Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004088

Physical Location & Seq

Genomic Coordinates Forward (+)

26237214 .. 26238705

Gene Structure 1492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g26150.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGCCAGTGACCGACCCTAATTTGACACAAAGTCTTGATGACTGTGTTCTTTTCCCACTTGAAGAGATTGTGCAATACCCGTTGCCGGGATACATTGCTCCCACTTCAATCAGTTTCAGTCCCGATGATACTATTATAACTTATTTGTTCAGTCCTGATCACACATTGAATCGAAAGGTATTTGCTTTCGATCTCAAAACTGGCAAGCAAGAGTTGTGTTTCAGTCCCCCTGATGGCGGACTTGACGAGAGTAATATATCACCAGAAGAAAAGTTGAGGAGAGAGAGGTTGAGGGAGCGCGGGTTGGGAGTGACACGGTATGAATGGGTGAAGACAAGCTCGAAAGGGAAAGCAATCATGGTGCCATTGCCAGCTGGGATTTATTTCCAGGATCTTTCTAGTTCAAATGCCGAGCTTAATCTTCCGAGGGCATCAGGTTCACCAATTATTGATCCACATCTGTCACCAGATGGTACAATGGTCGGTTATGTAAGAGATTGCGAGTTGCACGTTCTAAATTTGTTATACAATGAATCTATACAGTTAACGTATGGTGCCAGAGGAGATGTTTTGACGCATGGCCTTGCTGAATATATAGCTCAGGTGAGAAGAAGAAATGGATCGATCCAGCAGCTTAAGTACAAGAATGGTTACTGGTGGTCTCTAGACAGCAAATTCATTGCATTCACAGAAGTTGATTCTTCTGAGATTCCGCTTTTCAGAATCATGCATCAAGGTAAAAGCTCTGTTGGTTCAGAAGCTCAAGAAGATCATGCCTATCCCTTTGCGGGAGCTTCAAATGTCAAAGTTCGCCTAGGCGTGGTTTCTTCTGCTGGAGGCCCTATTACTTGGATGGATCTTCTGTGTGGGGGAACAGGTCAACCAGATAGTGAGGACGAATATCTGGCAAGAGTAAATTGGATGCATGGAAATACTTTAATAGCTCAGGTTATAAACAGATCACACAGCAGATTAAAGATGATCCAAACCTTAAATTCGATATTAAAACTGGGAAGCGAAAAGTTTTATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04974 map04974

Pfam Domains

Protein Families

DPPIV_N Peptidase_S9

Protein Analysis

345

Amino Acids

38.42

Weight (kDa)

5.66

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24260 AT5G24260 AT5G24260 AT5G24260 AT5G24260
fragaria_vesca	FvH4_7g31630 FvH4_7g31630 FvH4_7g31630 FvH4_7g31630 FvH4_7g31630 FvH4_7g31630
malus_domestica	MD07G1288900.v1.1
prunus_persica	Prupe.2G310400_v2.0.a1 Prupe.2G310400_v2.0.a1 Prupe.2G310400_v2.0.a1
pyrus_communis	pycom01g22900 pycom07g26150 pycom07g26160
rosa_chinensis	RchiOBHm_Chr1g0380701
rosa_laevigata	RLG00000026277
rosa_multiflora	Rmu_co8317175.1_g000001 Rmu_co8479769.1_g000001 Rmu_sc0001637.1_g000009
rosa_roxburghii	Rroxscaffold_4G00279100
rosa_rugosa	Rorug01G0423600 Rorug01G0423700 Rorug01G0423700
rosa_samantha	Rh1AG447900 Rh1BG403300 Rh1CG417500 Rh1DG433600
rosa_wichuraiana	Rw0G005860 Rw1G038980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	137, 953
AccB1I	GGYRCC	2 cut(s)	361, 554
AccII	CGCG	1 cut(s)	300
AciI	CCGC	4 cut(s)	237, 300, 713, 788
AclWI	GGATC	6 cut(s)	399, 446, 619, 628, 864, 976
AcsI	RAATTY	3 cut(s)	517, 674, 994
AfaI	GTAC	2 cut(s)	475, 641
AfiI	CCNNNNNNNGG	6 cut(s)	85, 86, 233, 236, 788, 820
AflII	CTTAAG	1 cut(s)	635
AgsI	TTSAA	5 cut(s)	62, 108, 169, 405, 798
AhdI	GACNNNNNGTC	1 cut(s)	30
AjnI	CCWGG	1 cut(s)	387
AluBI	AGCT	9 cut(s)	339, 374, 415, 599, 634, 744, 761, 794, 944
AluI	AGCT	9 cut(s)	339, 374, 415, 599, 634, 744, 761, 794, 944
Alw26I	GTCTC	1 cut(s)	666
AlwI	GGATC	6 cut(s)	399, 446, 619, 628, 864, 976
AoxI	GGCC	2 cut(s)	580, 838
ApeKI	GCWGC	1 cut(s)	631
ApoI	RAATTY	3 cut(s)	517, 674, 994
AspA2I	CCTAGG	1 cut(s)	814
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	839
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	5 cut(s)	252, 340, 432, 456, 616
AvrII	CCTAGG	1 cut(s)	814
BaeI	ACNNNNGTAYC	2 cut(s)	465, 498
BanI	GGYRCC	2 cut(s)	361, 554
BbsI	GAAGAC	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	643
BccI	CCATC	3 cut(s)	227, 464, 847
BciT130I	CCWGG	1 cut(s)	389
BciVI	GTATCC	1 cut(s)	83
BclI	TGATCA	1 cut(s)	157
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	666
BfaI	CTAG	3 cut(s)	399, 665, 815
BfrI	CTTAAG	1 cut(s)	635
BfuI	GTATCC	1 cut(s)	83
BisI	GCNGC	1 cut(s)	632
BlnI	CCTAGG	1 cut(s)	814
BlsI	GCNGC	1 cut(s)	633
Bme1390I	CCNGG	2 cut(s)	87, 389
BmeRI	GACNNNNNGTC	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	839
BmiI	GGNNCC	2 cut(s)	363, 556
BmrFI	CCNGG	2 cut(s)	87, 389
BmrI	ACTGGG	1 cut(s)	1019
BmsI	GCATC	3 cut(s)	440, 739, 912
BmuI	ACTGGG	1 cut(s)	1019
BpiI	GAAGAC	1 cut(s)	338
BpmI	CTGGAG	1 cut(s)	855
Bpu10I	CCTNAGC	2 cut(s)	600, 945
BpuEI	CTTGAG	1 cut(s)	747
BpuMI	CCSGG	1 cut(s)	87
Bsa29I	ATCGAT	1 cut(s)	623
BsaBI	GATNNNNATC	1 cut(s)	456
BsaI	GGTCTC	1 cut(s)	666
BsaJI	CCNNGG	2 cut(s)	425, 814
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	6 cut(s)	85, 86, 233, 236, 788, 820
Bse1I	ACTGG	4 cut(s)	5, 205, 659, 1014
Bse3DI	GCAATG	3 cut(s)	93, 365, 678
Bse8I	GATNNNNATC	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	389
BseCI	ATCGAT	1 cut(s)	623
BseDI	CCNNGG	2 cut(s)	425, 814
BseGI	GGATG	2 cut(s)	858, 927
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	6 cut(s)	85, 86, 233, 236, 788, 820
BseMI	GCAATG	3 cut(s)	93, 365, 678
BseMII	CTCAG	3 cut(s)	614, 696, 959
BseNI	ACTGG	4 cut(s)	5, 205, 659, 1014
BseRI	GAGGAG	2 cut(s)	292, 576
BseXI	GCAGC	1 cut(s)	643
BseYI	CCCAGC	1 cut(s)	374
Bsh1236I	CGCG	1 cut(s)	300
BshFI	GGCC	2 cut(s)	582, 840
BshNI	GGYRCC	2 cut(s)	361, 554
BshVI	ATCGAT	1 cut(s)	623
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	2 cut(s)	105, 210
BslI	CCNNNNNNNGG	6 cut(s)	85, 86, 233, 236, 788, 820
BsmAI	GTCTC	1 cut(s)	666
BsmFI	GGGAC	2 cut(s)	105, 210
BsmI	GAATGC	1 cut(s)	683
BsnI	GGCC	2 cut(s)	582, 840
Bso31I	GGTCTC	1 cut(s)	666
BspACI	CCGC	4 cut(s)	237, 300, 713, 788
BspANI	GGCC	2 cut(s)	582, 840
BspCNI	CTCAG	3 cut(s)	613, 697, 958
BspDI	ATCGAT	1 cut(s)	623
BspFNI	CGCG	1 cut(s)	300
BspLI	GGNNCC	2 cut(s)	363, 556
BspPI	GGATC	6 cut(s)	399, 446, 619, 628, 864, 976
BspT107I	GGYRCC	2 cut(s)	361, 554
BspTI	CTTAAG	1 cut(s)	635
BspTNI	GGTCTC	1 cut(s)	666
BsrDI	GCAATG	3 cut(s)	93, 365, 678
BsrI	ACTGG	4 cut(s)	5, 205, 659, 1014
BssECI	CCNNGG	2 cut(s)	425, 814
BssT1I	CCWWGG	1 cut(s)	814
Bst2UI	CCWGG	1 cut(s)	389
Bst4CI	ACNGT	3 cut(s)	44, 318, 543
Bst6I	CTCTTC	1 cut(s)	57
BstAFI	CTTAAG	1 cut(s)	635
BstC8I	GCNNGC	2 cut(s)	206, 372
BstDEI	CTNAG	3 cut(s)	600, 705, 945
BstF5I	GGATG	2 cut(s)	858, 927
BstFNI	CGCG	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	300
BstMAI	GTCTC	1 cut(s)	666
BstNI	CCWGG	1 cut(s)	389
BstSCI	CCNGG	2 cut(s)	85, 387
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	643
BstV2I	GAAGAC	1 cut(s)	338
BstX2I	RGATCY	2 cut(s)	391, 856
BstYI	RGATCY	2 cut(s)	391, 856
Bsu15I	ATCGAT	1 cut(s)	623
BsuI	GTATCC	1 cut(s)	83
BsuRI	GGCC	2 cut(s)	582, 840
BsuTUI	ATCGAT	1 cut(s)	623
BtsCI	GGATG	2 cut(s)	858, 927
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	2 cut(s)	206, 372
CfoI	GCGC	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	839
ClaI	ATCGAT	1 cut(s)	623
CseI	GACGC	1 cut(s)	583
Csp6I	GTAC	2 cut(s)	474, 640
CviAII	CATG	5 cut(s)	358, 578, 727, 773, 926
CviQI	GTAC	2 cut(s)	474, 640
DdeI	CTNAG	3 cut(s)	600, 705, 945
DriI	GACNNNNNGTC	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	57
Eam1105I	GACNNNNNGTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	57
EciI	GGCGGA	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	814
Eco31I	GGTCTC	1 cut(s)	666
EcoO109I	RGGNCCY	1 cut(s)	839
EcoRII	CCWGG	1 cut(s)	387
EcoT14I	CCWWGG	1 cut(s)	814
EcoT22I	ATGCAT	2 cut(s)	732, 927
ErhI	CCWWGG	1 cut(s)	814
FaeI	CATG	5 cut(s)	361, 581, 730, 776, 929
FaqI	GGGAC	2 cut(s)	105, 210
FatI	CATG	5 cut(s)	357, 577, 726, 772, 925
FauI	CCCGC	2 cut(s)	293, 781
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	1 cut(s)	632
FokI	GGATG	2 cut(s)	865, 934
Fsp4HI	GCNGC	1 cut(s)	632
FspBI	CTAG	3 cut(s)	399, 665, 815
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	1 cut(s)	632
GsaI	CCCAGC	1 cut(s)	378
GsuI	CTGGAG	1 cut(s)	855
HaeIII	GGCC	2 cut(s)	582, 840
HapII	CCGG	1 cut(s)	86
HgaI	GACGC	1 cut(s)	583
HhaI	GCGC	1 cut(s)	300
Hin1II	CATG	5 cut(s)	361, 581, 730, 776, 929
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HincII	GTYRAC	2 cut(s)	546, 881
HindII	GTYRAC	2 cut(s)	546, 881
HinfI	GANTC	5 cut(s)	169, 533, 698, 709, 723
HpaI	GTTAAC	1 cut(s)	546
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	5 cut(s)	252, 340, 432, 456, 616
Hpy166II	GTNNAC	3 cut(s)	440, 546, 881
Hpy188I	TCNGA	4 cut(s)	426, 706, 722, 757
Hpy188III	TCNNGA	5 cut(s)	35, 122, 155, 665, 764
Hpy8I	GTNNAC	3 cut(s)	440, 546, 881
HpyCH4III	ACNGT	3 cut(s)	44, 318, 543
HpyCH4IV	ACGT	2 cut(s)	510, 548
HpyCH4V	TGCA	5 cut(s)	73, 508, 683, 730, 925
HpyF3I	CTNAG	3 cut(s)	600, 705, 945
HpySE526I	ACGT	2 cut(s)	510, 548
Hsp92II	CATG	5 cut(s)	361, 581, 730, 776, 929
HspAI	GCGC	1 cut(s)	298
Ksp22I	TGATCA	1 cut(s)	157
KspAI	GTTAAC	1 cut(s)	546
LmnI	GCTCC	3 cut(s)	103, 295, 791
Lsp1109I	GCAGC	1 cut(s)	643
LweI	GCATC	3 cut(s)	440, 739, 912
MaeI	CTAG	3 cut(s)	399, 665, 815
MaeII	ACGT	2 cut(s)	510, 548
MaeIII	GTNAC	4 cut(s)	7, 310, 462, 650
MflI	RGATCY	2 cut(s)	391, 856
MluCI	AATT	6 cut(s)	19, 444, 517, 674, 916, 994
MnlI	CCTC	7 cut(s)	270, 279, 285, 420, 554, 830, 886
Mph1103I	ATGCAT	2 cut(s)	732, 927
MseI	TTAA	7 cut(s)	417, 545, 636, 938, 974, 992, 1004
MspA1I	CMGCKG	1 cut(s)	374
MspCI	CTTAAG	1 cut(s)	635
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	2 cut(s)	87, 389
Mva1269I	GAATGC	1 cut(s)	683
MvaI	CCWGG	1 cut(s)	389
MvnI	CGCG	1 cut(s)	300
NciI	CCSGG	1 cut(s)	87
NlaIII	CATG	5 cut(s)	361, 581, 730, 776, 929
NlaIV	GGNNCC	2 cut(s)	363, 556
NmeAIII	GCCGAG	1 cut(s)	436
NmuCI	GTSAC	3 cut(s)	7, 310, 462
NsiI	ATGCAT	2 cut(s)	732, 927
PctI	GAATGC	1 cut(s)	683
PfeI	GAWTC	5 cut(s)	169, 533, 698, 709, 723
PfoI	TCCNGGA	1 cut(s)	387
PkrI	GCNGC	1 cut(s)	633
PsiI	TTATAA	2 cut(s)	137, 953
Psp6I	CCWGG	1 cut(s)	387
PspFI	CCCAGC	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	387
PspN4I	GGNNCC	2 cut(s)	363, 556
PspPI	GGNCC	1 cut(s)	839
PsuI	RGATCY	2 cut(s)	391, 856
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	2 cut(s)	475, 641
RsaNI	GTAC	2 cut(s)	474, 640
SaqAI	TTAA	7 cut(s)	417, 545, 636, 938, 974, 992, 1004
SatI	GCNGC	1 cut(s)	632
Sau96I	GGNCC	1 cut(s)	839
ScrFI	CCNGG	2 cut(s)	87, 389
SfaNI	GCATC	3 cut(s)	440, 739, 912
SmlI	CTYRAG	2 cut(s)	635, 762
SmoI	CTYRAG	2 cut(s)	635, 762
Sse9I	AATT	6 cut(s)	19, 444, 517, 674, 916, 994
SsiI	CCGC	4 cut(s)	237, 300, 713, 788
SspMI	CTAG	3 cut(s)	399, 665, 815
StyD4I	CCNGG	2 cut(s)	85, 387
StyI	CCWWGG	1 cut(s)	814
TaaI	ACNGT	3 cut(s)	44, 318, 543
TaiI	ACGT	2 cut(s)	513, 551
TaqI	TCGA	5 cut(s)	172, 189, 341, 623, 998
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	6 cut(s)	19, 444, 517, 674, 916, 994
TatI	WGTACW	1 cut(s)	639
TfiI	GAWTC	5 cut(s)	169, 533, 698, 709, 723
Tru1I	TTAA	7 cut(s)	417, 545, 636, 938, 974, 992, 1004
Tru9I	TTAA	7 cut(s)	417, 545, 636, 938, 974, 992, 1004
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	3 cut(s)	7, 310, 462
TseI	GCWGC	1 cut(s)	631
Tsp45I	GTSAC	3 cut(s)	7, 310, 462
TspDTI	ATGAA	3 cut(s)	336, 546, 667
TspRI	CASTG	1 cut(s)	12
Vha464I	CTTAAG	1 cut(s)	635
XapI	RAATTY	3 cut(s)	517, 674, 994
XbaI	TCTAGA	1 cut(s)	664
XmaJI	CCTAGG	1 cut(s)	814
XspI	CTAG	3 cut(s)	399, 665, 815
Zsp2I	ATGCAT	2 cut(s)	732, 927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.