pycom07g10810

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0014547
Physical Location & Seq
Forward (+)
11013784 .. 11017062
3279 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 810 bp
ATGCAGAGCAATGGGATTATTCCTAATGCTTTTCCGTCTTCGGTACTGCTTTTAGTTCTAGACATGGTTTTGGGGTTTGGTCCTGCAAATCTTCTTCCCCACTGGCTGGAGGTCCTGCTGACTGAGAAATTCTTCAACGCTTGCATAATTCACGAGGAGGCAAAGAAGAACGAGAAGAACGTCTACTGTCTGGACTGTTGCTTCAGCCTCTGCCCTCACTGCCTCAACCCCCATACCTCTCACCGACTTTTGCAGATAAGGAGGTATGTGTACAACGATGTCATAAGGTTGGATGATGCTGCCAAGTTATTCGACTGTTCTTCTATTCAATCATACATAACCAACAGTGCAAAAGTGGTATTTTTAAACCAGAGGCCAACAAAGAATTGCAGAGGCTCCGGCAACGTCTGCAGCACCTGCGACAGAAACCTGCAAGACCCATATCTCTTCTGCTCCCTCCACTGCAAGATTGATCACGTTATAAGAACAGAAGGTGGCCTTTCCAAGTATCTCCGCGAGTGCAAGTTCATGGCTTTACCTGAATCCGGTTTAGACGACGGTCTGATGACACCTGACTCGGTTCTCAAACCGGCCGGTTCAACCCGAACCTCGTCTGGGTCTTACGGGTGTGGCGAGGTGAGTTGTTTGGCCTTGGCCTGCACTGCCACGACCGAAATTGTGAGGAAAAAGAGAAGTAACATGTCCGCATATCCGGCTGCTTGTCGACCGGTTTTTTTACCCGTGTCGGAAATCTCAGCCCGGTTGATGAACCGGAGGAAGGGGACTCCACACCGGGCGCCACTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
PLATZ

Protein Analysis

270

Amino Acids

29.92

Weight (kDa)

8.72

Isoelectric Point (pI)

52.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 87 - 157 1.9e-26 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60670
fragaria_vesca FvH4_7g11220
malus_domestica MD02G1208800.v1.1 MD07G1117000.v1.1
prunus_persica Prupe.2G140000_v2.0.a1
pyrus_communis pycom07g10810
rosa_chinensis RchiOBHm_Chr1g0349351
rosa_laevigata RLG00000028556
rosa_multiflora Rmu_co8365383.1_g000001 Rmu_sc0031211.1_g000001
rosa_roxburghii Rroxscaffold_4G00305630
rosa_rugosa Rorug01G0202900
rosa_samantha Rh1AG220300 Rh1BG186300 Rh1CG205400 Rh1DG215800
rosa_wichuraiana Rw1G018720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 482
AarI CACCTGC 1 cut(s) 425
Acc36I ACCTGC 2 cut(s) 425, 438
AccB1I GGYRCC 1 cut(s) 796
AccB7I CCANNNNNTGG 1 cut(s) 106
AccI GTMKAC 2 cut(s) 183, 724
AccII CGCG 1 cut(s) 516
AciI CCGC 2 cut(s) 514, 705
AcoI YGGCCR 1 cut(s) 591
AcsI RAATTY 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 187
AcyI GRCGYC 1 cut(s) 797
AfaI GTAC 2 cut(s) 45, 272
AfiI CCNNNNNNNGG 4 cut(s) 106, 545, 615, 778
AflIII ACRYGT 1 cut(s) 699
AgeI ACCGGT 1 cut(s) 727
AgsI TTSAA 3 cut(s) 136, 329, 600
AlwNI CAGNNNCTG 2 cut(s) 210, 417
AoxI GGCC 5 cut(s) 374, 496, 591, 648, 654
ApeKI GCWGC 3 cut(s) 299, 411, 716
ApoI RAATTY 1 cut(s) 128
AsiGI ACCGGT 1 cut(s) 727
Asp700I GAANNNNTTC 1 cut(s) 131
AspLEI GCGC 1 cut(s) 799
AspS9I GGNCC 2 cut(s) 80, 112
AsuC2I CCSGG 2 cut(s) 760, 794
AsuHPI GGTGA 2 cut(s) 233, 649
AvaII GGWCC 2 cut(s) 80, 112
BanI GGYRCC 1 cut(s) 796
BarI GAAGNNNNNNTAC 2 cut(s) 167, 199
BauI CACGAG 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 30
BbvI GCAGC 3 cut(s) 286, 423, 703
BclI TGATCA 1 cut(s) 472
BcnI CCSGG 2 cut(s) 760, 794
BfaI CTAG 1 cut(s) 59
BfmI CTRYAG 1 cut(s) 409
BfoI RGCGCY 1 cut(s) 800
BfuAI ACCTGC 2 cut(s) 425, 438
BisI GCNGC 3 cut(s) 300, 412, 717
BlsI GCNGC 3 cut(s) 301, 413, 718
Bme1390I CCNGG 2 cut(s) 760, 794
Bme18I GGWCC 2 cut(s) 80, 112
BmgT120I GGNCC 2 cut(s) 80, 112
BmiI GGNNCC 2 cut(s) 397, 798
BmrFI CCNGG 2 cut(s) 760, 794
BmsI GCATC 1 cut(s) 286
BoxI GACNNNNGTC 1 cut(s) 558
BpiI GAAGAC 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 128
BpuMI CCSGG 2 cut(s) 760, 794
BsaHI GRCGYC 1 cut(s) 797
BsaJI CCNNGG 1 cut(s) 651
BsaWI WCCGGW 3 cut(s) 545, 727, 771
Bsc4I CCNNNNNNNGG 4 cut(s) 106, 545, 615, 778
Bse118I RCCGGY 3 cut(s) 589, 593, 727
Bse1I ACTGG 1 cut(s) 107
Bse3DI GCAATG 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 651
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 4 cut(s) 106, 545, 615, 778
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 2 cut(s) 114, 768
BseNI ACTGG 1 cut(s) 107
BseRI GAGGAG 1 cut(s) 170
BseX3I CGGCCG 1 cut(s) 591
BseXI GCAGC 3 cut(s) 286, 423, 703
BsgI GTGCAG 1 cut(s) 643
Bsh1236I CGCG 1 cut(s) 516
Bsh1285I CGRYCG 3 cut(s) 594, 672, 728
BshFI GGCC 5 cut(s) 376, 498, 593, 650, 656
BshNI GGYRCC 1 cut(s) 796
BshTI ACCGGT 1 cut(s) 727
BsiEI CGRYCG 3 cut(s) 594, 672, 728
BsiSI CCGG 9 cut(s) 399, 546, 590, 594, 713, 728, 760, 772, 793
BslFI GGGAC 1 cut(s) 796
BslI CCNNNNNNNGG 4 cut(s) 106, 545, 615, 778
BsmFI GGGAC 1 cut(s) 796
BsnI GGCC 5 cut(s) 376, 498, 593, 650, 656
Bsp1407I TGTACA 1 cut(s) 270
Bsp143I GATC 1 cut(s) 472
BspACI CCGC 2 cut(s) 514, 705
BspANI GGCC 5 cut(s) 376, 498, 593, 650, 656
BspCNI CTCAG 2 cut(s) 115, 767
BspFNI CGCG 1 cut(s) 516
BspLI GGNNCC 2 cut(s) 397, 798
BspMAI CTGCAG 1 cut(s) 413
BspMI ACCTGC 2 cut(s) 425, 438
BspT107I GGYRCC 1 cut(s) 796
BsrDI GCAATG 1 cut(s) 16
BsrFI RCCGGY 3 cut(s) 589, 593, 727
BsrGI TGTACA 1 cut(s) 270
BsrI ACTGG 1 cut(s) 107
BssAI RCCGGY 3 cut(s) 589, 593, 727
BssECI CCNNGG 1 cut(s) 651
BssMI GATC 1 cut(s) 472
BssNI GRCGYC 1 cut(s) 797
BssSI CACGAG 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 651
Bst2BI CACGAG 1 cut(s) 152
Bst4CI ACNGT 6 cut(s) 188, 197, 317, 347, 560, 804
Bst6I CTCTTC 1 cut(s) 452
BstACI GRCGYC 1 cut(s) 797
BstAPI GCANNNNNTGC 2 cut(s) 408, 417
BstAUI TGTACA 1 cut(s) 270
BstC8I GCNNGC 2 cut(s) 142, 658
BstDEI CTNAG 2 cut(s) 123, 754
BstF5I GGATG 1 cut(s) 298
BstFNI CGCG 1 cut(s) 516
BstH2I RGCGCY 1 cut(s) 800
BstHHI GCGC 1 cut(s) 799
BstKTI GATC 1 cut(s) 475
BstMBI GATC 1 cut(s) 472
BstMCI CGRYCG 3 cut(s) 594, 672, 728
BstMWI GCNNNNNNNGC 5 cut(s) 219, 408, 417, 662, 713
BstNSI RCATGY 1 cut(s) 703
BstPAI GACNNNNGTC 1 cut(s) 558
BstSCI CCNGG 2 cut(s) 758, 792
BstSFI CTRYAG 1 cut(s) 409
BstUI CGCG 1 cut(s) 516
BstV1I GCAGC 3 cut(s) 286, 423, 703
BstV2I GAAGAC 1 cut(s) 30
BstZI CGGCCG 1 cut(s) 591
BsuRI GGCC 5 cut(s) 376, 498, 593, 650, 656
BtsCI GGATG 1 cut(s) 298
BtsI GCAGTG 3 cut(s) 217, 460, 660
BtsIMutI CAGTG 6 cut(s) 100, 217, 352, 460, 660, 800
BveI ACCTGC 2 cut(s) 425, 438
Cac8I GCNNGC 2 cut(s) 142, 658
CaiI CAGNNNCTG 2 cut(s) 210, 417
CfoI GCGC 1 cut(s) 799
Cfr10I RCCGGY 3 cut(s) 589, 593, 727
Cfr13I GGNCC 2 cut(s) 80, 112
Csp6I GTAC 2 cut(s) 44, 271
CspAI ACCGGT 1 cut(s) 727
CviAII CATG 3 cut(s) 64, 529, 700
CviQI GTAC 2 cut(s) 44, 271
DdeI CTNAG 2 cut(s) 123, 754
DinI GGCGCC 1 cut(s) 798
DpnI GATC 1 cut(s) 474
DpnII GATC 1 cut(s) 472
DraI TTTAAA 1 cut(s) 366
EaeI YGGCCR 1 cut(s) 591
EagI CGGCCG 1 cut(s) 591
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
EclXI CGGCCG 1 cut(s) 591
Eco130I CCWWGG 1 cut(s) 651
Eco47I GGWCC 2 cut(s) 80, 112
Eco52I CGGCCG 1 cut(s) 591
Eco57I CTGAAG 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 651
EgeI GGCGCC 1 cut(s) 798
EheI GGCGCC 1 cut(s) 798
ErhI CCWWGG 1 cut(s) 651
FaeI CATG 3 cut(s) 67, 532, 703
FalI AAGNNNNNCTT 2 cut(s) 483, 515
FaqI GGGAC 1 cut(s) 796
FatI CATG 3 cut(s) 63, 528, 699
FbaI TGATCA 1 cut(s) 472
FblI GTMKAC 2 cut(s) 183, 724
Fnu4HI GCNGC 3 cut(s) 300, 412, 717
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 3 cut(s) 300, 412, 717
FspBI CTAG 1 cut(s) 59
GlaI GCGC 1 cut(s) 798
GluI GCNGC 3 cut(s) 300, 412, 717
GsuI CTGGAG 1 cut(s) 128
HaeII RGCGCY 1 cut(s) 800
HaeIII GGCC 5 cut(s) 376, 498, 593, 650, 656
HapII CCGG 9 cut(s) 399, 546, 590, 594, 713, 728, 760, 772, 793
HhaI GCGC 1 cut(s) 799
Hin1I GRCGYC 1 cut(s) 797
Hin1II CATG 3 cut(s) 67, 532, 703
Hin6I GCGC 1 cut(s) 797
HinP1I GCGC 1 cut(s) 797
HincII GTYRAC 1 cut(s) 725
HindII GTYRAC 1 cut(s) 725
HinfI GANTC 3 cut(s) 542, 575, 784
HpaII CCGG 9 cut(s) 399, 546, 590, 594, 713, 728, 760, 772, 793
HphI GGTGA 2 cut(s) 233, 649
Hpy166II GTNNAC 3 cut(s) 184, 271, 725
Hpy188I TCNGA 2 cut(s) 564, 748
Hpy188III TCNNGA 3 cut(s) 59, 152, 191
Hpy8I GTNNAC 3 cut(s) 184, 271, 725
Hpy99I CGWCG 1 cut(s) 560
HpyAV CCTTC 2 cut(s) 485, 772
HpyCH4III ACNGT 6 cut(s) 188, 197, 317, 347, 560, 804
HpyCH4IV ACGT 3 cut(s) 180, 405, 477
HpyF10VI GCNNNNNNNGC 5 cut(s) 219, 408, 417, 662, 713
HpyF3I CTNAG 2 cut(s) 123, 754
HpySE526I ACGT 3 cut(s) 180, 405, 477
Hsp92I GRCGYC 1 cut(s) 797
Hsp92II CATG 3 cut(s) 67, 532, 703
HspAI GCGC 1 cut(s) 797
KasI GGCGCC 1 cut(s) 796
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 1 cut(s) 472
LmnI GCTCC 2 cut(s) 401, 458
Lsp1109I GCAGC 3 cut(s) 286, 423, 703
LweI GCATC 1 cut(s) 286
MaeI CTAG 1 cut(s) 59
MaeII ACGT 3 cut(s) 180, 405, 477
MaeIII GTNAC 1 cut(s) 695
MalI GATC 1 cut(s) 474
MboI GATC 1 cut(s) 472
MboII GAAGA 8 cut(s) 30, 83, 86, 124, 178, 187, 312, 439
MluCI AATT 4 cut(s) 128, 147, 385, 675
Mly113I GGCGCC 1 cut(s) 797
MlyI GAGTC 2 cut(s) 569, 778
MmeI TCCRAC 2 cut(s) 270, 726
MroXI GAANNNNTTC 1 cut(s) 131
MseI TTAA 1 cut(s) 365
MspI CCGG 9 cut(s) 399, 546, 590, 594, 713, 728, 760, 772, 793
MspR9I CCNGG 2 cut(s) 760, 794
MvnI CGCG 1 cut(s) 516
MwoI GCNNNNNNNGC 5 cut(s) 219, 408, 417, 662, 713
NarI GGCGCC 1 cut(s) 797
NciI CCSGG 2 cut(s) 760, 794
NdeII GATC 1 cut(s) 472
NlaIII CATG 3 cut(s) 67, 532, 703
NlaIV GGNNCC 2 cut(s) 397, 798
NspI RCATGY 1 cut(s) 703
PaqCI CACCTGC 1 cut(s) 425
PciI ACATGT 1 cut(s) 699
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 630
PdmI GAANNNNTTC 1 cut(s) 131
PfeI GAWTC 1 cut(s) 542
PflMI CCANNNNNTGG 1 cut(s) 106
PinAI ACCGGT 1 cut(s) 727
PkrI GCNGC 3 cut(s) 301, 413, 718
PleI GAGTC 2 cut(s) 569, 778
PluTI GGCGCC 1 cut(s) 800
PpsI GAGTC 2 cut(s) 569, 778
PpuMI RGGWCCY 1 cut(s) 112
PscI ACATGT 1 cut(s) 699
PshAI GACNNNNGTC 1 cut(s) 558
PsiI TTATAA 1 cut(s) 482
Psp5II RGGWCCY 1 cut(s) 112
PspN4I GGNNCC 2 cut(s) 397, 798
PspPI GGNCC 2 cut(s) 80, 112
PspPPI RGGWCCY 1 cut(s) 112
PstI CTGCAG 1 cut(s) 413
PstNI CAGNNNCTG 2 cut(s) 210, 417
RsaI GTAC 2 cut(s) 45, 272
RsaNI GTAC 2 cut(s) 44, 271
SalI GTCGAC 1 cut(s) 723
SaqAI TTAA 1 cut(s) 365
SatI GCNGC 3 cut(s) 300, 412, 717
Sau3AI GATC 1 cut(s) 472
Sau96I GGNCC 2 cut(s) 80, 112
SchI GAGTC 2 cut(s) 569, 778
ScrFI CCNGG 2 cut(s) 760, 794
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 409
SfoI GGCGCC 1 cut(s) 798
SinI GGWCC 2 cut(s) 80, 112
Sse9I AATT 4 cut(s) 128, 147, 385, 675
SsiI CCGC 2 cut(s) 514, 705
SspDI GGCGCC 1 cut(s) 796
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 2 cut(s) 758, 792
StyI CCWWGG 1 cut(s) 651
TaaI ACNGT 6 cut(s) 188, 197, 317, 347, 560, 804
TaiI ACGT 3 cut(s) 183, 408, 480
TaqI TCGA 2 cut(s) 312, 724
TaqII GACCGA 1 cut(s) 686
TasI AATT 4 cut(s) 128, 147, 385, 675
TatI WGTACW 1 cut(s) 270
TfiI GAWTC 1 cut(s) 542
Tru1I TTAA 1 cut(s) 365
Tru9I TTAA 1 cut(s) 365
TscAI CASTG 6 cut(s) 107, 224, 352, 467, 667, 807
TseI GCWGC 3 cut(s) 299, 411, 716
TspDTI ATGAA 2 cut(s) 517, 782
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 6 cut(s) 107, 224, 352, 467, 667, 807
Van91I CCANNNNNTGG 1 cut(s) 106
VpaK11BI GGWCC 2 cut(s) 80, 112
XapI RAATTY 1 cut(s) 128
XbaI TCTAGA 1 cut(s) 58
XceI RCATGY 1 cut(s) 703
XmiI GTMKAC 2 cut(s) 183, 724
XmnI GAANNNNTTC 1 cut(s) 131
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.