pycom07g18610

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0012503
Physical Location & Seq
Reverse (-)
21053915 .. 21055398
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 915 bp
ATGGACTGCCGGGTAGTGTGCATGGCAGGCGGCGACGTGTGGATGAGGGGTAATATCGGAGGGGGTTTCAGCCACGAGAGCGAGCACGACCTCGCTCTCATGGTCACTGATTTTTTGGAAAACGGTAGCGTTGGAGCTGAGTCGTGGTGTAGCAGCGACAGCGATTCTGCTCTCTCCGATCTCGGTCACCTTGCCGATAAAATTCCGTTTTTCAAGCGTTCAGTGGCTCGGTACGAAAGCGATTTGACTTCAGTGGTTCATTCTTCGATACTGTCCATCAGCGAAAACGATCTTAATTTTGATAAGTCAGGTCAATGCAGTTCCAGCTGCCTCAAGTTTGCTCTGGTTAAGCTTCTGAGGCTTTCAGGTTATGACGCTGCCATGTGCGCGGCTCGGTGGCAGGGCAGTGGCAAGGTCCCCGGAGGGGATCATGAATATATTGATGTGGTGAACTACAGCAATCTGGGGAGCTCTGAGCGTCTCATCATCGATCTTGATTTCCGGAGCCACTTTGAAATAGCTAGAGCTGTCCAATCGTATGATAGAATATTGAATTCACTACCAGTTGTTTATGTGGGATCCTTGACTAGGCTGAAACAGTACCTTAAAGTTATGGCTGAAGCTGCTAGATCTTCCCTAAAGCAGAACTCGATGCCTCTTCCTCCGTGGAGATCGCTTGCATATCTGCAAGCGAAATGGCAGTCACCATACCAGAGAAAGTTTAATCTAGAAGAACAGAATGTTAATGGTTCCTACAATTTTGACCACAAGAAATGCAGTGCACATTTGAAGGTGCTGCAGTCTCTGCTTCAGTCTGAAATTGAAGCAGAAATACTGTTGAGGCCCATAAATAACGATCATGTTAGGAGGCACAAGCCCGATAGGCGGAGGCACTCTTTGTTCAGGATTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

305

Amino Acids

34.26

Weight (kDa)

7.67

Isoelectric Point (pI)

60.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 34 - 239 3.5e-63 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39650 AT2G39650
fragaria_vesca FvH4_7g22510
malus_domestica MD01G1134400.v1.1 MD07G1198800.v1.1 MD07G1198900.v1.1
prunus_persica Prupe.2G235800_v2.0.a1
pyrus_communis pycom01g15510 pycom07g18610
rosa_chinensis RchiOBHm_Chr1g0367191
rosa_laevigata RLG00000027293
rosa_multiflora Rmu_sc0006367.1_g000003
rosa_roxburghii Rroxscaffold_4G00289560
rosa_rugosa Rorug01G0335100
rosa_samantha Rh1AG341900 Rh1BG302200 Rh1CG318600 Rh1DG334700
rosa_wichuraiana Rw1G030380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 389
AccIII TCCGGA 1 cut(s) 501
AciI CCGC 3 cut(s) 30, 389, 886
AclWI GGATC 3 cut(s) 435, 573, 586
AcsI RAATTY 2 cut(s) 201, 553
AcuI CTGAAG 3 cut(s) 234, 639, 794
AfaI GTAC 2 cut(s) 233, 602
AfiI CCNNNNNNNGG 3 cut(s) 424, 588, 885
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 5 cut(s) 214, 515, 553, 790, 824
AjiI CACGTC 1 cut(s) 37
AluBI AGCT 7 cut(s) 137, 327, 352, 471, 521, 527, 623
AluI AGCT 7 cut(s) 137, 327, 352, 471, 521, 527, 623
Alw21I GWGCWC 3 cut(s) 87, 473, 784
Alw26I GTCTC 2 cut(s) 485, 807
Alw44I GTGCAC 1 cut(s) 780
AlwI GGATC 3 cut(s) 435, 573, 586
AlwNI CAGNNNCTG 1 cut(s) 805
Aor13HI TCCGGA 1 cut(s) 501
AoxI GGCC 1 cut(s) 842
ApaLI GTGCAC 1 cut(s) 780
ApeKI GCWGC 5 cut(s) 153, 327, 377, 623, 796
ApoI RAATTY 2 cut(s) 201, 553
ArsI GACNNNNNNTTYG 2 cut(s) 686, 718
AspLEI GCGC 1 cut(s) 389
AspS9I GGNCC 2 cut(s) 415, 843
AsuC2I CCSGG 2 cut(s) 11, 420
AsuHPI GGTGA 3 cut(s) 179, 460, 696
AvaII GGWCC 1 cut(s) 415
BaeGI GKGCMC 1 cut(s) 784
BamHI GGATCC 1 cut(s) 578
BanII GRGCYC 1 cut(s) 473
BarI GAAGNNNNNNTAC 2 cut(s) 816, 848
BauI CACGAG 1 cut(s) 74
Bbv12I GWGCWC 3 cut(s) 87, 473, 784
BbvI GCAGC 5 cut(s) 165, 314, 364, 610, 783
BccI CCATC 1 cut(s) 284
BcnI CCSGG 2 cut(s) 11, 420
BcoDI GTCTC 2 cut(s) 485, 807
BfaI CTAG 4 cut(s) 522, 588, 627, 728
BfmI CTRYAG 2 cut(s) 454, 797
BglI GCCNNNNNGGC 1 cut(s) 883
BglII AGATCT 1 cut(s) 629
BisI GCNGC 7 cut(s) 31, 154, 328, 378, 390, 624, 797
BlsI GCNGC 7 cut(s) 32, 155, 329, 379, 391, 625, 798
Bme1390I CCNGG 2 cut(s) 11, 420
Bme18I GGWCC 1 cut(s) 415
BmgBI CACGTC 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 415, 843
BmiI GGNNCC 4 cut(s) 417, 506, 580, 751
BmrFI CCNGG 2 cut(s) 11, 420
BmsI GCATC 1 cut(s) 642
BpuEI CTTGAG 1 cut(s) 317
BpuMI CCSGG 2 cut(s) 11, 420
Bsa29I ATCGAT 1 cut(s) 489
BsaJI CCNNGG 2 cut(s) 418, 665
BsaWI WCCGGW 1 cut(s) 501
Bsc4I CCNNNNNNNGG 3 cut(s) 424, 588, 885
Bse1I ACTGG 1 cut(s) 563
BseAI TCCGGA 1 cut(s) 501
BseCI ATCGAT 1 cut(s) 489
BseDI CCNNGG 2 cut(s) 418, 665
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 3 cut(s) 424, 588, 885
BseMII CTCAG 3 cut(s) 129, 347, 465
BseNI ACTGG 1 cut(s) 563
BseSI GKGCMC 1 cut(s) 784
BseXI GCAGC 5 cut(s) 165, 314, 364, 610, 783
Bsh1236I CGCG 1 cut(s) 389
BshFI GGCC 1 cut(s) 844
BshVI ATCGAT 1 cut(s) 489
BsiHKAI GWGCWC 3 cut(s) 87, 473, 784
BsiSI CCGG 3 cut(s) 10, 420, 502
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 3 cut(s) 424, 588, 885
BsmAI GTCTC 2 cut(s) 485, 807
BsmBI CGTCTC 1 cut(s) 485
BsmFI GGGAC 1 cut(s) 401
BsnI GGCC 1 cut(s) 844
Bsp1286I GDGCHC 3 cut(s) 87, 473, 784
Bsp13I TCCGGA 1 cut(s) 501
Bsp143I GATC 8 cut(s) 178, 289, 427, 490, 578, 629, 671, 856
BspACI CCGC 3 cut(s) 30, 389, 886
BspANI GGCC 1 cut(s) 844
BspCNI CTCAG 3 cut(s) 130, 348, 466
BspDI ATCGAT 1 cut(s) 489
BspEI TCCGGA 1 cut(s) 501
BspFNI CGCG 1 cut(s) 389
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 4 cut(s) 417, 506, 580, 751
BspMAI CTGCAG 1 cut(s) 801
BspPI GGATC 3 cut(s) 435, 573, 586
BsrI ACTGG 1 cut(s) 563
BssECI CCNNGG 2 cut(s) 418, 665
BssMI GATC 8 cut(s) 178, 289, 427, 490, 578, 629, 671, 856
BssSI CACGAG 1 cut(s) 74
Bst2BI CACGAG 1 cut(s) 74
Bst4CI ACNGT 4 cut(s) 125, 273, 600, 837
Bst6I CTCTTC 1 cut(s) 663
BstAPI GCANNNNNTGC 1 cut(s) 805
BstC8I GCNNGC 4 cut(s) 28, 83, 678, 690
BstDEI CTNAG 3 cut(s) 138, 356, 474
BstDSI CCRYGG 1 cut(s) 665
BstEII GGTNACC 1 cut(s) 185
BstENI CCTNNNNNAGG 1 cut(s) 586
BstF5I GGATG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 389
BstHHI GCGC 1 cut(s) 389
BstKTI GATC 8 cut(s) 181, 292, 430, 493, 581, 632, 674, 859
BstMAI GTCTC 2 cut(s) 485, 807
BstMBI GATC 8 cut(s) 178, 289, 427, 490, 578, 629, 671, 856
BstMWI GCNNNNNNNGC 9 cut(s) 27, 78, 159, 324, 358, 386, 623, 805, 883
BstPI GGTNACC 1 cut(s) 185
BstSCI CCNGG 2 cut(s) 9, 418
BstSFI CTRYAG 2 cut(s) 454, 797
BstSLI GKGCMC 1 cut(s) 784
BstUI CGCG 1 cut(s) 389
BstV1I GCAGC 5 cut(s) 165, 314, 364, 610, 783
BstX2I RGATCY 2 cut(s) 578, 629
BstYI RGATCY 2 cut(s) 578, 629
Bsu15I ATCGAT 1 cut(s) 489
BsuRI GGCC 1 cut(s) 844
BsuTUI ATCGAT 1 cut(s) 489
BtgI CCRYGG 1 cut(s) 665
BtrI CACGTC 1 cut(s) 37
BtsCI GGATG 1 cut(s) 48
BtsI GCAGTG 2 cut(s) 412, 784
BtsIMutI CAGTG 5 cut(s) 105, 228, 258, 412, 784
Cac8I GCNNGC 4 cut(s) 28, 83, 678, 690
CaiI CAGNNNCTG 1 cut(s) 805
CciI TCATGA 1 cut(s) 430
CfoI GCGC 1 cut(s) 389
Cfr13I GGNCC 2 cut(s) 415, 843
ClaI ATCGAT 1 cut(s) 489
CseI GACGC 2 cut(s) 383, 467
Csp6I GTAC 2 cut(s) 232, 601
CviAII CATG 5 cut(s) 22, 100, 382, 431, 860
CviQI GTAC 2 cut(s) 232, 601
DdeI CTNAG 3 cut(s) 138, 356, 474
DpnI GATC 8 cut(s) 180, 291, 429, 492, 580, 631, 673, 858
DpnII GATC 8 cut(s) 178, 289, 427, 490, 578, 629, 671, 856
Eam1104I CTCTTC 1 cut(s) 663
EarI CTCTTC 1 cut(s) 663
EciI GGCGGA 1 cut(s) 901
Ecl136II GAGCTC 1 cut(s) 471
Eco24I GRGCYC 1 cut(s) 473
Eco47I GGWCC 1 cut(s) 415
Eco53kI GAGCTC 1 cut(s) 471
Eco57I CTGAAG 3 cut(s) 234, 639, 794
Eco91I GGTNACC 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 471
EcoNI CCTNNNNNAGG 1 cut(s) 586
EcoO109I RGGNCCY 1 cut(s) 415
EcoO65I GGTNACC 1 cut(s) 185
EcoRI GAATTC 1 cut(s) 553
EcoT38I GRGCYC 1 cut(s) 473
Esp3I CGTCTC 1 cut(s) 485
FaeI CATG 5 cut(s) 25, 103, 385, 434, 863
FaqI GGGAC 1 cut(s) 401
FatI CATG 5 cut(s) 21, 99, 381, 430, 859
Fnu4HI GCNGC 7 cut(s) 31, 154, 328, 378, 390, 624, 797
FokI GGATG 1 cut(s) 55
FriOI GRGCYC 1 cut(s) 473
Fsp4HI GCNGC 7 cut(s) 31, 154, 328, 378, 390, 624, 797
FspBI CTAG 4 cut(s) 522, 588, 627, 728
GlaI GCGC 1 cut(s) 388
GluI GCNGC 7 cut(s) 31, 154, 328, 378, 390, 624, 797
HaeIII GGCC 1 cut(s) 844
HapII CCGG 3 cut(s) 10, 420, 502
HgaI GACGC 2 cut(s) 383, 467
HhaI GCGC 1 cut(s) 389
Hin1II CATG 5 cut(s) 25, 103, 385, 434, 863
Hin6I GCGC 1 cut(s) 387
HinP1I GCGC 1 cut(s) 387
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 3 cut(s) 140, 164, 907
HpaII CCGG 3 cut(s) 10, 420, 502
HphI GGTGA 3 cut(s) 179, 460, 696
Hpy166II GTNNAC 2 cut(s) 451, 782
Hpy188I TCNGA 5 cut(s) 59, 178, 357, 475, 817
Hpy188III TCNNGA 5 cut(s) 431, 494, 502, 728, 904
Hpy8I GTNNAC 2 cut(s) 451, 782
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 1 cut(s) 784
HpyCH4III ACNGT 4 cut(s) 125, 273, 600, 837
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 7 cut(s) 21, 318, 680, 688, 777, 782, 799
HpyF10VI GCNNNNNNNGC 9 cut(s) 27, 78, 159, 324, 358, 386, 623, 805, 883
HpyF3I CTNAG 3 cut(s) 138, 356, 474
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 5 cut(s) 25, 103, 385, 434, 863
HspAI GCGC 1 cut(s) 387
Kpn2I TCCGGA 1 cut(s) 501
Kzo9I GATC 8 cut(s) 178, 289, 427, 490, 578, 629, 671, 856
LmnI GCTCC 3 cut(s) 134, 468, 504
Lsp1109I GCAGC 5 cut(s) 165, 314, 364, 610, 783
LweI GCATC 1 cut(s) 642
MaeI CTAG 4 cut(s) 522, 588, 627, 728
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 3 cut(s) 103, 185, 702
MalI GATC 8 cut(s) 180, 291, 429, 492, 580, 631, 673, 858
MboI GATC 8 cut(s) 178, 289, 427, 490, 578, 629, 671, 856
MboII GAAGA 4 cut(s) 255, 624, 650, 743
MflI RGATCY 2 cut(s) 578, 629
MhlI GDGCHC 3 cut(s) 87, 473, 784
MluCI AATT 5 cut(s) 201, 295, 553, 757, 819
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 112
MroI TCCGGA 1 cut(s) 501
MseI TTAA 5 cut(s) 294, 348, 606, 723, 744
MspA1I CMGCKG 1 cut(s) 327
MspI CCGG 3 cut(s) 10, 420, 502
MspR9I CCNGG 2 cut(s) 11, 420
MvnI CGCG 1 cut(s) 389
MwoI GCNNNNNNNGC 9 cut(s) 27, 78, 159, 324, 358, 386, 623, 805, 883
NciI CCSGG 2 cut(s) 11, 420
NdeII GATC 8 cut(s) 178, 289, 427, 490, 578, 629, 671, 856
NlaIII CATG 5 cut(s) 25, 103, 385, 434, 863
NlaIV GGNNCC 4 cut(s) 417, 506, 580, 751
NmuCI GTSAC 3 cut(s) 103, 185, 702
PagI TCATGA 1 cut(s) 430
PfeI GAWTC 2 cut(s) 164, 907
PkrI GCNGC 7 cut(s) 32, 155, 329, 379, 391, 625, 798
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PpuMI RGGWCCY 1 cut(s) 415
Psp124BI GAGCTC 1 cut(s) 473
Psp5II RGGWCCY 1 cut(s) 415
PspEI GGTNACC 1 cut(s) 185
PspN4I GGNNCC 4 cut(s) 417, 506, 580, 751
PspPI GGNCC 2 cut(s) 415, 843
PspPPI RGGWCCY 1 cut(s) 415
PstI CTGCAG 1 cut(s) 801
PstNI CAGNNNCTG 1 cut(s) 805
PsuI RGATCY 2 cut(s) 578, 629
PvuII CAGCTG 1 cut(s) 327
RsaI GTAC 2 cut(s) 233, 602
RsaNI GTAC 2 cut(s) 232, 601
SacI GAGCTC 1 cut(s) 473
SaqAI TTAA 5 cut(s) 294, 348, 606, 723, 744
SatI GCNGC 7 cut(s) 31, 154, 328, 378, 390, 624, 797
Sau3AI GATC 8 cut(s) 178, 289, 427, 490, 578, 629, 671, 856
Sau96I GGNCC 2 cut(s) 415, 843
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 2 cut(s) 11, 420
SduI GDGCHC 3 cut(s) 87, 473, 784
SfaNI GCATC 1 cut(s) 642
SfcI CTRYAG 2 cut(s) 454, 797
SinI GGWCC 1 cut(s) 415
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 5 cut(s) 201, 295, 553, 757, 819
SsiI CCGC 3 cut(s) 30, 389, 886
SspI AATATT 1 cut(s) 549
SspMI CTAG 4 cut(s) 522, 588, 627, 728
SstI GAGCTC 1 cut(s) 473
StyD4I CCNGG 2 cut(s) 9, 418
TaaI ACNGT 4 cut(s) 125, 273, 600, 837
TaiI ACGT 1 cut(s) 39
TaqI TCGA 3 cut(s) 266, 489, 650
TaqII GACCGA 1 cut(s) 173
TasI AATT 5 cut(s) 201, 295, 553, 757, 819
TauI GCSGC 2 cut(s) 33, 392
TfiI GAWTC 2 cut(s) 164, 907
Tru1I TTAA 5 cut(s) 294, 348, 606, 723, 744
Tru9I TTAA 5 cut(s) 294, 348, 606, 723, 744
TscAI CASTG 5 cut(s) 112, 228, 258, 412, 784
TseFI GTSAC 3 cut(s) 103, 185, 702
TseI GCWGC 5 cut(s) 153, 327, 377, 623, 796
Tsp45I GTSAC 3 cut(s) 103, 185, 702
TspDTI ATGAA 2 cut(s) 248, 447
TspGWI ACGGA 2 cut(s) 195, 654
TspRI CASTG 5 cut(s) 112, 228, 258, 412, 784
VneI GTGCAC 1 cut(s) 780
VpaK11BI GGWCC 1 cut(s) 415
XagI CCTNNNNNAGG 1 cut(s) 586
XapI RAATTY 2 cut(s) 201, 553
XbaI TCTAGA 1 cut(s) 727
XspI CTAG 4 cut(s) 522, 588, 627, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.