Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007883

Physical Location & Seq

Genomic Coordinates Reverse (-)

18592167 .. 18595172

Gene Structure 3006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGATGAGTCTGCACGCGGGGACGAAGGCCGAGTCGACTCACCACCGACTCTACGAGTTCGCCAAAGCTGCACTCACCAGAATCTTCGTCCACCCTTACGCCACGGTGTGCGAATTGTACTGCGGCGGAGGAGTCGACGCCGAGAAGTGGGACGATGCTCAAATCGGCCATTACATCGGAATCGATATTTCGTCGTCGGGAATAAGCCAGAGAAGAGAAGCGTGGGAGAGCCAGAGGAAGGCTTACACTGCTGACTTCTTTGAGCTTGACCCTTGCATGGAAGATGTAGAGATGCATTTGAAAGATAAGTCAAACACGGCTGATTTAGTTTGCTGCTTGCAGAATTTGCAGATGTGTTTCCAAACTGAGGAGAGAGCAAGGAAACTATTGCTTAATGTGTCATCCTTATTGAAACCAGGGGGTTACTTTTTCGGTATTACTCCTGACTCATCTACAATATGGGCAAAGTACCAGAAGAATGTTGAAGCATACCACAATAGAAGTGGTGGCATGAAACCAAACATTGTCCCCAATTGCATTAGATCAGAGAACTACACGATTACCTTTGAAGTTGAGGAAGAGAAGTTTCCTATATTTGGAAAGAAATACCAACTGAAATTTGCTAATGATATCTCTTCTGAAAGTCATCACTTGGTTCATTTCCCAAGCTTTATCAGGTTAGCCAGAGAAGCTGGTCTTGAGTATGTGGAGATTCAAAACTTAACTGAATTTTACGATGACAACAGAGCACAATTTGCAGGCATGATAATGAATTCCTGTTCAAACCTTGTGGATCCTCGAGGAAGACTTCTTCCTCGATCATATGATGTATTAGGTTTATATACTACGTTTATATTCCAAAAGCCGGACCCTGATATTTCTCCCCCGCTCATGACACCAGTGCTGCACGATGTAACTTACATTCAAGACGAGAGAGAGTGGCAAGTGCCCGTGACGACTATCTGGAGAGACGATGAAAAGACCGTACCAGTAGAGCTGCCTCCTGGCTTGGGAAAGATTAGTGAACAAAAAGGGATTTTGGGTCCAGGCCCTGCTGAGTTGCGTTTTTCCGAGGCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

361

Amino Acids

41.0

Weight (kDa)

5.36

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	15 - 167	2.3e-07	Methyltransferase domain
Methyltransf_31	PF13847	34 - 168	2.2e-08	Methyltransferase domain
mRNA_G-N7_MeTrfase	PF03291	35 - 288	4.8e-37	mRNA (guanine-N(7))-methyltransferase domain
Methyltransf_25	PF13649	36 - 141	1.3e-07	Methyltransferase domain
Methyltransf_12	PF08242	41 - 143	1.5e-07	Methyltransferase domain
Methyltransf_11	PF08241	41 - 144	7.8e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52210 AT3G52210 AT3G52210
fragaria_vesca	FvH4_7g18320 FvH4_7g18320 FvH4_7g18320
malus_domestica	MD01G1099500.v1.1 MD07G1166400.v1.1 MD16G1171900.v1.1
prunus_persica	Prupe.2G205200_v2.0.a1 Prupe.2G205200_v2.0.a1
pyrus_communis	pycom01g12660 pycom07g16170
rosa_chinensis	RchiOBHm_Chr1g0362021
rosa_laevigata	RLG00000027679
rosa_multiflora	Rmu_sc0010614.1_g000007
rosa_roxburghii	Rroxscaffold_4G00294580
rosa_rugosa	Rorug01G0292700 Rorug01G0292800
rosa_samantha	Rh1AG303100 Rh1BG266300 Rh1CG284500 Rh1DG296300
rosa_wichuraiana	Rw1G026990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	798
AccBSI	CCGCTC	1 cut(s)	889
AccI	GTMKAC	2 cut(s)	35, 135
AccII	CGCG	1 cut(s)	17
AciI	CCGC	4 cut(s)	17, 123, 126, 887
AclWI	GGATC	2 cut(s)	788, 801
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	4 cut(s)	343, 617, 728, 772
AcyI	GRCGYC	1 cut(s)	138
AdeI	CACNNNGTG	1 cut(s)	108
AfaI	GTAC	3 cut(s)	119, 470, 987
AfiI	CCNNNNNNNGG	7 cut(s)	147, 238, 277, 367, 596, 865, 1010
AgsI	TTSAA	7 cut(s)	301, 412, 485, 569, 716, 783, 926
AjnI	CCWGG	3 cut(s)	415, 1003, 1045
AluBI	AGCT	5 cut(s)	68, 265, 669, 692, 997
AluI	AGCT	5 cut(s)	68, 265, 669, 692, 997
Alw21I	GWGCWC	1 cut(s)	751
Alw26I	GTCTC	1 cut(s)	963
AlwI	GGATC	2 cut(s)	788, 801
AlwNI	CAGNNNCTG	1 cut(s)	1052
Ama87I	CYCGRG	1 cut(s)	798
AoxI	GGCC	3 cut(s)	27, 166, 1048
ApeKI	GCWGC	4 cut(s)	68, 333, 904, 997
ApoI	RAATTY	4 cut(s)	343, 617, 728, 772
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
AspS9I	GGNCC	3 cut(s)	868, 1043, 1049
AsuHPI	GGTGA	2 cut(s)	32, 67
AvaI	CYCGRG	1 cut(s)	798
AvaII	GGWCC	2 cut(s)	868, 1043
BaeGI	GKGCMC	1 cut(s)	951
BamHI	GGATCC	1 cut(s)	793
BbsI	GAAGAC	1 cut(s)	811
Bbv12I	GWGCWC	1 cut(s)	751
BbvI	GCAGC	4 cut(s)	55, 320, 891, 984
BceAI	ACGGC	1 cut(s)	333
BciT130I	CCWGG	3 cut(s)	417, 1005, 1047
BcoDI	GTCTC	1 cut(s)	963
BisI	GCNGC	5 cut(s)	69, 124, 334, 905, 998
BlsI	GCNGC	5 cut(s)	70, 125, 335, 906, 999
Bme1390I	CCNGG	3 cut(s)	417, 1005, 1047
Bme18I	GGWCC	2 cut(s)	868, 1043
BmeT110I	CYCGRG	1 cut(s)	798
BmgT120I	GGNCC	3 cut(s)	868, 1043, 1049
BmiI	GGNNCC	3 cut(s)	795, 870, 1044
BmrFI	CCNGG	3 cut(s)	417, 1005, 1047
BmsI	GCATC	2 cut(s)	145, 282
BpiI	GAAGAC	1 cut(s)	811
BpmI	CTGGAG	1 cut(s)	985
BpuEI	CTTGAG	1 cut(s)	719
Bsa29I	ATCGAT	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	3 cut(s)	102, 416, 1071
Bsc4I	CCNNNNNNNGG	7 cut(s)	147, 238, 277, 367, 596, 865, 1010
Bse1I	ACTGG	2 cut(s)	899, 989
BseBI	CCWGG	3 cut(s)	417, 1005, 1047
BseCI	ATCGAT	1 cut(s)	183
BseDI	CCNNGG	3 cut(s)	102, 416, 1071
BseGI	GGATG	1 cut(s)	401
BseLI	CCNNNNNNNGG	7 cut(s)	147, 238, 277, 367, 596, 865, 1010
BseMII	CTCAG	2 cut(s)	357, 1047
BseNI	ACTGG	2 cut(s)	899, 989
BseRI	GAGGAG	2 cut(s)	144, 383
BseSI	GKGCMC	1 cut(s)	951
BseXI	GCAGC	4 cut(s)	55, 320, 891, 984
BsgI	GTGCAG	2 cut(s)	54, 890
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	3 cut(s)	29, 168, 1050
BshVI	ATCGAT	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	751
BsiHKCI	CYCGRG	1 cut(s)	798
BsiSI	CCGG	1 cut(s)	866
BslFI	GGGAC	3 cut(s)	34, 164, 512
BslI	CCNNNNNNNGG	7 cut(s)	147, 238, 277, 367, 596, 865, 1010
BsmAI	GTCTC	1 cut(s)	963
BsmBI	CGTCTC	1 cut(s)	963
BsmFI	GGGAC	3 cut(s)	34, 164, 512
BsnI	GGCC	3 cut(s)	29, 168, 1050
BsoBI	CYCGRG	1 cut(s)	798
Bsp1286I	GDGCHC	2 cut(s)	751, 951
Bsp143I	GATC	3 cut(s)	542, 793, 818
BspACI	CCGC	4 cut(s)	17, 123, 126, 887
BspANI	GGCC	3 cut(s)	29, 168, 1050
BspCNI	CTCAG	2 cut(s)	358, 1048
BspDI	ATCGAT	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	17
BspHI	TCATGA	1 cut(s)	891
BspLI	GGNNCC	3 cut(s)	795, 870, 1044
BspPI	GGATC	2 cut(s)	788, 801
BsrBI	CCGCTC	1 cut(s)	889
BsrI	ACTGG	2 cut(s)	899, 989
BssECI	CCNNGG	3 cut(s)	102, 416, 1071
BssMI	GATC	3 cut(s)	542, 793, 818
BssNI	GRCGYC	1 cut(s)	138
Bst2UI	CCWGG	3 cut(s)	417, 1005, 1047
Bst4CI	ACNGT	2 cut(s)	106, 985
Bst6I	CTCTTC	3 cut(s)	208, 573, 640
BstACI	GRCGYC	1 cut(s)	138
BstAPI	GCANNNNNTGC	2 cut(s)	346, 755
BstC8I	GCNNGC	3 cut(s)	15, 338, 760
BstDEI	CTNAG	2 cut(s)	366, 1056
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	401
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	3 cut(s)	545, 796, 821
BstMAI	GTCTC	1 cut(s)	963
BstMBI	GATC	3 cut(s)	542, 793, 818
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 248, 346, 689, 755
BstNI	CCWGG	3 cut(s)	417, 1005, 1047
BstSCI	CCNGG	3 cut(s)	415, 1003, 1045
BstSLI	GKGCMC	1 cut(s)	951
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	4 cut(s)	55, 320, 891, 984
BstV2I	GAAGAC	1 cut(s)	811
BstX2I	RGATCY	1 cut(s)	793
BstYI	RGATCY	1 cut(s)	793
Bsu15I	ATCGAT	1 cut(s)	183
BsuRI	GGCC	3 cut(s)	29, 168, 1050
BsuTUI	ATCGAT	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	401
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	246, 906
Cac8I	GCNNGC	3 cut(s)	15, 338, 760
CaiI	CAGNNNCTG	1 cut(s)	1052
CciI	TCATGA	1 cut(s)	891
Cfr13I	GGNCC	3 cut(s)	868, 1043, 1049
ClaI	ATCGAT	1 cut(s)	183
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	3 cut(s)	118, 469, 986
CspCI	CAANNNNNGTGG	4 cut(s)	484, 519, 771, 806
CviAII	CATG	4 cut(s)	277, 511, 763, 892
CviQI	GTAC	3 cut(s)	118, 469, 986
DdeI	CTNAG	2 cut(s)	366, 1056
DpnI	GATC	3 cut(s)	544, 795, 820
DpnII	GATC	3 cut(s)	542, 793, 818
DraIII	CACNNNGTG	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	3 cut(s)	208, 573, 640
EarI	CTCTTC	3 cut(s)	208, 573, 640
EciI	GGCGGA	1 cut(s)	141
Eco32I	GATATC	1 cut(s)	631
Eco47I	GGWCC	2 cut(s)	868, 1043
Eco88I	CYCGRG	1 cut(s)	798
EcoO109I	RGGNCCY	1 cut(s)	1049
EcoRI	GAATTC	1 cut(s)	772
EcoRII	CCWGG	3 cut(s)	415, 1003, 1045
EcoRV	GATATC	1 cut(s)	631
EcoT22I	ATGCAT	1 cut(s)	297
Esp3I	CGTCTC	1 cut(s)	963
FaeI	CATG	4 cut(s)	280, 514, 766, 895
FalI	AAGNNNNNCTT	2 cut(s)	681, 713
FaqI	GGGAC	3 cut(s)	34, 164, 512
FatI	CATG	4 cut(s)	276, 510, 762, 891
FauI	CCCGC	2 cut(s)	10, 894
FauNDI	CATATG	1 cut(s)	823
FblI	GTMKAC	2 cut(s)	35, 135
Fnu4HI	GCNGC	5 cut(s)	69, 124, 334, 905, 998
FokI	GGATG	1 cut(s)	388
Fsp4HI	GCNGC	5 cut(s)	69, 124, 334, 905, 998
GluI	GCNGC	5 cut(s)	69, 124, 334, 905, 998
GsuI	CTGGAG	1 cut(s)	985
HaeIII	GGCC	3 cut(s)	29, 168, 1050
HapII	CCGG	1 cut(s)	866
HgaI	GACGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	4 cut(s)	280, 514, 766, 895
HincII	GTYRAC	2 cut(s)	36, 136
HindII	GTYRAC	2 cut(s)	36, 136
HindIII	AAGCTT	1 cut(s)	667
HinfI	GANTC	9 cut(s)	7, 32, 37, 48, 81, 132, 180, 446, 712
HpaII	CCGG	1 cut(s)	866
HphI	GGTGA	2 cut(s)	32, 67
Hpy166II	GTNNAC	4 cut(s)	36, 91, 136, 1025
Hpy188I	TCNGA	4 cut(s)	179, 547, 640, 1072
Hpy188III	TCNNGA	6 cut(s)	198, 443, 698, 892, 926, 964
Hpy8I	GTNNAC	4 cut(s)	36, 91, 136, 1025
Hpy99I	CGWCG	3 cut(s)	140, 196, 199
HpyAV	CCTTC	2 cut(s)	19, 232
HpyCH4III	ACNGT	2 cut(s)	106, 985
HpyCH4IV	ACGT	1 cut(s)	848
HpyCH4V	TGCA	9 cut(s)	13, 71, 276, 295, 340, 349, 537, 758, 907
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 248, 346, 689, 755
HpyF3I	CTNAG	2 cut(s)	366, 1056
HpySE526I	ACGT	1 cut(s)	848
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	4 cut(s)	280, 514, 766, 895
Kzo9I	GATC	3 cut(s)	542, 793, 818
Lsp1109I	GCAGC	4 cut(s)	55, 320, 891, 984
LweI	GCATC	2 cut(s)	145, 282
MaeII	ACGT	1 cut(s)	848
MaeIII	GTNAC	3 cut(s)	422, 913, 952
MalI	GATC	3 cut(s)	544, 795, 820
MbiI	CCGCTC	1 cut(s)	889
MboI	GATC	3 cut(s)	542, 793, 818
MboII	GAAGA	8 cut(s)	76, 225, 293, 487, 590, 627, 803, 816
MfeI	CAATTG	1 cut(s)	532
MflI	RGATCY	1 cut(s)	793
MhlI	GDGCHC	2 cut(s)	751, 951
MluCI	AATT	7 cut(s)	113, 343, 532, 617, 728, 752, 772
MlyI	GAGTC	6 cut(s)	16, 31, 41, 42, 141, 440
MnlI	CCTC	9 cut(s)	122, 228, 361, 568, 794, 807, 825, 1011, 1066
Mph1103I	ATGCAT	1 cut(s)	297
MseI	TTAA	2 cut(s)	393, 722
MslI	CAYNNNNRTG	1 cut(s)	767
MspI	CCGG	1 cut(s)	866
MspR9I	CCNGG	3 cut(s)	417, 1005, 1047
MunI	CAATTG	1 cut(s)	532
MvaI	CCWGG	3 cut(s)	417, 1005, 1047
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	5 cut(s)	68, 248, 346, 689, 755
NdeI	CATATG	1 cut(s)	823
NdeII	GATC	3 cut(s)	542, 793, 818
NlaIII	CATG	4 cut(s)	280, 514, 766, 895
NlaIV	GGNNCC	3 cut(s)	795, 870, 1044
NmeAIII	GCCGAG	2 cut(s)	55, 166
NmuCI	GTSAC	1 cut(s)	952
NsiI	ATGCAT	1 cut(s)	297
PaeR7I	CTCGAG	1 cut(s)	798
PagI	TCATGA	1 cut(s)	891
PfeI	GAWTC	3 cut(s)	81, 180, 712
PkrI	GCNGC	5 cut(s)	70, 125, 335, 906, 999
PleI	GAGTC	6 cut(s)	15, 31, 40, 42, 140, 440
PpsI	GAGTC	6 cut(s)	15, 31, 40, 42, 140, 440
Psp6I	CCWGG	3 cut(s)	415, 1003, 1045
PspGI	CCWGG	3 cut(s)	415, 1003, 1045
PspN4I	GGNNCC	3 cut(s)	795, 870, 1044
PspPI	GGNCC	3 cut(s)	868, 1043, 1049
PspXI	VCTCGAGB	1 cut(s)	798
PstNI	CAGNNNCTG	1 cut(s)	1052
PsuI	RGATCY	1 cut(s)	793
RsaI	GTAC	3 cut(s)	119, 470, 987
RsaNI	GTAC	3 cut(s)	118, 469, 986
RseI	CAYNNNNRTG	1 cut(s)	767
SalI	GTCGAC	2 cut(s)	34, 134
SaqAI	TTAA	2 cut(s)	393, 722
SatI	GCNGC	5 cut(s)	69, 124, 334, 905, 998
Sau3AI	GATC	3 cut(s)	542, 793, 818
Sau96I	GGNCC	3 cut(s)	868, 1043, 1049
SchI	GAGTC	6 cut(s)	16, 31, 41, 42, 141, 440
ScrFI	CCNGG	3 cut(s)	417, 1005, 1047
SduI	GDGCHC	2 cut(s)	751, 951
SfaNI	GCATC	2 cut(s)	145, 282
Sfr274I	CTCGAG	1 cut(s)	798
SinI	GGWCC	2 cut(s)	868, 1043
SlaI	CTCGAG	1 cut(s)	798
SmiMI	CAYNNNNRTG	1 cut(s)	767
SmlI	CTYRAG	2 cut(s)	698, 798
SmoI	CTYRAG	2 cut(s)	698, 798
Sse9I	AATT	7 cut(s)	113, 343, 532, 617, 728, 752, 772
SsiI	CCGC	4 cut(s)	17, 123, 126, 887
StyD4I	CCNGG	3 cut(s)	415, 1003, 1045
TaaI	ACNGT	2 cut(s)	106, 985
TaiI	ACGT	1 cut(s)	851
TaqI	TCGA	5 cut(s)	35, 135, 183, 799, 817
TasI	AATT	7 cut(s)	113, 343, 532, 617, 728, 752, 772
TatI	WGTACW	1 cut(s)	117
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	3 cut(s)	81, 180, 712
Tru1I	TTAA	2 cut(s)	393, 722
Tru9I	TTAA	2 cut(s)	393, 722
TscAI	CASTG	2 cut(s)	253, 906
TseFI	GTSAC	1 cut(s)	952
TseI	GCWGC	4 cut(s)	68, 333, 904, 997
Tsp45I	GTSAC	1 cut(s)	952
TspDTI	ATGAA	4 cut(s)	527, 647, 785, 990
TspRI	CASTG	2 cut(s)	253, 906
VpaK11BI	GGWCC	2 cut(s)	868, 1043
XapI	RAATTY	4 cut(s)	343, 617, 728, 772
XcmI	CCANNNNNNNNNTGG	1 cut(s)	500
XhoI	CTCGAG	1 cut(s)	798
XmiI	GTMKAC	2 cut(s)	35, 135
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.