pycom07g14900

UV-stimulated scaffold protein A homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0014390
Physical Location & Seq
Reverse (-)
16924442 .. 16925689
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 873 bp
ATGGAAGAAGAGGAAGGAGGGAAGGTTAGGGTTTTGATAGAGACGGCGACGATCTCGACCGAACCGGATGTCGACCCACGCCTCCTCAAGGCCATCAAGTCGGTTGTCCGATACTCCGATTCGGAGCTCCGACTCGCCGCTCGTATTCTCATGGATCTTATGAAGCGCGAACACTCTCAGGTGCGCTACCTCACACTTCTTATCATTGATGAGCTTTTTATGAGATCAAAGCTATTTCGAACCCTTGTTGTGGAAAATTTGGATCAGTTATTGACTTTAAGTGTCGGATTTAGAATACATTCGTCACTCCCACCTCCGGCAAATGTTGCGACTGCTCTGCGTAAGAAGGCGATAGAGTTTTTGGAGAAGTGGAATTCTTCGTTTGGGGTTCACTATAAGCAGATTAGGTTAGGGTTTGATTACCTTAAGAACACCCTTAAGTATCAGTTCCCAAATCTACAGGAAACGGCGACTCGGCTTCAACAGGAGAGAAGGGAAAGGGAGAGGAAGACGAAAAAGATCTTGTTGAAAAAATTTGAGATTTTGGAAAAGAATTTTGCGTCAATTAAGGAAGAAATTCAATCTACTGTTGATGAGATTGGGGAGTGTTTAGAAATTGTACGCCCTAAAGAGGAAGGTGTTCCGTTTTGTCCATTAGATGAGGAAGATATGGAAGAGTTTCATTCTTATGAGTTCCGGCAGTTGCGCTTACAAGCATTGGAAGAAGGAGAAAAGCTTCATGAGAATAGTGAAAACAAAGTGGTTTTTGATGCCCGGCGGGAGCTTTACAAGATATTGGTAAAGCATTTGACTGCAGTGCAAGAATGGATCCTTGTTCTTGTAAAAGTTGAACTGACTGATAACAAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2043

Protein Analysis

291

Amino Acids

34.1

Weight (kDa)

6.17

Isoelectric Point (pI)

54.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVSSA_N PF20867 9 - 145 7.9e-38 UVSSA N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014390)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61800 AT3G61800
fragaria_vesca FvH4_7g16650
malus_domestica MD01G1082100.v1.1 MD07G1150500.v1.1
prunus_persica Prupe.2G189300_v2.0.a1
pyrus_communis pycom07g14900
rosa_chinensis RchiOBHm_Chr1g0359811
rosa_laevigata RLG00000027852
rosa_multiflora Rmu_ssc0000371.1_g000006
rosa_roxburghii Rroxscaffold_4G00296810
rosa_rugosa Rorug01G0272800
rosa_samantha Rh1AG286700 Rh1BG252600 Rh1CG269800 Rh1DG281600
rosa_wichuraiana Rw1G025460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 140
AccI GTMKAC 1 cut(s) 72
AccII CGCG 1 cut(s) 168
AciI CCGC 2 cut(s) 138, 778
AclWI GGATC 4 cut(s) 162, 270, 823, 836
AcsI RAATTY 5 cut(s) 256, 373, 533, 553, 576
AfaI GTAC 1 cut(s) 621
AfiI CCNNNNNNNGG 4 cut(s) 88, 250, 316, 631
AflII CTTAAG 2 cut(s) 425, 437
AgsI TTSAA 4 cut(s) 482, 529, 581, 851
AluBI AGCT 5 cut(s) 127, 214, 232, 736, 784
AluI AGCT 5 cut(s) 127, 214, 232, 736, 784
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 4 cut(s) 162, 270, 823, 836
AoxI GGCC 1 cut(s) 90
ApoI RAATTY 5 cut(s) 256, 373, 533, 553, 576
ArsI GACNNNNNNTTYG 2 cut(s) 54, 86
Asp700I GAANNNNTTC 5 cut(s) 298, 576, 639, 678, 735
AspLEI GCGC 3 cut(s) 168, 186, 708
AsuC2I CCSGG 1 cut(s) 775
AsuII TTCGAA 1 cut(s) 238
BamHI GGATCC 1 cut(s) 828
BanII GRGCYC 1 cut(s) 129
BbsI GAAGAC 1 cut(s) 515
Bbv12I GWGCWC 1 cut(s) 129
BccI CCATC 1 cut(s) 101
BceAI ACGGC 2 cut(s) 60, 483
BcgI CGANNNNNNTGC 2 cut(s) 319, 353
BcnI CCSGG 1 cut(s) 775
BcoDI GTCTC 1 cut(s) 35
BfmI CTRYAG 2 cut(s) 458, 813
BfrI CTTAAG 2 cut(s) 425, 437
BglII AGATCT 1 cut(s) 519
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 775
BmiI GGNNCC 1 cut(s) 830
BmrFI CCNGG 1 cut(s) 775
BmsI GCATC 1 cut(s) 760
BpiI GAAGAC 1 cut(s) 515
Bpu14I TTCGAA 1 cut(s) 238
BpuEI CTTGAG 1 cut(s) 71
BpuMI CCSGG 1 cut(s) 775
BsaWI WCCGGW 1 cut(s) 64
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 250, 316, 631
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 4 cut(s) 88, 250, 316, 631
BseMII CTCAG 1 cut(s) 191
BseRI GAGGAG 1 cut(s) 74
Bsh1236I CGCG 1 cut(s) 168
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 92
BsiEI CGRYCG 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 129
BsiSI CCGG 4 cut(s) 65, 317, 697, 775
BslI CCNNNNNNNGG 4 cut(s) 88, 250, 316, 631
BsmAI GTCTC 1 cut(s) 35
BsmBI CGTCTC 1 cut(s) 35
BsnI GGCC 1 cut(s) 92
Bsp119I TTCGAA 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 6 cut(s) 51, 154, 224, 262, 519, 828
BspACI CCGC 2 cut(s) 138, 778
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 1 cut(s) 190
BspFNI CGCG 1 cut(s) 168
BspHI TCATGA 1 cut(s) 739
BspLI GGNNCC 1 cut(s) 830
BspMAI CTGCAG 1 cut(s) 817
BspPI GGATC 4 cut(s) 162, 270, 823, 836
BspT104I TTCGAA 1 cut(s) 238
BspTI CTTAAG 2 cut(s) 425, 437
BsrBI CCGCTC 1 cut(s) 140
BssMI GATC 6 cut(s) 51, 154, 224, 262, 519, 828
Bst4CI ACNGT 1 cut(s) 589
Bst6I CTCTTC 2 cut(s) 3, 669
BstAFI CTTAAG 2 cut(s) 425, 437
BstAPI GCANNNNNTGC 1 cut(s) 326
BstBI TTCGAA 1 cut(s) 238
BstDEI CTNAG 1 cut(s) 177
BstENI CCTNNNNNAGG 1 cut(s) 86
BstF5I GGATG 1 cut(s) 73
BstFNI CGCG 1 cut(s) 168
BstHHI GCGC 3 cut(s) 168, 186, 708
BstKTI GATC 6 cut(s) 54, 157, 227, 265, 522, 831
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 6 cut(s) 51, 154, 224, 262, 519, 828
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstSCI CCNGG 1 cut(s) 773
BstSFI CTRYAG 2 cut(s) 458, 813
BstUI CGCG 1 cut(s) 168
BstV2I GAAGAC 1 cut(s) 515
BstX2I RGATCY 3 cut(s) 154, 519, 828
BstYI RGATCY 3 cut(s) 154, 519, 828
BsuRI GGCC 1 cut(s) 92
BtsCI GGATG 1 cut(s) 73
BtsI GCAGTG 1 cut(s) 822
BtsIMutI CAGTG 1 cut(s) 822
CciI TCATGA 1 cut(s) 739
CfoI GCGC 3 cut(s) 168, 186, 708
CseI GACGC 1 cut(s) 549
Csp6I GTAC 1 cut(s) 620
CviAII CATG 2 cut(s) 151, 740
CviJI RGCY 7 cut(s) 92, 127, 214, 232, 478, 736, 784
CviKI_1 RGCY 7 cut(s) 92, 127, 214, 232, 478, 736, 784
CviQI GTAC 1 cut(s) 620
DdeI CTNAG 1 cut(s) 177
DpnI GATC 6 cut(s) 53, 156, 226, 264, 521, 830
DpnII GATC 6 cut(s) 51, 154, 224, 262, 519, 828
Eam1104I CTCTTC 2 cut(s) 3, 669
EarI CTCTTC 2 cut(s) 3, 669
Ecl136II GAGCTC 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 129
Eco53kI GAGCTC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 127
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoRI GAATTC 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 129
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 2 cut(s) 154, 743
FaiI YATR 7 cut(s) 152, 161, 221, 396, 671, 690, 741
FatI CATG 2 cut(s) 150, 739
FauI CCCGC 1 cut(s) 771
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 138
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 138
GlaI GCGC 3 cut(s) 167, 185, 707
GluI GCNGC 1 cut(s) 138
HaeIII GGCC 1 cut(s) 92
HapII CCGG 4 cut(s) 65, 317, 697, 775
HgaI GACGC 1 cut(s) 549
HhaI GCGC 3 cut(s) 168, 186, 708
Hin1II CATG 2 cut(s) 154, 743
Hin6I GCGC 3 cut(s) 166, 184, 706
HinP1I GCGC 3 cut(s) 166, 184, 706
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 734
HinfI GANTC 3 cut(s) 119, 132, 472
HpaII CCGG 4 cut(s) 65, 317, 697, 775
Hpy166II GTNNAC 2 cut(s) 73, 391
Hpy188I TCNGA 5 cut(s) 110, 118, 124, 131, 287
Hpy188III TCNNGA 2 cut(s) 55, 740
Hpy8I GTNNAC 2 cut(s) 73, 391
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 6 cut(s) 8, 16, 340, 486, 629, 719
HpyCH4III ACNGT 1 cut(s) 589
HpyCH4V TGCA 2 cut(s) 815, 820
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 2 cut(s) 154, 743
HspAI GCGC 3 cut(s) 166, 184, 706
Kzo9I GATC 6 cut(s) 51, 154, 224, 262, 519, 828
LmnI GCTCC 3 cut(s) 124, 132, 781
LpnPI CCDG 7 cut(s) 78, 164, 330, 446, 470, 710, 788
LweI GCATC 1 cut(s) 760
MaeIII GTNAC 1 cut(s) 303
MalI GATC 6 cut(s) 53, 156, 226, 264, 521, 830
MbiI CCGCTC 1 cut(s) 140
MboI GATC 6 cut(s) 51, 154, 224, 262, 519, 828
MboII GAAGA 8 cut(s) 17, 20, 369, 520, 584, 677, 686, 734
MflI RGATCY 3 cut(s) 154, 519, 828
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 7 cut(s) 256, 373, 533, 553, 564, 576, 615
MlyI GAGTC 2 cut(s) 126, 466
MmeI TCCRAC 2 cut(s) 154, 265
MnlI CCTC 9 cut(s) 4, 11, 92, 95, 200, 324, 498, 625, 655
MroXI GAANNNNTTC 5 cut(s) 298, 576, 639, 678, 735
MseI TTAA 4 cut(s) 278, 426, 438, 567
MslI CAYNNNNRTG 1 cut(s) 687
MspCI CTTAAG 2 cut(s) 425, 437
MspI CCGG 4 cut(s) 65, 317, 697, 775
MspR9I CCNGG 1 cut(s) 775
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 326
NciI CCSGG 1 cut(s) 775
NdeII GATC 6 cut(s) 51, 154, 224, 262, 519, 828
NlaIII CATG 2 cut(s) 154, 743
NlaIV GGNNCC 1 cut(s) 830
NmeAIII GCCGAG 1 cut(s) 454
NmuCI GTSAC 1 cut(s) 303
NspV TTCGAA 1 cut(s) 238
PagI TCATGA 1 cut(s) 739
PdmI GAANNNNTTC 5 cut(s) 298, 576, 639, 678, 735
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 139
PleI GAGTC 2 cut(s) 126, 466
PpsI GAGTC 2 cut(s) 126, 466
Psp124BI GAGCTC 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 830
PstI CTGCAG 1 cut(s) 817
PsuI RGATCY 3 cut(s) 154, 519, 828
RsaI GTAC 1 cut(s) 621
RsaNI GTAC 1 cut(s) 620
RseI CAYNNNNRTG 1 cut(s) 687
SacI GAGCTC 1 cut(s) 129
SalI GTCGAC 1 cut(s) 71
SaqAI TTAA 4 cut(s) 278, 426, 438, 567
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 6 cut(s) 51, 154, 224, 262, 519, 828
SchI GAGTC 2 cut(s) 126, 466
ScrFI CCNGG 1 cut(s) 775
SduI GDGCHC 1 cut(s) 129
SfaNI GCATC 1 cut(s) 760
SfcI CTRYAG 2 cut(s) 458, 813
SfuI TTCGAA 1 cut(s) 238
SmiMI CAYNNNNRTG 1 cut(s) 687
SmlI CTYRAG 3 cut(s) 86, 425, 437
SmoI CTYRAG 3 cut(s) 86, 425, 437
Sse9I AATT 7 cut(s) 256, 373, 533, 553, 564, 576, 615
SsiI CCGC 2 cut(s) 138, 778
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 773
TaaI ACNGT 1 cut(s) 589
TaqI TCGA 3 cut(s) 56, 72, 238
TaqII GACCGA 1 cut(s) 74
TasI AATT 7 cut(s) 256, 373, 533, 553, 564, 576, 615
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 4 cut(s) 278, 426, 438, 567
Tru9I TTAA 4 cut(s) 278, 426, 438, 567
TscAI CASTG 1 cut(s) 822
TseFI GTSAC 1 cut(s) 303
Tsp45I GTSAC 1 cut(s) 303
TspDTI ATGAA 3 cut(s) 176, 671, 728
TspGWI ACGGA 1 cut(s) 633
TspRI CASTG 1 cut(s) 822
Vha464I CTTAAG 2 cut(s) 425, 437
XagI CCTNNNNNAGG 1 cut(s) 86
XapI RAATTY 5 cut(s) 256, 373, 533, 553, 576
XmiI GTMKAC 1 cut(s) 72
XmnI GAANNNNTTC 5 cut(s) 298, 576, 639, 678, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.