Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004088

Physical Location & Seq

Genomic Coordinates Forward (+)

66777908 .. 66781098

Gene Structure 3191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG447900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2319 bp

ATGCAATCAGCTGGTGAGAACAATAAGAAGAAGAAATTGAAGTTAAGTTGCGAAATGCCGGTCACGGACTCTAATTTTTCACAGAAACTGGATGACTGTATTGTGTTTCCTATTGAGGAGATTGTGCAGCAGCCTCTGCCTGGATGTGTTGCTCCTGCATCGATTAGTTTTAGTGGTGATGATAGCATTGTGACGTATCTGTTTAGTCCTGATCAGAGTTTGAATAGGAAGGTGTTTAAATTTGACCTCAAGAGTTGTGTGGAAGAGCTGTGTTTCAGTCCTCCGGATGGGGGACTTGATGAGAGCAATATATCCGCGGAGGAGAAGTTGAGGAGGGAGAGGTTGAGGGAGCGGGGGTTGGGAGTGACAAGGTATGAGTGGGTGAAGACAAGCTCGGTTAAGAAAGCAATCATGGTGCCATTGCCAGCTGGGATTTATTTCCAGGATCTTTCCTGTTCAGAACCGGAGCTCAAGATTCCAAGCACACAGTCTTCACCAATTATTGATCCCCATCTGTCCCCAGATGGTACAATGCTTGGTTATGTAAAAGACAGCGAGTTGCATGTTCTAAATTTGTTGTACAATGAATCAAAAAAGCTTACATCTGGTGCTAGAGGAGATGTTTTGACTCATGGCCTTGCTGAATATATAGCGCAGGAAGAAATGGACCGCAAGAATGGATACTGGTGGTCTCTAGACAGCAAATTCATTGCATTCACAGAAGTTGATTCCTCTGAGATTCCTCTCTTCAGAATCATGCATCAAGGTAAAAGTTCTGTTGGTTTAGAAGCTCAAGAAGATCACCCTTATCCCTTTGCGGGAGCTTCAAATGTCAAAGTTCGCCTCGGAGTAGTTTCCTCTGCTGGAGGTCCTGTTACTTGGATGGAGCTTCTCTGTGGGGGTACAGATCAACCAGACAATGAGGAGGAATATCTGGCAAGAGTAAATTGGATGCATGGAAATGTTCTAATAGCTCAGGTTTTGAACAGGTCGCACAGCAGACTAAAGATCCTTAAGTTTGACATTAAAAATGGGAAGAGAAAGGTTTTATTGGTAGAAGAACAACGCACATGGATCAACTTACATGACTGTTTTACACCTCTAGACAAAGGACTAACCAAATTTTCTGGGGGATTTATCTGGGCAAGTGAGAAATCAGGATTCAAACATCTTTACCTGCATGATGCCAATGGGACATGCTTAGGTCCTATCACTGAAGGAGAATGGATGGTCGAGCAAATTGCTGGTGTAAATGAAGCTGCTGGTCTTGTTTATTTCACTGGAACTTTGGATGGGCCTTTAGAAGCACACCTTTATTGTACTAAACTATTCACAGATGGAAGCCAAACCTTGGAAGCTCCAGTGAAGTTGACTCGCAACAAGGGGAGGCATGTCGTCGTGCTTGATCATCATATGAGGAATTTTGTAGATATCCATGACTCCCTAGATTTTCCTCCCAAGGTTTTACTCTGCTCCTTGCACAATGGAAGCATCATTATGCCTCTATATGAGCAGCCATTCACAATTCCAAGATTCAAAAGGCTTCAACTTGAGCCACCAGAGTTGGTTCATTTACAGGCTAATGATGGGTCAACGTTGTATGGGGCTCTATACAAGCCTGATGCAGCAAAATTTGGACCTCCACCTTATAAAACGATGATCTACGTGTATGGTGGACCATGCGTCCAGCTTATTTCTGATTCTTGGATAAGTACAGTTGACATGAGAGCACAGTTTCTAAGAAGCAAAGGCATCTTAGTATGGAAGTTGGATAACAGAGGAACTGCTCGACGCGGACTAAAGTTTGAAGGCTCTTTAAAACACAATGCTGGTCGTGTTGATTCTGACGATCAACTGACTGGGGCCCAGTGGCTTATAGACAAAGGGCTTGCAGAAGCAGGTCACATTGGATTGTATGGTTGGAGCTATGGTGGGTATCTTTCAGCGATGACTTTGGCCAGGTATCCTGATGTGTTCCGATGTGCAGTGTCCGGTGCCCCCGTTACAGCGTGGGATGGGTATGACACATTCTATACTGAGAAATATATGGGACTTCCTTCTGAGAATGAAAAGAGTTACGAGTATAGCTCATTGATGCACCATGTGCACAAGATGAAAGGAAAATTGTTACTCGTGCACGGAATGATTGATGAAAATGTGCATTTCAGACACACTGCCAGGCTTGTCAATGCACTTATTGCAGCTAGGAAGACTTACGAACTGTTAATTTTCCCGGATGAACGGCACATGCCACGTCGGCTTAGTGATCGGGTTTATATGGAAGAAAGAATTTGGGAATTCATAGAAAGAAACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04974 map04974

Pfam Domains

Protein Families

DPPIV_N Peptidase_S9

Protein Analysis

772

Amino Acids

87.0

Weight (kDa)

6.25

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPPIV_N	PF00930	135 - 486	1.6e-78	Dipeptidyl peptidase IV (DPP IV) N-terminal region
Peptidase_S9	PF00326	573 - 772	5.4e-54	Prolyl oligopeptidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24260 AT5G24260 AT5G24260 AT5G24260 AT5G24260
fragaria_vesca	FvH4_7g31630 FvH4_7g31630 FvH4_7g31630 FvH4_7g31630 FvH4_7g31630 FvH4_7g31630
malus_domestica	MD07G1288900.v1.1
prunus_persica	Prupe.2G310400_v2.0.a1 Prupe.2G310400_v2.0.a1 Prupe.2G310400_v2.0.a1
pyrus_communis	pycom01g22900 pycom07g26150 pycom07g26160
rosa_chinensis	RchiOBHm_Chr1g0380701
rosa_laevigata	RLG00000026277
rosa_multiflora	Rmu_co8317175.1_g000001 Rmu_co8479769.1_g000001 Rmu_sc0001637.1_g000009
rosa_roxburghii	Rroxscaffold_4G00279100
rosa_rugosa	Rorug01G0423600 Rorug01G0423700 Rorug01G0423700
rosa_samantha	Rh1AG447900 Rh1BG403300 Rh1CG417500 Rh1DG433600
rosa_wichuraiana	Rw0G005860 Rw1G038980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1650
Acc36I	ACCTGC	2 cut(s)	1185, 1889
AccB1I	GGYRCC	2 cut(s)	415, 1994
AccB7I	CCANNNNNTGG	1 cut(s)	1351
AccBSI	CCGCTC	1 cut(s)	352
AccII	CGCG	2 cut(s)	317, 1794
AccIII	TCCGGA	1 cut(s)	283
AciI	CCGC	6 cut(s)	315, 317, 352, 670, 818, 1794
AclI	AACGTT	1 cut(s)	1595
AclWI	GGATC	4 cut(s)	453, 500, 1003, 1082
AcoI	YGGCCR	1 cut(s)	1956
AcsI	RAATTY	8 cut(s)	239, 571, 704, 1121, 1420, 1631, 2289, 2297
AcuI	CTGAAG	2 cut(s)	733, 1236
AdeI	CACNNNGTG	1 cut(s)	2104
AfaI	GTAC	5 cut(s)	529, 581, 904, 1321, 1714
AfiI	CCNNNNNNNGG	5 cut(s)	140, 287, 290, 818, 1351
AflII	CTTAAG	1 cut(s)	1013
AflIII	ACRYGT	1 cut(s)	1665
AgsI	TTSAA	8 cut(s)	40, 223, 828, 985, 1165, 1537, 1547, 1808
AhdI	GACNNNNNGTC	1 cut(s)	1682
AjiI	CACGTC	1 cut(s)	2255
AjnI	CCWGG	4 cut(s)	139, 441, 1958, 2177
Alw21I	GWGCWC	4 cut(s)	471, 1732, 2109, 2139
Alw26I	GTCTC	1 cut(s)	696
Alw44I	GTGCAC	2 cut(s)	2105, 2135
AlwI	GGATC	4 cut(s)	453, 500, 1003, 1082
AlwNI	CAGNNNCTG	2 cut(s)	88, 136
Aor13HI	TCCGGA	1 cut(s)	283
AoxI	GGCC	4 cut(s)	634, 1295, 1863, 1956
ApaI	GGGCCC	1 cut(s)	1867
ApaLI	GTGCAC	2 cut(s)	2105, 2135
ApeKI	GCWGC	6 cut(s)	127, 130, 1259, 1513, 1625, 2201
ApoI	RAATTY	8 cut(s)	239, 571, 704, 1121, 1420, 1631, 2289, 2297
ArsI	GACNNNNNNTTYG	2 cut(s)	45, 77
AspLEI	GCGC	1 cut(s)	655
AspS9I	GGNCC	8 cut(s)	667, 869, 1205, 1295, 1637, 1676, 1863, 1864
AsuC2I	CCSGG	1 cut(s)	2234
AsuHPI	GGTGA	5 cut(s)	26, 188, 394, 486, 794
AvaII	GGWCC	5 cut(s)	667, 869, 1205, 1637, 1676
BaeGI	GKGCMC	4 cut(s)	1867, 1999, 2109, 2139
BalI	TGGCCA	1 cut(s)	1958
BanI	GGYRCC	2 cut(s)	415, 1994
BanII	GRGCYC	3 cut(s)	471, 1609, 1867
BauI	CACGAG	1 cut(s)	2132
BbsI	GAAGAC	3 cut(s)	392, 483, 2216
Bbv12I	GWGCWC	4 cut(s)	471, 1732, 2109, 2139
BbvI	GCAGC	6 cut(s)	139, 142, 1246, 1525, 1637, 2213
BccI	CCATC	9 cut(s)	281, 518, 519, 877, 1222, 1286, 1331, 1580, 2009
BceAI	ACGGC	1 cut(s)	2258
BcgI	CGANNNNNNTGC	2 cut(s)	1223, 1257
BciT130I	CCWGG	4 cut(s)	141, 443, 1960, 2179
BciVI	GTATCC	2 cut(s)	674, 1974
BclI	TGATCA	2 cut(s)	211, 1405
BcnI	CCSGG	1 cut(s)	2234
BcoDI	GTCTC	1 cut(s)	696
BfaI	CTAG	5 cut(s)	612, 695, 1103, 1445, 2205
BfrI	CTTAAG	1 cut(s)	1013
BfuAI	ACCTGC	2 cut(s)	1185, 1889
BfuI	GTATCC	2 cut(s)	674, 1974
BglI	GCCNNNNNGGC	1 cut(s)	2257
BisI	GCNGC	6 cut(s)	128, 131, 1260, 1514, 1626, 2202
BlsI	GCNGC	6 cut(s)	129, 132, 1261, 1515, 1627, 2203
Bme1390I	CCNGG	5 cut(s)	141, 443, 1960, 2179, 2234
Bme18I	GGWCC	5 cut(s)	667, 869, 1205, 1637, 1676
BmeRI	GACNNNNNGTC	1 cut(s)	1682
BmgBI	CACGTC	1 cut(s)	2255
BmgT120I	GGNCC	8 cut(s)	667, 869, 1205, 1295, 1637, 1676, 1863, 1864
BmiI	GGNNCC	4 cut(s)	417, 1864, 1865, 1996
BmrFI	CCNGG	5 cut(s)	141, 443, 1960, 2179, 2234
BmrI	ACTGGG	2 cut(s)	1861, 1869
BmsI	GCATC	8 cut(s)	167, 769, 942, 1174, 1500, 1612, 1761, 2085
BmuI	ACTGGG	2 cut(s)	1861, 1869
BpiI	GAAGAC	3 cut(s)	392, 483, 2216
BplI	GAGNNNNNCTC	2 cut(s)	2072, 2104
BpmI	CTGGAG	2 cut(s)	885, 1344
Bpu10I	CCTNAGC	2 cut(s)	975, 1201
BpuEI	CTTGAG	4 cut(s)	233, 455, 777, 1571
BpuMI	CCSGG	1 cut(s)	2234
Bsa29I	ATCGAT	1 cut(s)	161
BsaAI	YACGTR	1 cut(s)	1666
BsaBI	GATNNNNATC	1 cut(s)	510
BsaI	GGTCTC	1 cut(s)	696
BsaJI	CCNNGG	4 cut(s)	315, 844, 1350, 1458
BsaWI	WCCGGW	3 cut(s)	283, 463, 1991
BsaXI	ACNNNNNCTCC	8 cut(s)	311, 341, 341, 371, 858, 888, 1915, 1945
Bsc4I	CCNNNNNNNGG	5 cut(s)	140, 287, 290, 818, 1351
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	6 cut(s)	93, 689, 1285, 1361, 1864, 1867
Bse3DI	GCAATG	2 cut(s)	419, 708
Bse8I	GATNNNNATC	1 cut(s)	510
BseAI	TCCGGA	1 cut(s)	283
BseBI	CCWGG	4 cut(s)	141, 443, 1960, 2179
BseCI	ATCGAT	1 cut(s)	161
BseDI	CCNNGG	4 cut(s)	315, 844, 1350, 1458
BseGI	GGATG	9 cut(s)	97, 149, 292, 888, 957, 1233, 1297, 2020, 2242
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	5 cut(s)	140, 287, 290, 818, 1351
BseMI	GCAATG	2 cut(s)	419, 708
BseMII	CTCAG	4 cut(s)	726, 989, 2028, 2052
BseNI	ACTGG	6 cut(s)	93, 689, 1285, 1361, 1864, 1867
BseRI	GAGGAG	5 cut(s)	131, 335, 346, 630, 938
BseSI	GKGCMC	4 cut(s)	1867, 1999, 2109, 2139
BseXI	GCAGC	6 cut(s)	139, 142, 1246, 1525, 1637, 2213
BseYI	CCCAGC	1 cut(s)	428
BsgI	GTGCAG	2 cut(s)	146, 2004
Bsh1236I	CGCG	2 cut(s)	317, 1794
BshFI	GGCC	4 cut(s)	636, 1297, 1865, 1958
BshNI	GGYRCC	2 cut(s)	415, 1994
BshVI	ATCGAT	1 cut(s)	161
BsiHKAI	GWGCWC	4 cut(s)	471, 1732, 2109, 2139
BsiSI	CCGG	5 cut(s)	59, 284, 464, 1992, 2234
BslFI	GGGAC	4 cut(s)	306, 502, 1207, 2064
BslI	CCNNNNNNNGG	5 cut(s)	140, 287, 290, 818, 1351
BsmAI	GTCTC	1 cut(s)	696
BsmFI	GGGAC	4 cut(s)	306, 502, 1207, 2064
BsmI	GAATGC	1 cut(s)	713
BsnI	GGCC	4 cut(s)	636, 1297, 1865, 1958
Bso31I	GGTCTC	1 cut(s)	696
Bsp120I	GGGCCC	1 cut(s)	1863
Bsp1286I	GDGCHC	7 cut(s)	471, 1609, 1732, 1867, 1999, 2109, 2139
Bsp13I	TCCGGA	1 cut(s)	283
Bsp1407I	TGTACA	1 cut(s)	579
BspACI	CCGC	6 cut(s)	315, 317, 352, 670, 818, 1794
BspANI	GGCC	4 cut(s)	636, 1297, 1865, 1958
BspCNI	CTCAG	4 cut(s)	727, 988, 2029, 2053
BspDI	ATCGAT	1 cut(s)	161
BspEI	TCCGGA	1 cut(s)	283
BspFNI	CGCG	2 cut(s)	317, 1794
BspLI	GGNNCC	4 cut(s)	417, 1864, 1865, 1996
BspMI	ACCTGC	2 cut(s)	1185, 1889
BspPI	GGATC	4 cut(s)	453, 500, 1003, 1082
BspQI	GCTCTTC	1 cut(s)	258
BspT107I	GGYRCC	2 cut(s)	415, 1994
BspTI	CTTAAG	1 cut(s)	1013
BspTNI	GGTCTC	1 cut(s)	696
BsrBI	CCGCTC	1 cut(s)	352
BsrDI	GCAATG	2 cut(s)	419, 708
BsrFI	RCCGGY	1 cut(s)	58
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	6 cut(s)	93, 689, 1285, 1361, 1864, 1867
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	4 cut(s)	315, 844, 1350, 1458
BssSI	CACGAG	1 cut(s)	2132
BssT1I	CCWWGG	2 cut(s)	1350, 1458
Bst2BI	CACGAG	1 cut(s)	2132
Bst2UI	CCWGG	4 cut(s)	141, 443, 1960, 2179
Bst4CI	ACNGT	6 cut(s)	98, 489, 1091, 1717, 1734, 2223
Bst6I	CTCTTC	3 cut(s)	258, 752, 1031
BstAFI	CTTAAG	1 cut(s)	1013
BstAPI	GCANNNNNTGC	3 cut(s)	136, 2104, 2198
BstAUI	TGTACA	1 cut(s)	579
BstBAI	YACGTR	1 cut(s)	1666
BstC8I	GCNNGC	2 cut(s)	426, 1890
BstDEI	CTNAG	8 cut(s)	735, 975, 1201, 1739, 1756, 2037, 2061, 2261
BstDSI	CCRYGG	1 cut(s)	315
BstF5I	GGATG	9 cut(s)	97, 149, 292, 888, 957, 1233, 1297, 2020, 2242
BstFNI	CGCG	2 cut(s)	317, 1794
BstHHI	GCGC	1 cut(s)	655
BstMAI	GTCTC	1 cut(s)	696
BstMWI	GCNNNNNNNGC	4 cut(s)	136, 2104, 2198, 2257
BstNI	CCWGG	4 cut(s)	141, 443, 1960, 2179
BstNSI	RCATGY	4 cut(s)	566, 1200, 1394, 2251
BstSCI	CCNGG	5 cut(s)	139, 441, 1958, 2177, 2232
BstSLI	GKGCMC	4 cut(s)	1867, 1999, 2109, 2139
BstUI	CGCG	2 cut(s)	317, 1794
BstV1I	GCAGC	6 cut(s)	139, 142, 1246, 1525, 1637, 2213
BstV2I	GAAGAC	3 cut(s)	392, 483, 2216
BstX2I	RGATCY	2 cut(s)	445, 1008
BstYI	RGATCY	2 cut(s)	445, 1008
Bsu15I	ATCGAT	1 cut(s)	161
BsuI	GTATCC	2 cut(s)	674, 1974
BsuRI	GGCC	4 cut(s)	636, 1297, 1865, 1958
BsuTUI	ATCGAT	1 cut(s)	161
BtgI	CCRYGG	1 cut(s)	315
BtgZI	GCGATG	1 cut(s)	1961
BtrI	CACGTC	1 cut(s)	2255
BtsCI	GGATG	9 cut(s)	97, 149, 292, 888, 957, 1233, 1297, 2020, 2242
BtsI	GCAGTG	2 cut(s)	1992, 2172
BtsIMutI	CAGTG	6 cut(s)	1212, 1278, 1368, 1874, 1992, 2172
BveI	ACCTGC	2 cut(s)	1185, 1889
Cac8I	GCNNGC	2 cut(s)	426, 1890
CaiI	CAGNNNCTG	2 cut(s)	88, 136
CfoI	GCGC	1 cut(s)	655
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	8 cut(s)	667, 869, 1205, 1295, 1637, 1676, 1863, 1864
Cfr42I	CCGCGG	1 cut(s)	318
ClaI	ATCGAT	1 cut(s)	161
CseI	GACGC	2 cut(s)	1672, 1800
Csp6I	GTAC	5 cut(s)	528, 580, 903, 1320, 1713
CspCI	CAANNNNNGTGG	2 cut(s)	1545, 1580
CviQI	GTAC	5 cut(s)	528, 580, 903, 1320, 1713
DdeI	CTNAG	8 cut(s)	735, 975, 1201, 1739, 1756, 2037, 2061, 2261
DraI	TTTAAA	2 cut(s)	238, 1818
DraIII	CACNNNGTG	1 cut(s)	2104
DriI	GACNNNNNGTC	1 cut(s)	1682
EaeI	YGGCCR	1 cut(s)	1956
Eam1104I	CTCTTC	3 cut(s)	258, 752, 1031
Eam1105I	GACNNNNNGTC	1 cut(s)	1682
EarI	CTCTTC	3 cut(s)	258, 752, 1031
Ecl136II	GAGCTC	1 cut(s)	469
Eco130I	CCWWGG	2 cut(s)	1350, 1458
Eco24I	GRGCYC	3 cut(s)	471, 1609, 1867
Eco31I	GGTCTC	1 cut(s)	696
Eco32I	GATATC	1 cut(s)	1432
Eco47I	GGWCC	5 cut(s)	667, 869, 1205, 1637, 1676
Eco53kI	GAGCTC	1 cut(s)	469
Eco57I	CTGAAG	2 cut(s)	733, 1236
EcoICRI	GAGCTC	1 cut(s)	469
EcoO109I	RGGNCCY	3 cut(s)	869, 1205, 1863
EcoRI	GAATTC	1 cut(s)	2297
EcoRII	CCWGG	4 cut(s)	139, 441, 1958, 2177
EcoRV	GATATC	1 cut(s)	1432
EcoT14I	CCWWGG	2 cut(s)	1350, 1458
EcoT22I	ATGCAT	2 cut(s)	762, 957
EcoT38I	GRGCYC	3 cut(s)	471, 1609, 1867
ErhI	CCWWGG	2 cut(s)	1350, 1458
FalI	AAGNNNNNCTT	2 cut(s)	1296, 1328
FaqI	GGGAC	4 cut(s)	306, 502, 1207, 2064
FauI	CCCGC	2 cut(s)	345, 811
FauNDI	CATATG	1 cut(s)	1413
FbaI	TGATCA	2 cut(s)	211, 1405
Fnu4HI	GCNGC	6 cut(s)	128, 131, 1260, 1514, 1626, 2202
FokI	GGATG	9 cut(s)	104, 156, 299, 895, 964, 1240, 1304, 2027, 2249
FriOI	GRGCYC	3 cut(s)	471, 1609, 1867
Fsp4HI	GCNGC	6 cut(s)	128, 131, 1260, 1514, 1626, 2202
FspBI	CTAG	5 cut(s)	612, 695, 1103, 1445, 2205
GlaI	GCGC	1 cut(s)	654
GluI	GCNGC	6 cut(s)	128, 131, 1260, 1514, 1626, 2202
GsaI	CCCAGC	1 cut(s)	432
GsuI	CTGGAG	2 cut(s)	885, 1344
HaeIII	GGCC	4 cut(s)	636, 1297, 1865, 1958
HapII	CCGG	5 cut(s)	59, 284, 464, 1992, 2234
HgaI	GACGC	2 cut(s)	1672, 1800
HhaI	GCGC	1 cut(s)	655
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HincII	GTYRAC	3 cut(s)	1371, 1593, 1720
HindII	GTYRAC	3 cut(s)	1371, 1593, 1720
HindIII	AAGCTT	1 cut(s)	596
HpaII	CCGG	5 cut(s)	59, 284, 464, 1992, 2234
HphI	GGTGA	5 cut(s)	26, 188, 394, 486, 794
Hpy166II	GTNNAC	6 cut(s)	1371, 1593, 1676, 1720, 2107, 2137
Hpy188III	TCNNGA	9 cut(s)	209, 250, 284, 472, 695, 794, 1103, 1158, 1967
Hpy8I	GTNNAC	6 cut(s)	1371, 1593, 1676, 1720, 2107, 2137
Hpy99I	CGWCG	3 cut(s)	1400, 1794, 2259
HpyAV	CCTTC	4 cut(s)	223, 1211, 1802, 2067
HpyCH4III	ACNGT	6 cut(s)	98, 489, 1091, 1717, 1734, 2223
HpyCH4IV	ACGT	4 cut(s)	194, 1595, 1665, 2254
HpyF10VI	GCNNNNNNNGC	4 cut(s)	136, 2104, 2198, 2257
HpyF3I	CTNAG	8 cut(s)	735, 975, 1201, 1739, 1756, 2037, 2061, 2261
HpySE526I	ACGT	4 cut(s)	194, 1595, 1665, 2254
HspAI	GCGC	1 cut(s)	653
Kpn2I	TCCGGA	1 cut(s)	283
Ksp22I	TGATCA	2 cut(s)	211, 1405
KspI	CCGCGG	1 cut(s)	318
LguI	GCTCTTC	1 cut(s)	258
LmnI	GCTCC	8 cut(s)	157, 349, 466, 821, 886, 1363, 1478, 1923
Lsp1109I	GCAGC	6 cut(s)	139, 142, 1246, 1525, 1637, 2213
LweI	GCATC	8 cut(s)	167, 769, 942, 1174, 1500, 1612, 1761, 2085
MaeI	CTAG	5 cut(s)	612, 695, 1103, 1445, 2205
MaeII	ACGT	4 cut(s)	194, 1595, 1665, 2254
MaeIII	GTNAC	8 cut(s)	61, 190, 364, 874, 1901, 2002, 2075, 2127
MbiI	CCGCTC	1 cut(s)	352
MflI	RGATCY	2 cut(s)	445, 1008
MhlI	GDGCHC	7 cut(s)	471, 1609, 1732, 1867, 1999, 2109, 2139
MlsI	TGGCCA	1 cut(s)	1958
MluNI	TGGCCA	1 cut(s)	1958
MlyI	GAGTC	4 cut(s)	62, 622, 1366, 1433
MmeI	TCCRAC	2 cut(s)	1749, 1901
Mox20I	TGGCCA	1 cut(s)	1958
Mph1103I	ATGCAT	2 cut(s)	762, 957
MroI	TCCGGA	1 cut(s)	283
MscI	TGGCCA	1 cut(s)	1958
MseI	TTAA	7 cut(s)	44, 237, 399, 1014, 1026, 1817, 2225
MslI	CAYNNNNRTG	2 cut(s)	960, 1496
Msp20I	TGGCCA	1 cut(s)	1958
MspA1I	CMGCKG	3 cut(s)	11, 317, 428
MspCI	CTTAAG	1 cut(s)	1013
MspI	CCGG	5 cut(s)	59, 284, 464, 1992, 2234
MspR9I	CCNGG	5 cut(s)	141, 443, 1960, 2179, 2234
Mva1269I	GAATGC	1 cut(s)	713
MvaI	CCWGG	4 cut(s)	141, 443, 1960, 2179
MvnI	CGCG	2 cut(s)	317, 1794
MwoI	GCNNNNNNNGC	4 cut(s)	136, 2104, 2198, 2257
NciI	CCSGG	1 cut(s)	2234
NdeI	CATATG	1 cut(s)	1413
NlaIV	GGNNCC	4 cut(s)	417, 1864, 1865, 1996
NmuCI	GTSAC	4 cut(s)	61, 190, 364, 1901
NsiI	ATGCAT	2 cut(s)	762, 957
NspI	RCATGY	4 cut(s)	566, 1200, 1394, 2251
PciSI	GCTCTTC	1 cut(s)	258
PctI	GAATGC	1 cut(s)	713
PfeI	GAWTC	9 cut(s)	475, 587, 728, 739, 753, 1161, 1533, 1700, 1841
PflMI	CCANNNNNTGG	1 cut(s)	1351
PfoI	TCCNGGA	2 cut(s)	441, 2232
PkrI	GCNGC	6 cut(s)	129, 132, 1261, 1515, 1627, 2203
PleI	GAGTC	4 cut(s)	62, 622, 1366, 1433
PpsI	GAGTC	4 cut(s)	62, 622, 1366, 1433
Ppu21I	YACGTR	1 cut(s)	1666
PpuMI	RGGWCCY	2 cut(s)	869, 1205
PsiI	TTATAA	1 cut(s)	1650
Psp124BI	GAGCTC	1 cut(s)	471
Psp1406I	AACGTT	1 cut(s)	1595
Psp5II	RGGWCCY	2 cut(s)	869, 1205
Psp6I	CCWGG	4 cut(s)	139, 441, 1958, 2177
PspFI	CCCAGC	1 cut(s)	428
PspGI	CCWGG	4 cut(s)	139, 441, 1958, 2177
PspN4I	GGNNCC	4 cut(s)	417, 1864, 1865, 1996
PspOMI	GGGCCC	1 cut(s)	1863
PspPI	GGNCC	8 cut(s)	667, 869, 1205, 1295, 1637, 1676, 1863, 1864
PspPPI	RGGWCCY	2 cut(s)	869, 1205
PstNI	CAGNNNCTG	2 cut(s)	88, 136
PsuI	RGATCY	2 cut(s)	445, 1008
PvuII	CAGCTG	2 cut(s)	11, 428
RsaI	GTAC	5 cut(s)	529, 581, 904, 1321, 1714
RsaNI	GTAC	5 cut(s)	528, 580, 903, 1320, 1713
RseI	CAYNNNNRTG	2 cut(s)	960, 1496
SacI	GAGCTC	1 cut(s)	471
SacII	CCGCGG	1 cut(s)	318
SapI	GCTCTTC	1 cut(s)	258
SaqAI	TTAA	7 cut(s)	44, 237, 399, 1014, 1026, 1817, 2225
SatI	GCNGC	6 cut(s)	128, 131, 1260, 1514, 1626, 2202
Sau96I	GGNCC	8 cut(s)	667, 869, 1205, 1295, 1637, 1676, 1863, 1864
SchI	GAGTC	4 cut(s)	62, 622, 1366, 1433
ScrFI	CCNGG	5 cut(s)	141, 443, 1960, 2179, 2234
SduI	GDGCHC	7 cut(s)	471, 1609, 1732, 1867, 1999, 2109, 2139
SfaNI	GCATC	8 cut(s)	167, 769, 942, 1174, 1500, 1612, 1761, 2085
Sfr303I	CCGCGG	1 cut(s)	318
SgrBI	CCGCGG	1 cut(s)	318
SinI	GGWCC	5 cut(s)	667, 869, 1205, 1637, 1676
SmiMI	CAYNNNNRTG	2 cut(s)	960, 1496
SmlI	CTYRAG	5 cut(s)	248, 470, 792, 1013, 1550
SmoI	CTYRAG	5 cut(s)	248, 470, 792, 1013, 1550
SsiI	CCGC	6 cut(s)	315, 317, 352, 670, 818, 1794
SspMI	CTAG	5 cut(s)	612, 695, 1103, 1445, 2205
SstI	GAGCTC	1 cut(s)	471
StyD4I	CCNGG	5 cut(s)	139, 441, 1958, 2177, 2232
StyI	CCWWGG	2 cut(s)	1350, 1458
TaaI	ACNGT	6 cut(s)	98, 489, 1091, 1717, 1734, 2223
TaiI	ACGT	4 cut(s)	197, 1598, 1668, 2257
TaqI	TCGA	3 cut(s)	161, 1233, 1789
TatI	WGTACW	3 cut(s)	579, 1319, 1712
TfiI	GAWTC	9 cut(s)	475, 587, 728, 739, 753, 1161, 1533, 1700, 1841
Tru1I	TTAA	7 cut(s)	44, 237, 399, 1014, 1026, 1817, 2225
Tru9I	TTAA	7 cut(s)	44, 237, 399, 1014, 1026, 1817, 2225
TscAI	CASTG	6 cut(s)	1219, 1285, 1368, 1874, 1992, 2179
TseFI	GTSAC	4 cut(s)	61, 190, 364, 1901
TseI	GCWGC	6 cut(s)	127, 130, 1259, 1513, 1625, 2201
Tsp45I	GTSAC	4 cut(s)	61, 190, 364, 1901
TspDTI	ATGAA	9 cut(s)	600, 697, 1269, 1559, 2082, 2129, 2166, 2253, 2290
TspGWI	ACGGA	2 cut(s)	80, 2154
TspRI	CASTG	6 cut(s)	1219, 1285, 1368, 1874, 1992, 2179
Van91I	CCANNNNNTGG	1 cut(s)	1351
Vha464I	CTTAAG	1 cut(s)	1013
VneI	GTGCAC	2 cut(s)	2105, 2135
VpaK11BI	GGWCC	5 cut(s)	667, 869, 1205, 1637, 1676
XapI	RAATTY	8 cut(s)	239, 571, 704, 1121, 1420, 1631, 2289, 2297
XbaI	TCTAGA	2 cut(s)	694, 1102
XceI	RCATGY	4 cut(s)	566, 1200, 1394, 2251
XspI	CTAG	5 cut(s)	612, 695, 1103, 1445, 2205
Zsp2I	ATGCAT	2 cut(s)	762, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.