Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004088

Physical Location & Seq

Genomic Coordinates Forward (+)

26238876 .. 26240055

Gene Structure 1180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g26160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGTTGAGCAGATTGCTGGTGTAAATGAAGCTGCCGGACTTGTTTACTTTACTGGAACCTTAGATGGGCCTTTAGAATCGCACCTTTATTGTGCTAAGCTACTCACGGATGGAAACCAACCCTTGCAAGCTCCAGTGAGGTTGACTTGTAGCAAGGGGAAGCATGCGGTGGTGCTTGATCATCATATGAAGAACTTTGTTGATATACATGACTCCCTTGATTCTCCCCCTAAAGTTATACTGTGCTCCTTGCACGATGGAAGCTATATTATGCCTCTGTATGAGCCGTCATTAACGGTTCCAAGATTCCAAAAGCTTCAACTTGAGCCACCGGAGTTAGTTCATTTGCAGGCTAATGATGGAACAACATTGTATGCAGCTCTATACAAGCCTGACGAAACAAGATTTGGACCTCCTCCTTACAAAACTTTGATCAGCGTGTATGGTGGACCGAGCGTGCAGCTCGTCTCTGATTCTTGGATTAATACAGTTGACATGAAAGCGCAGTTTCTAAGAAGCAGAGGCATCTTAGTATGGAAGTTAGATAATAGAGGAACTGCTCGGCGTGGGCTGAAGTTCGAAGGCTCTTTAAAATACAATTGTGGTCAGGTTGATGCCGACGACCAACTGACTGGAGCCGACTGGCTTATAGAAAAAGGGTTAGCACGAGCAGGTCACATAGGATTGTATGGTTGGAGCTATGGCGGATATCTTTCAGCTATGACTCTTGCCAGGTTTCCTGATGTCTTCCGGTGTGCAGTATCCGGCGCCCCTGTTACATCGTGGGACGGGTATGACACATTCTACACCGAGAAATACATGGGACTGCCTTCTGAGAACGAGGAAGGATACGAGTCTAGCTCGGTGATGCACCATGTGCACAAGATGAAAGGAAAGTTGTTACTTGTCCATGGCATGATCGATGAAAATGTTCATTTCAGGCATACTGCCAGGCTTGTCAACGCACTTGTTGCGGCTGGAAAGACTTACGAGCTATTAATTTTTCCAGACGAACGGCACATGCCACGGCGTCATATCGATCGGATTTACATGGAAGAGAGAATCTGGGAGTTCATAGAAAGAAATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04974 map04974

Pfam Domains

Protein Families

DPPIV_N Peptidase_S9

Protein Analysis

364

Amino Acids

40.91

Weight (kDa)

6.24

Isoelectric Point (pI)

41.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPPIV_N	PF00930	2 - 77	3.5e-11	Dipeptidyl peptidase IV (DPP IV) N-terminal region
Peptidase_S15	PF02129	120 - 264	8.8e-08	X-Pro dipeptidyl-peptidase (S15 family)
Peptidase_S9	PF00326	164 - 363	6.2e-57	Prolyl oligopeptidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24260 AT5G24260 AT5G24260 AT5G24260 AT5G24260
fragaria_vesca	FvH4_7g31630 FvH4_7g31630 FvH4_7g31630 FvH4_7g31630 FvH4_7g31630 FvH4_7g31630
malus_domestica	MD07G1288900.v1.1
prunus_persica	Prupe.2G310400_v2.0.a1 Prupe.2G310400_v2.0.a1 Prupe.2G310400_v2.0.a1
pyrus_communis	pycom01g22900 pycom07g26150 pycom07g26160
rosa_chinensis	RchiOBHm_Chr1g0380701
rosa_laevigata	RLG00000026277
rosa_multiflora	Rmu_co8317175.1_g000001 Rmu_co8479769.1_g000001 Rmu_sc0001637.1_g000009
rosa_roxburghii	Rroxscaffold_4G00279100
rosa_rugosa	Rorug01G0423600 Rorug01G0423700 Rorug01G0423700
rosa_samantha	Rh1AG447900 Rh1BG403300 Rh1CG417500 Rh1DG433600
rosa_wichuraiana	Rw0G005860 Rw1G038980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	662
AccB1I	GGYRCC	1 cut(s)	767
AciI	CCGC	3 cut(s)	167, 705, 974
AcsI	RAATTY	1 cut(s)	1084
AcuI	CTGAAG	1 cut(s)	593
AcyI	GRCGYC	2 cut(s)	768, 1030
AdeI	CACNNNGTG	1 cut(s)	877
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	1 cut(s)	320
AjnI	CCWGG	2 cut(s)	731, 950
AjuI	GAANNNNNNNTTGG	2 cut(s)	390, 422
Alw21I	GWGCWC	2 cut(s)	248, 882
Alw26I	GTCTC	1 cut(s)	472
Alw44I	GTGCAC	1 cut(s)	878
AoxI	GGCC	1 cut(s)	68
ApaLI	GTGCAC	1 cut(s)	878
ApeKI	GCWGC	3 cut(s)	32, 377, 460
ApoI	RAATTY	1 cut(s)	1084
AseI	ATTAAT	2 cut(s)	483, 998
Asp700I	GAANNNNTTC	1 cut(s)	930
AspLEI	GCGC	2 cut(s)	505, 770
AspS9I	GGNCC	3 cut(s)	68, 410, 449
AsuHPI	GGTGA	1 cut(s)	877
AsuII	TTCGAA	1 cut(s)	579
AvaII	GGWCC	2 cut(s)	410, 449
BaeGI	GKGCMC	1 cut(s)	882
BanI	GGYRCC	1 cut(s)	767
BauI	CACGAG	1 cut(s)	666
BbsI	GAAGAC	1 cut(s)	739
Bbv12I	GWGCWC	2 cut(s)	248, 882
BbvI	GCAGC	3 cut(s)	19, 389, 472
BccI	CCATC	4 cut(s)	59, 104, 251, 353
BceAI	ACGGC	3 cut(s)	271, 1031, 1043
BciT130I	CCWGG	2 cut(s)	733, 952
BciVI	GTATCC	2 cut(s)	772, 842
BclI	TGATCA	2 cut(s)	178, 432
BcoDI	GTCTC	1 cut(s)	472
BfaI	CTAG	1 cut(s)	858
BfoI	RGCGCY	1 cut(s)	771
BfuAI	ACCTGC	1 cut(s)	662
BfuI	GTATCC	2 cut(s)	772, 842
BisI	GCNGC	4 cut(s)	33, 378, 461, 975
BlpI	GCTNAGC	1 cut(s)	96
BlsI	GCNGC	4 cut(s)	34, 379, 462, 976
Bme1390I	CCNGG	2 cut(s)	733, 952
Bme18I	GGWCC	2 cut(s)	410, 449
BmgT120I	GGNCC	3 cut(s)	68, 410, 449
BmiI	GGNNCC	4 cut(s)	58, 300, 637, 769
BmrFI	CCNGG	2 cut(s)	733, 952
BmsI	GCATC	3 cut(s)	534, 604, 858
BpiI	GAAGAC	1 cut(s)	739
BplI	GAGNNNNNCTC	2 cut(s)	845, 877
BpmI	CTGGAG	2 cut(s)	117, 654
Bpu1102I	GCTNAGC	1 cut(s)	96
Bpu14I	TTCGAA	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	344
Bsa29I	ATCGAT	2 cut(s)	921, 1038
BsaHI	GRCGYC	2 cut(s)	768, 1030
BsaJI	CCNNGG	2 cut(s)	910, 1025
BsaWI	WCCGGW	2 cut(s)	331, 750
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse1I	ACTGG	4 cut(s)	58, 134, 637, 647
BseBI	CCWGG	2 cut(s)	733, 952
BseCI	ATCGAT	2 cut(s)	921, 1038
BseDI	CCNNGG	2 cut(s)	910, 1025
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	825
BseNI	ACTGG	4 cut(s)	58, 134, 637, 647
BseRI	GAGGAG	1 cut(s)	405
BseSI	GKGCMC	1 cut(s)	882
BseXI	GCAGC	3 cut(s)	19, 389, 472
BsgI	GTGCAG	2 cut(s)	479, 777
Bsh1285I	CGRYCG	1 cut(s)	1042
BshFI	GGCC	1 cut(s)	70
BshNI	GGYRCC	1 cut(s)	767
BshVI	ATCGAT	2 cut(s)	921, 1038
BsiEI	CGRYCG	1 cut(s)	1042
BsiHKAI	GWGCWC	2 cut(s)	248, 882
BsiSI	CCGG	4 cut(s)	36, 332, 751, 765
BslFI	GGGAC	2 cut(s)	800, 837
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	472
BsmBI	CGTCTC	1 cut(s)	472
BsmFI	GGGAC	2 cut(s)	800, 837
BsnI	GGCC	1 cut(s)	70
Bsp119I	TTCGAA	1 cut(s)	579
Bsp1286I	GDGCHC	2 cut(s)	248, 882
Bsp143I	GATC	4 cut(s)	178, 432, 918, 1039
Bsp1720I	GCTNAGC	1 cut(s)	96
Bsp19I	CCATGG	1 cut(s)	910
BspACI	CCGC	3 cut(s)	167, 705, 974
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	1 cut(s)	826
BspDI	ATCGAT	2 cut(s)	921, 1038
BspLI	GGNNCC	4 cut(s)	58, 300, 637, 769
BspMI	ACCTGC	1 cut(s)	662
BspT104I	TTCGAA	1 cut(s)	579
BspT107I	GGYRCC	1 cut(s)	767
BsrI	ACTGG	4 cut(s)	58, 134, 637, 647
BssECI	CCNNGG	2 cut(s)	910, 1025
BssMI	GATC	4 cut(s)	178, 432, 918, 1039
BssNI	GRCGYC	2 cut(s)	768, 1030
BssSI	CACGAG	1 cut(s)	666
BssT1I	CCWWGG	1 cut(s)	910
Bst2BI	CACGAG	1 cut(s)	666
Bst2UI	CCWGG	2 cut(s)	733, 952
Bst4CI	ACNGT	3 cut(s)	243, 298, 490
Bst6I	CTCTTC	1 cut(s)	1050
BstACI	GRCGYC	2 cut(s)	768, 1030
BstAPI	GCANNNNNTGC	2 cut(s)	877, 971
BstBI	TTCGAA	1 cut(s)	579
BstC8I	GCNNGC	4 cut(s)	129, 165, 351, 458
BstDEI	CTNAG	5 cut(s)	61, 96, 512, 529, 834
BstDSI	CCRYGG	2 cut(s)	910, 1025
BstF5I	GGATG	1 cut(s)	115
BstH2I	RGCGCY	1 cut(s)	771
BstHHI	GCGC	2 cut(s)	505, 770
BstKTI	GATC	4 cut(s)	181, 435, 921, 1042
BstMAI	GTCTC	1 cut(s)	472
BstMBI	GATC	4 cut(s)	178, 432, 918, 1039
BstMCI	CGRYCG	1 cut(s)	1042
BstMWI	GCNNNNNNNGC	2 cut(s)	877, 971
BstNI	CCWGG	2 cut(s)	733, 952
BstNSI	RCATGY	2 cut(s)	167, 1024
BstSCI	CCNGG	2 cut(s)	731, 950
BstSLI	GKGCMC	1 cut(s)	882
BstV1I	GCAGC	3 cut(s)	19, 389, 472
BstV2I	GAAGAC	1 cut(s)	739
BstXI	CCANNNNNNTGG	1 cut(s)	632
Bsu15I	ATCGAT	2 cut(s)	921, 1038
BsuI	GTATCC	2 cut(s)	772, 842
BsuRI	GGCC	1 cut(s)	70
BsuTUI	ATCGAT	2 cut(s)	921, 1038
BtgI	CCRYGG	2 cut(s)	910, 1025
BtsCI	GGATG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	141
BveI	ACCTGC	1 cut(s)	662
Cac8I	GCNNGC	4 cut(s)	129, 165, 351, 458
CfoI	GCGC	2 cut(s)	505, 770
Cfr13I	GGNCC	3 cut(s)	68, 410, 449
ClaI	ATCGAT	2 cut(s)	921, 1038
CseI	GACGC	1 cut(s)	1019
CviAII	CATG	9 cut(s)	164, 209, 496, 820, 875, 911, 916, 1021, 1051
DdeI	CTNAG	5 cut(s)	61, 96, 512, 529, 834
DinI	GGCGCC	1 cut(s)	769
DpnI	GATC	4 cut(s)	180, 434, 920, 1041
DpnII	GATC	4 cut(s)	178, 432, 918, 1039
DraI	TTTAAA	1 cut(s)	591
DraIII	CACNNNGTG	1 cut(s)	877
Eam1104I	CTCTTC	1 cut(s)	1050
EarI	CTCTTC	1 cut(s)	1050
EciI	GGCGGA	1 cut(s)	720
Eco130I	CCWWGG	1 cut(s)	910
Eco32I	GATATC	1 cut(s)	710
Eco47I	GGWCC	2 cut(s)	410, 449
Eco57I	CTGAAG	1 cut(s)	593
EcoRII	CCWGG	2 cut(s)	731, 950
EcoRV	GATATC	1 cut(s)	710
EcoT14I	CCWWGG	1 cut(s)	910
EgeI	GGCGCC	1 cut(s)	769
EheI	GGCGCC	1 cut(s)	769
ErhI	CCWWGG	1 cut(s)	910
Esp3I	CGTCTC	1 cut(s)	472
FaeI	CATG	9 cut(s)	167, 212, 499, 823, 878, 914, 919, 1024, 1054
FaqI	GGGAC	2 cut(s)	800, 837
FatI	CATG	9 cut(s)	163, 208, 495, 819, 874, 910, 915, 1020, 1050
FauNDI	CATATG	1 cut(s)	186
FbaI	TGATCA	2 cut(s)	178, 432
Fnu4HI	GCNGC	4 cut(s)	33, 378, 461, 975
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	4 cut(s)	33, 378, 461, 975
FspBI	CTAG	1 cut(s)	858
GlaI	GCGC	2 cut(s)	504, 769
GluI	GCNGC	4 cut(s)	33, 378, 461, 975
GsuI	CTGGAG	2 cut(s)	117, 654
HaeII	RGCGCY	1 cut(s)	771
HaeIII	GGCC	1 cut(s)	70
HapII	CCGG	4 cut(s)	36, 332, 751, 765
HgaI	GACGC	1 cut(s)	1019
HhaI	GCGC	2 cut(s)	505, 770
Hin1I	GRCGYC	2 cut(s)	768, 1030
Hin1II	CATG	9 cut(s)	167, 212, 499, 823, 878, 914, 919, 1024, 1054
Hin6I	GCGC	2 cut(s)	503, 768
HinP1I	GCGC	2 cut(s)	503, 768
HincII	GTYRAC	3 cut(s)	144, 493, 961
HindII	GTYRAC	3 cut(s)	144, 493, 961
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	8 cut(s)	77, 212, 221, 306, 473, 724, 854, 1062
HpaII	CCGG	4 cut(s)	36, 332, 751, 765
HphI	GGTGA	1 cut(s)	877
Hpy166II	GTNNAC	6 cut(s)	46, 144, 449, 493, 880, 961
Hpy188I	TCNGA	3 cut(s)	472, 835, 1044
Hpy188III	TCNNGA	2 cut(s)	740, 1007
Hpy8I	GTNNAC	6 cut(s)	46, 144, 449, 493, 880, 961
Hpy99I	CGWCG	1 cut(s)	623
HpyAV	CCTTC	3 cut(s)	575, 839, 840
HpyCH4III	ACNGT	3 cut(s)	243, 298, 490
HpyCH4V	TGCA	8 cut(s)	127, 253, 349, 377, 460, 758, 871, 880
HpyF10VI	GCNNNNNNNGC	2 cut(s)	877, 971
HpyF3I	CTNAG	5 cut(s)	61, 96, 512, 529, 834
Hsp92I	GRCGYC	2 cut(s)	768, 1030
Hsp92II	CATG	9 cut(s)	167, 212, 499, 823, 878, 914, 919, 1024, 1054
HspAI	GCGC	2 cut(s)	503, 768
KasI	GGCGCC	1 cut(s)	767
Ksp22I	TGATCA	2 cut(s)	178, 432
Kzo9I	GATC	4 cut(s)	178, 432, 918, 1039
LmnI	GCTCC	4 cut(s)	136, 251, 635, 696
Lsp1109I	GCAGC	3 cut(s)	19, 389, 472
LweI	GCATC	3 cut(s)	534, 604, 858
MaeI	CTAG	1 cut(s)	858
MaeIII	GTNAC	3 cut(s)	674, 775, 900
MalI	GATC	4 cut(s)	180, 434, 920, 1041
MboI	GATC	4 cut(s)	178, 432, 918, 1039
MboII	GAAGA	3 cut(s)	202, 739, 1067
MfeI	CAATTG	1 cut(s)	598
MhlI	GDGCHC	2 cut(s)	248, 882
MluCI	AATT	3 cut(s)	598, 999, 1084
Mly113I	GGCGCC	1 cut(s)	768
MlyI	GAGTC	3 cut(s)	206, 718, 863
MmeI	TCCRAC	1 cut(s)	674
MnlI	CCTC	7 cut(s)	132, 285, 423, 426, 515, 545, 835
MroXI	GAANNNNTTC	1 cut(s)	930
MseI	TTAA	4 cut(s)	293, 483, 590, 998
MspI	CCGG	4 cut(s)	36, 332, 751, 765
MspR9I	CCNGG	2 cut(s)	733, 952
MunI	CAATTG	1 cut(s)	598
MvaI	CCWGG	2 cut(s)	733, 952
MwoI	GCNNNNNNNGC	2 cut(s)	877, 971
NarI	GGCGCC	1 cut(s)	768
NcoI	CCATGG	1 cut(s)	910
NdeI	CATATG	1 cut(s)	186
NdeII	GATC	4 cut(s)	178, 432, 918, 1039
NlaIII	CATG	9 cut(s)	167, 212, 499, 823, 878, 914, 919, 1024, 1054
NlaIV	GGNNCC	4 cut(s)	58, 300, 637, 769
NmeAIII	GCCGAG	1 cut(s)	541
NmuCI	GTSAC	1 cut(s)	674
NspI	RCATGY	2 cut(s)	167, 1024
NspV	TTCGAA	1 cut(s)	579
PaeI	GCATGC	1 cut(s)	167
PdmI	GAANNNNTTC	1 cut(s)	930
PfeI	GAWTC	5 cut(s)	77, 221, 306, 473, 1062
PkrI	GCNGC	4 cut(s)	34, 379, 462, 976
Ple19I	CGATCG	1 cut(s)	1042
PleI	GAGTC	3 cut(s)	206, 718, 862
PluTI	GGCGCC	1 cut(s)	771
PpsI	GAGTC	3 cut(s)	206, 718, 862
PshBI	ATTAAT	2 cut(s)	483, 998
Psp6I	CCWGG	2 cut(s)	731, 950
PspGI	CCWGG	2 cut(s)	731, 950
PspN4I	GGNNCC	4 cut(s)	58, 300, 637, 769
PspPI	GGNCC	3 cut(s)	68, 410, 449
PvuI	CGATCG	1 cut(s)	1042
SaqAI	TTAA	4 cut(s)	293, 483, 590, 998
SatI	GCNGC	4 cut(s)	33, 378, 461, 975
Sau3AI	GATC	4 cut(s)	178, 432, 918, 1039
Sau96I	GGNCC	3 cut(s)	68, 410, 449
SchI	GAGTC	3 cut(s)	206, 718, 863
ScrFI	CCNGG	2 cut(s)	733, 952
SduI	GDGCHC	2 cut(s)	248, 882
SfaNI	GCATC	3 cut(s)	534, 604, 858
SfoI	GGCGCC	1 cut(s)	769
SfuI	TTCGAA	1 cut(s)	579
SinI	GGWCC	2 cut(s)	410, 449
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SphI	GCATGC	1 cut(s)	167
Sse9I	AATT	3 cut(s)	598, 999, 1084
SsiI	CCGC	3 cut(s)	167, 705, 974
SspDI	GGCGCC	1 cut(s)	767
SspMI	CTAG	1 cut(s)	858
StyD4I	CCNGG	2 cut(s)	731, 950
StyI	CCWWGG	1 cut(s)	910
TaaI	ACNGT	3 cut(s)	243, 298, 490
TaqI	TCGA	3 cut(s)	579, 921, 1038
TaqII	GACCGA	1 cut(s)	466
TasI	AATT	3 cut(s)	598, 999, 1084
TauI	GCSGC	1 cut(s)	977
TfiI	GAWTC	5 cut(s)	77, 221, 306, 473, 1062
Tru1I	TTAA	4 cut(s)	293, 483, 590, 998
Tru9I	TTAA	4 cut(s)	293, 483, 590, 998
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	674
TseI	GCWGC	3 cut(s)	32, 377, 460
Tsp45I	GTSAC	1 cut(s)	674
TspDTI	ATGAA	8 cut(s)	42, 203, 332, 512, 902, 923, 939, 1063
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	141
VneI	GTGCAC	1 cut(s)	878
VpaK11BI	GGWCC	2 cut(s)	410, 449
VspI	ATTAAT	2 cut(s)	483, 998
XapI	RAATTY	1 cut(s)	1084
XceI	RCATGY	2 cut(s)	167, 1024
XmnI	GAANNNNTTC	1 cut(s)	930
XspI	CTAG	1 cut(s)	858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.