pycom07g22620

Luc7-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0005092
Physical Location & Seq
Forward (+)
23866077 .. 23868425
2349 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 618 bp
ATGGATGCTCAGAGAGCTCTGCTGGACGAACTTATGGGCGCAGCTCGTAATTTGACGGAGGAGGAGAGAAGGGGGTACAAGGAAATTACTTGGGATGATAAGGAGGTTTGTGGAGCCTATATGGTTCGATTTTGTCCCCACGATCTCTTCGTTAACACTCGAAGCGATCTAGGACCTTGCCCTAAACTACATGACCCAAAGTTGAAAGAAAGTTTTGAAGAGTCCCCACGGCATGATGCTTATGTGCCCAAGTTTGAAGCTGATCTTGCTCACTTTTGTGAGAAATTGGTGATGGATTTAGATAGAAGAGTAAAGCGTGGGCGAGAACGCCTTGCTCAGGAGGTGGAACCTGCACCAGCACCTCCACTGTCAGCTGAAAAGTCTGAACAGCTCTCTGTTCTGGAGGAAAAGATAAAGAACTTACTGGAACAAGCAGAGGCTCTAGGTGAAGCTGGAAAGGTGGATGAAGCTGAAGCACTGATGAGAAAGGTGGATGTGCTCAATTCTGAGAAGACAGCATTGGCTCAGCCCCAGAATGATAAAGTGTTGATGCTGGCACAGGAGAAAAAAATGGCACTTTGTGAGATCTATCCTCGGTTCATTTCTAGTGGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LUC7

Protein Analysis

206

Amino Acids

23.31

Weight (kDa)

5.14

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LUC7 PF03194 2 - 196 8.4e-65 LUC7 N_terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 358
AcoI YGGCCR 1 cut(s) 610
AcuI CTGAAG 1 cut(s) 492
AdeI CACNNNGTG 1 cut(s) 581
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 337
AgsI TTSAA 3 cut(s) 205, 218, 257
AjuI GAANNNNNNNTTGG 2 cut(s) 503, 535
AleI CACNNNNGTG 1 cut(s) 276
AluBI AGCT 7 cut(s) 17, 44, 260, 374, 391, 452, 470
AluI AGCT 7 cut(s) 17, 44, 260, 374, 391, 452, 470
Alw21I GWGCWC 2 cut(s) 19, 501
AoxI GGCC 1 cut(s) 610
ApeKI GCWGC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 2 cut(s) 301, 458
AvaII GGWCC 1 cut(s) 173
BaeGI GKGCMC 1 cut(s) 249
BalI TGGCCA 1 cut(s) 612
BanII GRGCYC 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 518
Bbv12I GWGCWC 2 cut(s) 19, 501
BbvI GCAGC 1 cut(s) 53
BccI CCATC 1 cut(s) 286
BceAI ACGGC 1 cut(s) 245
BfaI CTAG 3 cut(s) 170, 443, 606
BfuAI ACCTGC 1 cut(s) 358
BglII AGATCT 1 cut(s) 585
BisI GCNGC 1 cut(s) 42
BlpI GCTNAGC 1 cut(s) 525
BlsI GCNGC 1 cut(s) 43
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 2 cut(s) 115, 348
BmsI GCATC 2 cut(s) 226, 540
BpiI GAAGAC 1 cut(s) 518
BpmI CTGGAG 1 cut(s) 422
Bpu10I CCTNAGC 1 cut(s) 336
Bpu1102I GCTNAGC 1 cut(s) 525
BsaJI CCNNGG 2 cut(s) 227, 593
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse1I ACTGG 1 cut(s) 429
BseDI CCNNGG 2 cut(s) 227, 593
BseGI GGATG 4 cut(s) 10, 100, 469, 499
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMII CTCAG 4 cut(s) 23, 350, 498, 539
BseNI ACTGG 1 cut(s) 429
BseRI GAGGAG 2 cut(s) 74, 77
BseSI GKGCMC 1 cut(s) 249
BseXI GCAGC 1 cut(s) 53
BsgI GTGCAG 1 cut(s) 336
BshFI GGCC 1 cut(s) 612
BsiHKAI GWGCWC 2 cut(s) 19, 501
BslFI GGGAC 2 cut(s) 120, 208
BslI CCNNNNNNNGG 1 cut(s) 337
BsmFI GGGAC 2 cut(s) 120, 208
BsnI GGCC 1 cut(s) 612
Bsp1286I GDGCHC 3 cut(s) 19, 249, 501
Bsp143I GATC 4 cut(s) 142, 166, 262, 585
Bsp1720I GCTNAGC 1 cut(s) 525
BspANI GGCC 1 cut(s) 612
BspCNI CTCAG 4 cut(s) 22, 349, 499, 538
BspLI GGNNCC 2 cut(s) 115, 348
BspMI ACCTGC 1 cut(s) 358
BsrI ACTGG 1 cut(s) 429
BssECI CCNNGG 2 cut(s) 227, 593
BssMI GATC 4 cut(s) 142, 166, 262, 585
Bst4CI ACNGT 1 cut(s) 369
Bst6I CTCTTC 3 cut(s) 152, 213, 301
BstC8I GCNNGC 1 cut(s) 555
BstDEI CTNAG 4 cut(s) 9, 336, 507, 525
BstDSI CCRYGG 1 cut(s) 227
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 4 cut(s) 10, 100, 469, 499
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 4 cut(s) 145, 169, 265, 588
BstMBI GATC 4 cut(s) 142, 166, 262, 585
BstMWI GCNNNNNNNGC 2 cut(s) 14, 266
BstSLI GKGCMC 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 53
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 1 cut(s) 585
BstYI RGATCY 1 cut(s) 585
BsuRI GGCC 1 cut(s) 612
BtgI CCRYGG 1 cut(s) 227
BtsCI GGATG 4 cut(s) 10, 100, 469, 499
BtsIMutI CAGTG 2 cut(s) 365, 476
BveI ACCTGC 1 cut(s) 358
Cac8I GCNNGC 1 cut(s) 555
CfoI GCGC 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 173
Csp6I GTAC 1 cut(s) 76
CviAII CATG 2 cut(s) 191, 233
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 4 cut(s) 9, 336, 507, 525
DpnI GATC 4 cut(s) 144, 168, 264, 587
DpnII GATC 4 cut(s) 142, 166, 262, 585
DraIII CACNNNGTG 1 cut(s) 581
EaeI YGGCCR 1 cut(s) 610
Eam1104I CTCTTC 3 cut(s) 152, 213, 301
EarI CTCTTC 3 cut(s) 152, 213, 301
Ecl136II GAGCTC 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 19
Eco47I GGWCC 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 492
EcoICRI GAGCTC 1 cut(s) 17
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoO109I RGGNCCY 1 cut(s) 173
EcoT38I GRGCYC 1 cut(s) 19
FaeI CATG 2 cut(s) 194, 236
FaiI YATR 6 cut(s) 35, 120, 122, 192, 234, 243
FalI AAGNNNNNCTT 2 cut(s) 249, 281
FaqI GGGAC 2 cut(s) 120, 208
FatI CATG 2 cut(s) 190, 232
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 4 cut(s) 17, 107, 476, 506
FriOI GRGCYC 1 cut(s) 19
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 3 cut(s) 170, 443, 606
GlaI GCGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 422
HaeIII GGCC 1 cut(s) 612
HhaI GCGC 1 cut(s) 41
Hin1II CATG 2 cut(s) 194, 236
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 1 cut(s) 221
HpaI GTTAAC 1 cut(s) 154
HphI GGTGA 2 cut(s) 301, 458
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 3 cut(s) 12, 385, 508
Hpy188III TCNNGA 2 cut(s) 338, 401
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 63
HpyCH4III ACNGT 1 cut(s) 369
HpyCH4V TGCA 1 cut(s) 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 266
HpyF3I CTNAG 4 cut(s) 9, 336, 507, 525
Hsp92II CATG 2 cut(s) 194, 236
HspAI GCGC 1 cut(s) 39
KspAI GTTAAC 1 cut(s) 154
Kzo9I GATC 4 cut(s) 142, 166, 262, 585
LmnI GCTCC 1 cut(s) 113
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 2 cut(s) 226, 540
MaeI CTAG 3 cut(s) 170, 443, 606
MalI GATC 4 cut(s) 144, 168, 264, 587
MboI GATC 4 cut(s) 142, 166, 262, 585
MboII GAAGA 4 cut(s) 139, 230, 318, 523
MflI RGATCY 1 cut(s) 585
MhlI GDGCHC 3 cut(s) 19, 249, 501
MlsI TGGCCA 1 cut(s) 612
MluCI AATT 4 cut(s) 49, 84, 284, 502
MluNI TGGCCA 1 cut(s) 612
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 8 cut(s) 52, 55, 97, 334, 372, 397, 430, 603
Mox20I TGGCCA 1 cut(s) 612
MscI TGGCCA 1 cut(s) 612
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 276
Msp20I TGGCCA 1 cut(s) 612
MspA1I CMGCKG 1 cut(s) 374
MwoI GCNNNNNNNGC 2 cut(s) 14, 266
NdeII GATC 4 cut(s) 142, 166, 262, 585
NlaIII CATG 2 cut(s) 194, 236
NlaIV GGNNCC 2 cut(s) 115, 348
OliI CACNNNNGTG 1 cut(s) 276
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
PpuMI RGGWCCY 1 cut(s) 173
Psp124BI GAGCTC 1 cut(s) 19
Psp5II RGGWCCY 1 cut(s) 173
PspN4I GGNNCC 2 cut(s) 115, 348
PspPI GGNCC 1 cut(s) 173
PspPPI RGGWCCY 1 cut(s) 173
PsuI RGATCY 1 cut(s) 585
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
RseI CAYNNNNRTG 1 cut(s) 276
SacI GAGCTC 1 cut(s) 19
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 4 cut(s) 142, 166, 262, 585
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 1 cut(s) 230
SduI GDGCHC 3 cut(s) 19, 249, 501
SfaNI GCATC 2 cut(s) 226, 540
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 276
Sse9I AATT 4 cut(s) 49, 84, 284, 502
SspMI CTAG 3 cut(s) 170, 443, 606
SstI GAGCTC 1 cut(s) 19
TaaI ACNGT 1 cut(s) 369
TaqI TCGA 2 cut(s) 127, 160
TasI AATT 4 cut(s) 49, 84, 284, 502
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 2 cut(s) 372, 483
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 2 cut(s) 480, 589
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 2 cut(s) 372, 483
VpaK11BI GGWCC 1 cut(s) 173
XagI CCTNNNNNAGG 1 cut(s) 335
XspI CTAG 3 cut(s) 170, 443, 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.