BstV1I	GCAGC	2 cut(s)	664, 709
BstV2I	GAAGAC	2 cut(s)	12, 470
BstXI	CCANNNNNNTGG	1 cut(s)	88
BstZI	CGGCCG	1 cut(s)	560
BsuRI	GGCC	6 cut(s)	356, 360, 391, 400, 495, 562
BtgI	CCRYGG	1 cut(s)	87
BtrI	CACGTC	1 cut(s)	211
BtsCI	GGATG	2 cut(s)	103, 290
BtsI	GCAGTG	3 cut(s)	66, 448, 479
BtsIMutI	CAGTG	4 cut(s)	66, 208, 448, 479
BveI	ACCTGC	1 cut(s)	132
Cac8I	GCNNGC	7 cut(s)	358, 362, 446, 480, 517, 564, 657
CfoI	GCGC	2 cut(s)	237, 455
Cfr10I	RCCGGY	4 cut(s)	281, 356, 558, 562
Cfr13I	GGNCC	9 cut(s)	91, 331, 354, 359, 390, 485, 493, 494, 523
CseI	GACGC	5 cut(s)	56, 297, 411, 475, 511
Csp6I	GTAC	2 cut(s)	529, 556
CviAII	CATG	2 cut(s)	88, 316
CviQI	GTAC	2 cut(s)	529, 556
DdeI	CTNAG	2 cut(s)	437, 591
EaeI	YGGCCR	1 cut(s)	560
EagI	CGGCCG	1 cut(s)	560
EciI	GGCGGA	2 cut(s)	96, 230
EclXI	CGGCCG	1 cut(s)	560
Eco130I	CCWWGG	2 cut(s)	87, 401
Eco147I	AGGCCT	1 cut(s)	400
Eco24I	GRGCYC	1 cut(s)	497
Eco47I	GGWCC	4 cut(s)	91, 331, 485, 523
Eco52I	CGGCCG	1 cut(s)	560
Eco88I	CYCGRG	1 cut(s)	551
EcoO109I	RGGNCCY	1 cut(s)	494
EcoT14I	CCWWGG	2 cut(s)	87, 401
EcoT38I	GRGCYC	1 cut(s)	497
ErhI	CCWWGG	2 cut(s)	87, 401
FaeI	CATG	2 cut(s)	91, 319
FaiI	YATR	2 cut(s)	89, 317
FaqI	GGGAC	3 cut(s)	182, 248, 409
FatI	CATG	2 cut(s)	87, 315
FauI	CCCGC	6 cut(s)	166, 274, 369, 391, 471, 512
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	5 cut(s)	110, 470, 567, 653, 698
FokI	GGATG	2 cut(s)	90, 277
FriOI	GRGCYC	1 cut(s)	497
FseI	GGCCGGCC	1 cut(s)	360
Fsp4HI	GCNGC	5 cut(s)	110, 470, 567, 653, 698
FspBI	CTAG	2 cut(s)	278, 402
GlaI	GCGC	2 cut(s)	236, 454
GluI	GCNGC	5 cut(s)	110, 470, 567, 653, 698
GsaI	CCCAGC	1 cut(s)	652
GsuI	CTGGAG	2 cut(s)	242, 641
HaeIII	GGCC	6 cut(s)	356, 360, 391, 400, 495, 562
HapII	CCGG	6 cut(s)	282, 357, 526, 559, 563, 610
HgaI	GACGC	5 cut(s)	56, 297, 411, 475, 511
HhaI	GCGC	2 cut(s)	237, 455
Hin1I	GRCGYC	3 cut(s)	48, 261, 467
Hin1II	CATG	2 cut(s)	91, 319
Hin6I	GCGC	2 cut(s)	235, 453
HinP1I	GCGC	2 cut(s)	235, 453
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	3 cut(s)	248, 571, 589
HpaII	CCGG	6 cut(s)	282, 357, 526, 559, 563, 610
HphI	GGTGA	4 cut(s)	51, 172, 423, 704
Hpy166II	GTNNAC	2 cut(s)	22, 444
Hpy188I	TCNGA	3 cut(s)	418, 460, 576
Hpy188III	TCNNGA	2 cut(s)	32, 620
Hpy8I	GTNNAC	2 cut(s)	22, 444
Hpy99I	CGWCG	9 cut(s)	23, 26, 50, 248, 263, 313, 418, 633, 722
HpyAV	CCTTC	5 cut(s)	38, 304, 438, 607, 631
HpyCH4III	ACNGT	1 cut(s)	686
HpyCH4IV	ACGT	2 cut(s)	210, 261
HpyCH4V	TGCA	3 cut(s)	127, 444, 510
HpyF10VI	GCNNNNNNNGC	9 cut(s)	287, 397, 450, 475, 516, 592, 661, 676, 697
HpyF3I	CTNAG	2 cut(s)	437, 591
HpySE526I	ACGT	2 cut(s)	210, 261
Hsp92I	GRCGYC	3 cut(s)	48, 261, 467
Hsp92II	CATG	2 cut(s)	91, 319
HspAI	GCGC	2 cut(s)	235, 453
KroI	GCCGGC	2 cut(s)	356, 562
KroNI	GCCGGC	2 cut(s)	358, 564
LmnI	GCTCC	1 cut(s)	622
Lsp1109I	GCAGC	2 cut(s)	664, 709
LweI	GCATC	2 cut(s)	299, 700
MaeI	CTAG	2 cut(s)	278, 402
MaeII	ACGT	2 cut(s)	210, 261
MbiI	CCGCTC	1 cut(s)	436
MboII	GAAGA	4 cut(s)	4, 17, 475, 701
MhlI	GDGCHC	3 cut(s)	446, 497, 552
MluI	ACGCGT	1 cut(s)	513
MlyI	GAGTC	3 cut(s)	242, 580, 583
MmeI	TCCRAC	2 cut(s)	396, 599
MnlI	CCTC	8 cut(s)	73, 85, 104, 154, 200, 381, 466, 634
MroNI	GCCGGC	2 cut(s)	356, 562
MspI	CCGG	6 cut(s)	282, 357, 526, 559, 563, 610
MvnI	CGCG	4 cut(s)	235, 386, 515, 717
MwoI	GCNNNNNNNGC	9 cut(s)	287, 397, 450, 475, 516, 592, 661, 676, 697
NaeI	GCCGGC	2 cut(s)	358, 564
NcoI	CCATGG	1 cut(s)	87
NgoMIV	GCCGGC	2 cut(s)	356, 562
NlaIII	CATG	2 cut(s)	91, 319
NlaIV	GGNNCC	7 cut(s)	133, 286, 332, 495, 496, 524, 660
PaqCI	CACCTGC	1 cut(s)	132
PceI	AGGCCT	1 cut(s)	400
PdiI	GCCGGC	2 cut(s)	358, 564
PkrI	GCNGC	5 cut(s)	111, 471, 568, 654, 699
PleI	GAGTC	3 cut(s)	242, 579, 583
PpsI	GAGTC	3 cut(s)	242, 579, 583
PshAI	GACNNNNGTC	1 cut(s)	260
PspFI	CCCAGC	1 cut(s)	648
PspN4I	GGNNCC	7 cut(s)	133, 286, 332, 495, 496, 524, 660
PspOMI	GGGCCC	1 cut(s)	493
PspPI	GGNCC	9 cut(s)	91, 331, 354, 359, 390, 485, 493, 494, 523
RigI	GGCCGGCC	1 cut(s)	360
RsaI	GTAC	2 cut(s)	530, 557
RsaNI	GTAC	2 cut(s)	529, 556
SalI	GTCGAC	1 cut(s)	20
SatI	GCNGC	5 cut(s)	110, 470, 567, 653, 698
Sau96I	GGNCC	9 cut(s)	91, 331, 354, 359, 390, 485, 493, 494, 523
SchI	GAGTC	3 cut(s)	242, 580, 583
SduI	GDGCHC	3 cut(s)	446, 497, 552
SfaNI	GCATC	2 cut(s)	299, 700
SfiI	GGCCNNNNNGGCC	1 cut(s)	397
SgrDI	CGTCGACG	1 cut(s)	20
SinI	GGWCC	4 cut(s)	91, 331, 485, 523
SseBI	AGGCCT	1 cut(s)	400
SspMI	CTAG	2 cut(s)	278, 402
StuI	AGGCCT	1 cut(s)	400
StyI	CCWWGG	2 cut(s)	87, 401
TaaI	ACNGT	1 cut(s)	686
TaiI	ACGT	2 cut(s)	213, 264
TaqI	TCGA	4 cut(s)	21, 243, 599, 727
TaqII	GACCGA	2 cut(s)	272, 502
TauI	GCSGC	3 cut(s)	112, 472, 569
TscAI	CASTG	4 cut(s)	73, 208, 455, 479
TseI	GCWGC	2 cut(s)	652, 697
TspDTI	ATGAA	2 cut(s)	229, 304
TspRI	CASTG	4 cut(s)	73, 208, 455, 479
VneI	GTGCAC	1 cut(s)	442
VpaK11BI	GGWCC	4 cut(s)	91, 331, 485, 523
XcmI	CCANNNNNNNNNTGG	2 cut(s)	85, 208
XmaJI	CCTAGG	1 cut(s)	401
XmiI	GTMKAC	1 cut(s)	21
XspI	CTAG	2 cut(s)	278, 402
ZraI	GACGTC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.