Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004088

Physical Location & Seq

Genomic Coordinates Reverse (-)

1982857 .. 1991699

Gene Structure 8843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00279100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3036 bp

ATGGGCTGCTATTGTTCAAAGCCAGAAAAAACTCCGGGCTATGAGGACCCTACAGTTCTTGCTGCTGAAACACTTTTTACAGTAAGTGAAGTAGAAGCCTTGTATGAGCTTTTTAAGAAATTGAGCAGTTCTATATATGATGATGGGCTTATCCACAAGGAAGAATTTCAACTAGCGCTCTTCAGGAACCAGAATAAGAGGAATCTTTTTGCAGACAGGATTTTCGACTTATTTGATATCAAGCGCAATGGGGTTATTGATTTTGGAGAATTTGTTCGATCATTGGGTGTCTTTCACCCCAGTGCACCTGTAGAAGACAAAATTGCATTTGCGTTTAGACTGTATGATCTGAGACAAACAGGGTTCATTGAACGAGAGGAGTTGAAGGAGATGGTGCTGGCACTTTTGCATGAATCAGATCTGTTACTTTCAAATGATGTCGTTGAGGCCATTGTGGATAAGACGTTTAAAGATGCAGATAAGAAAGGTGATGGAAGGATTGATCAGCAAGAGTGGAAGGAATTTGTTTTGAAGCATCCAACTTTGATCCTAAAAAATATGACTCTACCGTATCTAAAGGACATAACACTAGCTTTCCCTAGCTTTGTAATGAGTTCTGAAGTTGATGATTCAACAATAACCCATGAATTGCAGCTCAAAAAGTCACTCCTCATCCACAAGTGTGAATTGTTCAAAGCAATTGGAGTTTTATTTGTAATGCAATCAGCTGATGAGAAGAATAAGAAGAAGAAATTGAAGTTAAGTTGCGAAATGCCGGTCACGGACTCTAATTTTTCACAGAAACTGGATGACTGTGTTGTGTTTCCTATTGAGGAGATTGTGCAGCAGCCTCTGCCTGGATGTGTTGCCCCTGCATCGATTAGTTTTAGTGGTGATGATAGCATTGTGACGTATCTGTTTAGTCCTGATCAGAGTTTGAATAGGAAGGTGTTTAAATTTGACCTCAAGAGTTGTGTGGAAGAGCTCTGTTTCAGTCCTCCGGATGGTGGACTTGATGAGAGCAATATATCGGCGGAGGAGAAGTTGAGGAGGGAGAGGTTGAGGGAGCGGGGGTTGGGAGTGACAAGGTATGAGTGGGTGAAGACATGCTCGGTTAAGAAAGCAATCATGGTGCCATTGCCAGCTGGGATTTATTTCCAGGATCTTTCCTGTTCAGAACCGGAGCTCAAGATTCCAAGCACACCGTCTTCACCAATTATTGATCCCCATCTGTCCCCAGATGGTACAATGCTTGGTTATGTAAAAGACAGCGAGTTGCATGTTCTAAATTTGTTGTACAATGAATCAAAACAGCTTACATCTGGTGCTCGAGGAGATGTTTTGACTCATGGCCTTGCTGAATATATAGCTCAGGAAGAAATGGACCGCAAGAATGGATACTGGTGGTCTCTAGACAGCAAATTCATTGCGTTCACAGAAGTTGATTCCTCTGAGATTCCTCTCTTCAGAATCATGCATCAAGGTAAAAGTTCTGTTGGTTTAGAAGCTCAAGAAGATCACCCTTATCCCTTTGCGGGAGCTTCAAATGTCAAAGTTCGCCTCGGAGTAGTTTCCTCTGCTGGAGGTCCTGTTACTTGGATGGAGCTTCTCTGTGGGGGTACGGATCAACCAGACAACGAGGAGGAATATCTGGCAAGAGTAAATTGGATGCATGGAAATGTTCTAATAGCTCAGGTTTTGAACAGGTCGCACAGCAGACTAAAGATCCTTAAGTTTGACATTAAAAATGGGAAGAGAAAAGTTTTATTGGTAGAAGAACAACGCACATGGGTCAACTTGCATGATTGTTTTACACCTCTAGAGAAAGGACTAACCAAATTTTCTGGGGGATTTATCTGGGCAAGTGAGAAATCAGGATTCAAACATCTTTACCTGCATGATGCCAATGGGACATGTTTAGGTCCTATCACTGAAGGAGAATGGATGGTCGAGCAAATTGCTGGTGTAAATGAAGCTGCTGGTCTTGTTTATTTCACTGGAACTTTGGATGGGCCTTTAGAATCACACCTTTATTGTACTAAACTATTCACAGATGGAAGCCAAACCTTGGAAGCTCCAGTGAAGTTGACTCGCAACAAGGGGAGGCATGTCGTCGTGCTTGATCATCATATGAGGAATTTTGTAGATATCCATGACTCCCTAGATTTTCCTCCCAAGGTTTTACTCTGCTCCTTGCACAATGGAAGCATCATTATGCCTCTGTATAAGCAGGCATTCACAATTCCAAGATTCAAAAAGCTTCAACTTGAGCCACCAGAGTTGGTTCATTTACAGGCTAATGATGGGTCAACGTTGTATGGGGCTCTATACAAGCCTGATGCAGCAAAATTTGGACCTCCACCTTATAAAACGATGATCTACGTGTATGGTGGACCATGCGTCCAGCTTATTTCTGATTCTTGGATAAGTACAGTTGACATGAGAGCACAGTTTCTAAGAAGCAAAGGCATCTTAGTATGGAAGTTGGATAACAGAGGAACTGCTCGACGTGGACTGAAGTTTGAAGGCTCTTTAAAACACAATGCTGGTCGTGTTGATGCTGATGATCAACTGACGGGGGCCCAGTGGCTTATAGACAAAGGGTTAGCAGAAGCAGGTCACATTGGATTATATGGTTGGAGCTATGGTGGGTATCTTTCAGGGATGACTTTGGCCAGGTATCCCGATATGTTCCGATGTGCAGTGTCCGGTGCCCCTGTTACAGCATGGGATGGGTATGACACATTCTATACTGAGAAATATATGGGACTTCCTTCTGAGAATGAAGAGAGTTACGAGTATAGCTCATTGATGCACCATGTGCACAAGATGAAAGGAAAATTGTTACTCGTGCACGGAATGATTGATGAAAACGTGCATTTCAGACACACTGCCAGGCTTGTCAATGCACTTATTGCAGCTAGGAAGACTTACGAACTGTTAATTTTCCCGGATGAACGGCACATGCCACGGCGGCTTAGTGATCGGGTTTATATGGAAGAAAGAATTTGGGAATTCATAGAAAGAAACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04974 map04974

Pfam Domains

Protein Families

DPPIV_N Peptidase_S9

Protein Analysis

1011

Amino Acids

114.47

Weight (kDa)

5.89

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	105 - 175	4e-10	EF-hand domain pair
DPPIV_N	PF00930	374 - 725	3.4e-79	Dipeptidyl peptidase IV (DPP IV) N-terminal region
Peptidase_S9	PF00326	812 - 1011	2.7e-54	Prolyl oligopeptidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24260 AT5G24260 AT5G24260 AT5G24260 AT5G24260
fragaria_vesca	FvH4_7g31630 FvH4_7g31630 FvH4_7g31630 FvH4_7g31630 FvH4_7g31630 FvH4_7g31630
malus_domestica	MD07G1288900.v1.1
prunus_persica	Prupe.2G310400_v2.0.a1 Prupe.2G310400_v2.0.a1 Prupe.2G310400_v2.0.a1
pyrus_communis	pycom01g22900 pycom07g26150 pycom07g26160
rosa_chinensis	RchiOBHm_Chr1g0380701
rosa_laevigata	RLG00000026277
rosa_multiflora	Rmu_co8317175.1_g000001 Rmu_co8479769.1_g000001 Rmu_sc0001637.1_g000009
rosa_roxburghii	Rroxscaffold_4G00279100
rosa_rugosa	Rorug01G0423600 Rorug01G0423700 Rorug01G0423700
rosa_samantha	Rh1AG447900 Rh1BG403300 Rh1CG417500 Rh1DG433600
rosa_wichuraiana	Rw0G005860 Rw1G038980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2367
Acc36I	ACCTGC	2 cut(s)	1902, 2606
AccB1I	GGYRCC	2 cut(s)	1132, 2711
AccB7I	CCANNNNNTGG	1 cut(s)	2068
AccBSI	CCGCTC	1 cut(s)	1069
AccIII	TCCGGA	1 cut(s)	1000
AciI	CCGC	5 cut(s)	1034, 1069, 1387, 1535, 2974
AclI	AACGTT	1 cut(s)	2312
AclWI	GGATC	5 cut(s)	541, 1170, 1217, 1632, 1720
AcoI	YGGCCR	1 cut(s)	2673
AcuI	CTGAAG	5 cut(s)	166, 639, 1450, 1953, 2537
AdeI	CACNNNGTG	1 cut(s)	2821
AfaI	GTAC	5 cut(s)	1246, 1298, 1621, 2038, 2431
AfeI	AGCGCT	1 cut(s)	177
AfiI	CCNNNNNNNGG	5 cut(s)	857, 1004, 1007, 1535, 2068
AflII	CTTAAG	1 cut(s)	1730
AflIII	ACRYGT	2 cut(s)	1913, 2382
AhdI	GACNNNNNGTC	1 cut(s)	2399
AjiI	CACGTC	1 cut(s)	2510
AjnI	CCWGG	4 cut(s)	856, 1158, 2675, 2894
AleI	CACNNNNGTG	2 cut(s)	300, 681
AloI	GAACNNNNNNTCC	2 cut(s)	258, 290
Alw21I	GWGCWC	7 cut(s)	307, 987, 1188, 1330, 2449, 2826, 2856
Alw26I	GTCTC	2 cut(s)	346, 1413
Alw44I	GTGCAC	3 cut(s)	303, 2822, 2852
AlwI	GGATC	5 cut(s)	541, 1170, 1217, 1632, 1720
AlwNI	CAGNNNCTG	2 cut(s)	805, 853
Ama87I	CYCGRG	1 cut(s)	1329
Aor13HI	TCCGGA	1 cut(s)	1000
Aor51HI	AGCGCT	1 cut(s)	177
AoxI	GGCC	5 cut(s)	447, 1351, 2012, 2580, 2673
ApaI	GGGCCC	1 cut(s)	2584
ApaLI	GTGCAC	3 cut(s)	303, 2822, 2852
ApeKI	GCWGC	8 cut(s)	6, 62, 652, 844, 847, 1976, 2342, 2918
ArsI	GACNNNNNNTTYG	4 cut(s)	206, 238, 762, 794
Asp700I	GAANNNNTTC	2 cut(s)	165, 273
AspLEI	GCGC	2 cut(s)	178, 246
AspS9I	GGNCC	9 cut(s)	46, 1384, 1586, 1922, 2012, 2354, 2393, 2580, 2581
AsuC2I	CCSGG	2 cut(s)	36, 2951
AsuHPI	GGTGA	6 cut(s)	287, 500, 905, 1111, 1203, 1511
AvaI	CYCGRG	1 cut(s)	1329
AvaII	GGWCC	6 cut(s)	46, 1384, 1586, 1922, 2354, 2393
BaeGI	GKGCMC	5 cut(s)	307, 2584, 2716, 2826, 2856
BalI	TGGCCA	1 cut(s)	2675
BanI	GGYRCC	2 cut(s)	1132, 2711
BanII	GRGCYC	4 cut(s)	987, 1188, 2326, 2584
BauI	CACGAG	1 cut(s)	2849
BbsI	GAAGAC	4 cut(s)	321, 1109, 1200, 2933
Bbv12I	GWGCWC	7 cut(s)	307, 987, 1188, 1330, 2449, 2826, 2856
BbvI	GCAGC	7 cut(s)	49, 664, 856, 859, 1963, 2354, 2930
BceAI	ACGGC	2 cut(s)	2975, 2987
BcgI	CGANNNNNNTGC	2 cut(s)	1940, 1974
BciT130I	CCWGG	4 cut(s)	858, 1160, 2677, 2896
BciVI	GTATCC	2 cut(s)	1391, 2691
BclI	TGATCA	4 cut(s)	502, 928, 2122, 2566
BcnI	CCSGG	2 cut(s)	36, 2951
BcoDI	GTCTC	2 cut(s)	346, 1413
BfaI	CTAG	7 cut(s)	173, 590, 600, 1412, 1820, 2162, 2922
BfmI	CTRYAG	2 cut(s)	51, 309
BfoI	RGCGCY	1 cut(s)	179
BfrI	CTTAAG	1 cut(s)	1730
BfuAI	ACCTGC	2 cut(s)	1902, 2606
BfuI	GTATCC	2 cut(s)	1391, 2691
BglI	GCCNNNNNGGC	1 cut(s)	2974
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	9 cut(s)	7, 63, 653, 845, 848, 1977, 2343, 2919, 2975
BlsI	GCNGC	9 cut(s)	8, 64, 654, 846, 849, 1978, 2344, 2920, 2976
Bme1390I	CCNGG	6 cut(s)	36, 858, 1160, 2677, 2896, 2951
Bme18I	GGWCC	6 cut(s)	46, 1384, 1586, 1922, 2354, 2393
BmeRI	GACNNNNNGTC	1 cut(s)	2399
BmeT110I	CYCGRG	1 cut(s)	1329
BmgBI	CACGTC	1 cut(s)	2510
BmgT120I	GGNCC	9 cut(s)	46, 1384, 1586, 1922, 2012, 2354, 2393, 2580, 2581
BmiI	GGNNCC	6 cut(s)	48, 188, 1134, 2581, 2582, 2713
BmrFI	CCNGG	6 cut(s)	36, 858, 1160, 2677, 2896, 2951
BmrI	ACTGGG	2 cut(s)	294, 2578
BmuI	ACTGGG	2 cut(s)	294, 2578
BpiI	GAAGAC	4 cut(s)	321, 1109, 1200, 2933
BplI	GAGNNNNNCTC	2 cut(s)	2789, 2821
BpmI	CTGGAG	2 cut(s)	1602, 2061
Bpu10I	CCTNAGC	2 cut(s)	1371, 1692
BpuEI	CTTGAG	4 cut(s)	950, 1172, 1494, 2288
BpuMI	CCSGG	2 cut(s)	36, 2951
Bsa29I	ATCGAT	1 cut(s)	878
BsaAI	YACGTR	1 cut(s)	2383
BsaBI	GATNNNNATC	1 cut(s)	1227
BsaI	GGTCTC	1 cut(s)	1413
BsaJI	CCNNGG	4 cut(s)	1561, 2067, 2175, 2969
BsaWI	WCCGGW	3 cut(s)	1000, 1180, 2708
Bsc4I	CCNNNNNNNGG	5 cut(s)	857, 1004, 1007, 1535, 2068
Bse118I	RCCGGY	1 cut(s)	775
Bse1I	ACTGG	6 cut(s)	300, 810, 1406, 2002, 2078, 2584
Bse3DI	GCAATG	3 cut(s)	253, 1136, 1425
Bse8I	GATNNNNATC	1 cut(s)	1227
BseAI	TCCGGA	1 cut(s)	1000
BseBI	CCWGG	4 cut(s)	858, 1160, 2677, 2896
BseCI	ATCGAT	1 cut(s)	878
BseDI	CCNNGG	4 cut(s)	1561, 2067, 2175, 2969
BseJI	GATNNNNATC	1 cut(s)	1227
BseLI	CCNNNNNNNGG	5 cut(s)	857, 1004, 1007, 1535, 2068
BseMI	GCAATG	3 cut(s)	253, 1136, 1425
BseMII	CTCAG	6 cut(s)	341, 1385, 1443, 1706, 2745, 2769
BseNI	ACTGG	6 cut(s)	300, 810, 1406, 2002, 2078, 2584
BseRI	GAGGAG	7 cut(s)	392, 659, 848, 1052, 1063, 1347, 1655
BseSI	GKGCMC	5 cut(s)	307, 2584, 2716, 2826, 2856
BseXI	GCAGC	7 cut(s)	49, 664, 856, 859, 1963, 2354, 2930
BseYI	CCCAGC	1 cut(s)	1145
BsgI	GTGCAG	2 cut(s)	863, 2721
BshFI	GGCC	5 cut(s)	449, 1353, 2014, 2582, 2675
BshNI	GGYRCC	2 cut(s)	1132, 2711
BshVI	ATCGAT	1 cut(s)	878
BsiHKAI	GWGCWC	7 cut(s)	307, 987, 1188, 1330, 2449, 2826, 2856
BsiHKCI	CYCGRG	1 cut(s)	1329
BsiSI	CCGG	6 cut(s)	35, 776, 1001, 1181, 2709, 2951
BslFI	GGGAC	3 cut(s)	1219, 1924, 2781
BslI	CCNNNNNNNGG	5 cut(s)	857, 1004, 1007, 1535, 2068
BsmAI	GTCTC	2 cut(s)	346, 1413
BsmFI	GGGAC	3 cut(s)	1219, 1924, 2781
BsmI	GAATGC	1 cut(s)	2234
BsnI	GGCC	5 cut(s)	449, 1353, 2014, 2582, 2675
Bso31I	GGTCTC	1 cut(s)	1413
BsoBI	CYCGRG	1 cut(s)	1329
Bsp120I	GGGCCC	1 cut(s)	2580
Bsp13I	TCCGGA	1 cut(s)	1000
Bsp1407I	TGTACA	1 cut(s)	1296
BspACI	CCGC	5 cut(s)	1034, 1069, 1387, 1535, 2974
BspANI	GGCC	5 cut(s)	449, 1353, 2014, 2582, 2675
BspCNI	CTCAG	6 cut(s)	342, 1384, 1444, 1705, 2746, 2770
BspDI	ATCGAT	1 cut(s)	878
BspEI	TCCGGA	1 cut(s)	1000
BspLI	GGNNCC	6 cut(s)	48, 188, 1134, 2581, 2582, 2713
BspMI	ACCTGC	2 cut(s)	1902, 2606
BspPI	GGATC	5 cut(s)	541, 1170, 1217, 1632, 1720
BspQI	GCTCTTC	2 cut(s)	185, 975
BspT107I	GGYRCC	2 cut(s)	1132, 2711
BspTI	CTTAAG	1 cut(s)	1730
BspTNI	GGTCTC	1 cut(s)	1413
BsrBI	CCGCTC	1 cut(s)	1069
BsrDI	GCAATG	3 cut(s)	253, 1136, 1425
BsrFI	RCCGGY	1 cut(s)	775
BsrGI	TGTACA	1 cut(s)	1296
BsrI	ACTGG	6 cut(s)	300, 810, 1406, 2002, 2078, 2584
BssAI	RCCGGY	1 cut(s)	775
BssECI	CCNNGG	4 cut(s)	1561, 2067, 2175, 2969
BssSI	CACGAG	1 cut(s)	2849
BssT1I	CCWWGG	2 cut(s)	2067, 2175
Bst2BI	CACGAG	1 cut(s)	2849
Bst2UI	CCWGG	4 cut(s)	858, 1160, 2677, 2896
Bst4CI	ACNGT	9 cut(s)	55, 82, 342, 570, 815, 1206, 2434, 2451, 2940
Bst6I	CTCTTC	5 cut(s)	185, 975, 1469, 1748, 2781
BstAFI	CTTAAG	1 cut(s)	1730
BstAPI	GCANNNNNTGC	3 cut(s)	853, 2821, 2915
BstAUI	TGTACA	1 cut(s)	1296
BstBAI	YACGTR	1 cut(s)	2383
BstC8I	GCNNGC	3 cut(s)	399, 1143, 2232
BstDEI	CTNAG	9 cut(s)	350, 1371, 1452, 1692, 2456, 2473, 2754, 2778, 2978
BstDSI	CCRYGG	1 cut(s)	2969
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	2 cut(s)	178, 246
BstMAI	GTCTC	2 cut(s)	346, 1413
BstMWI	GCNNNNNNNGC	4 cut(s)	853, 2821, 2915, 2974
BstNI	CCWGG	4 cut(s)	858, 1160, 2677, 2896
BstNSI	RCATGY	5 cut(s)	1110, 1283, 1917, 2111, 2968
BstSCI	CCNGG	6 cut(s)	34, 856, 1158, 2675, 2894, 2949
BstSFI	CTRYAG	2 cut(s)	51, 309
BstSLI	GKGCMC	5 cut(s)	307, 2584, 2716, 2826, 2856
BstV1I	GCAGC	7 cut(s)	49, 664, 856, 859, 1963, 2354, 2930
BstV2I	GAAGAC	4 cut(s)	321, 1109, 1200, 2933
BstX2I	RGATCY	3 cut(s)	418, 1162, 1725
BstYI	RGATCY	3 cut(s)	418, 1162, 1725
Bsu15I	ATCGAT	1 cut(s)	878
BsuI	GTATCC	2 cut(s)	1391, 2691
BsuRI	GGCC	5 cut(s)	449, 1353, 2014, 2582, 2675
BsuTUI	ATCGAT	1 cut(s)	878
BtgI	CCRYGG	1 cut(s)	2969
BtrI	CACGTC	1 cut(s)	2510
BtsI	GCAGTG	2 cut(s)	2709, 2889
BtsIMutI	CAGTG	7 cut(s)	307, 1929, 1995, 2085, 2591, 2709, 2889
BveI	ACCTGC	2 cut(s)	1902, 2606
Cac8I	GCNNGC	3 cut(s)	399, 1143, 2232
CaiI	CAGNNNCTG	2 cut(s)	805, 853
CfoI	GCGC	2 cut(s)	178, 246
Cfr10I	RCCGGY	1 cut(s)	775
Cfr13I	GGNCC	9 cut(s)	46, 1384, 1586, 1922, 2012, 2354, 2393, 2580, 2581
ClaI	ATCGAT	1 cut(s)	878
CseI	GACGC	1 cut(s)	2389
Csp6I	GTAC	5 cut(s)	1245, 1297, 1620, 2037, 2430
CspCI	CAANNNNNGTGG	2 cut(s)	2262, 2297
CviQI	GTAC	5 cut(s)	1245, 1297, 1620, 2037, 2430
DdeI	CTNAG	9 cut(s)	350, 1371, 1452, 1692, 2456, 2473, 2754, 2778, 2978
DraI	TTTAAA	3 cut(s)	469, 955, 2535
DraIII	CACNNNGTG	1 cut(s)	2821
DriI	GACNNNNNGTC	1 cut(s)	2399
EaeI	YGGCCR	1 cut(s)	2673
Eam1104I	CTCTTC	5 cut(s)	185, 975, 1469, 1748, 2781
Eam1105I	GACNNNNNGTC	1 cut(s)	2399
EarI	CTCTTC	5 cut(s)	185, 975, 1469, 1748, 2781
EciI	GGCGGA	1 cut(s)	1049
Ecl136II	GAGCTC	2 cut(s)	985, 1186
Eco130I	CCWWGG	2 cut(s)	2067, 2175
Eco24I	GRGCYC	4 cut(s)	987, 1188, 2326, 2584
Eco31I	GGTCTC	1 cut(s)	1413
Eco32I	GATATC	2 cut(s)	238, 2149
Eco47I	GGWCC	6 cut(s)	46, 1384, 1586, 1922, 2354, 2393
Eco47III	AGCGCT	1 cut(s)	177
Eco53kI	GAGCTC	2 cut(s)	985, 1186
Eco57I	CTGAAG	5 cut(s)	166, 639, 1450, 1953, 2537
Eco88I	CYCGRG	1 cut(s)	1329
EcoICRI	GAGCTC	2 cut(s)	985, 1186
EcoO109I	RGGNCCY	4 cut(s)	46, 1586, 1922, 2580
EcoRI	GAATTC	1 cut(s)	3014
EcoRII	CCWGG	4 cut(s)	856, 1158, 2675, 2894
EcoRV	GATATC	2 cut(s)	238, 2149
EcoT14I	CCWWGG	2 cut(s)	2067, 2175
EcoT22I	ATGCAT	2 cut(s)	1479, 1674
EcoT38I	GRGCYC	4 cut(s)	987, 1188, 2326, 2584
ErhI	CCWWGG	2 cut(s)	2067, 2175
FaqI	GGGAC	3 cut(s)	1219, 1924, 2781
FauI	CCCGC	2 cut(s)	1062, 1528
FauNDI	CATATG	1 cut(s)	2130
FbaI	TGATCA	4 cut(s)	502, 928, 2122, 2566
Fnu4HI	GCNGC	9 cut(s)	7, 63, 653, 845, 848, 1977, 2343, 2919, 2975
FriOI	GRGCYC	4 cut(s)	987, 1188, 2326, 2584
Fsp4HI	GCNGC	9 cut(s)	7, 63, 653, 845, 848, 1977, 2343, 2919, 2975
FspBI	CTAG	7 cut(s)	173, 590, 600, 1412, 1820, 2162, 2922
GlaI	GCGC	2 cut(s)	177, 245
GluI	GCNGC	9 cut(s)	7, 63, 653, 845, 848, 1977, 2343, 2919, 2975
GsaI	CCCAGC	1 cut(s)	1149
GsuI	CTGGAG	2 cut(s)	1602, 2061
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	5 cut(s)	449, 1353, 2014, 2582, 2675
HapII	CCGG	6 cut(s)	35, 776, 1001, 1181, 2709, 2951
HgaI	GACGC	1 cut(s)	2389
HhaI	GCGC	2 cut(s)	178, 246
Hin6I	GCGC	2 cut(s)	176, 244
HinP1I	GCGC	2 cut(s)	176, 244
HincII	GTYRAC	4 cut(s)	1795, 2088, 2310, 2437
HindII	GTYRAC	4 cut(s)	1795, 2088, 2310, 2437
HindIII	AAGCTT	1 cut(s)	2258
HpaII	CCGG	6 cut(s)	35, 776, 1001, 1181, 2709, 2951
HphI	GGTGA	6 cut(s)	287, 500, 905, 1111, 1203, 1511
Hpy99I	CGWCG	2 cut(s)	2117, 2511
HpyAV	CCTTC	7 cut(s)	379, 489, 511, 940, 1928, 2519, 2784
HpyCH4III	ACNGT	9 cut(s)	55, 82, 342, 570, 815, 1206, 2434, 2451, 2940
HpyCH4IV	ACGT	6 cut(s)	464, 911, 2312, 2382, 2509, 2874
HpyF10VI	GCNNNNNNNGC	4 cut(s)	853, 2821, 2915, 2974
HpyF3I	CTNAG	9 cut(s)	350, 1371, 1452, 1692, 2456, 2473, 2754, 2778, 2978
HpySE526I	ACGT	6 cut(s)	464, 911, 2312, 2382, 2509, 2874
HspAI	GCGC	2 cut(s)	176, 244
Kpn2I	TCCGGA	1 cut(s)	1000
Ksp22I	TGATCA	4 cut(s)	502, 928, 2122, 2566
LguI	GCTCTTC	2 cut(s)	185, 975
LmnI	GCTCC	7 cut(s)	1066, 1183, 1538, 1603, 2080, 2195, 2640
Lsp1109I	GCAGC	7 cut(s)	49, 664, 856, 859, 1963, 2354, 2930
MaeI	CTAG	7 cut(s)	173, 590, 600, 1412, 1820, 2162, 2922
MaeII	ACGT	6 cut(s)	464, 911, 2312, 2382, 2509, 2874
MbiI	CCGCTC	1 cut(s)	1069
MfeI	CAATTG	1 cut(s)	699
MflI	RGATCY	3 cut(s)	418, 1162, 1725
MlsI	TGGCCA	1 cut(s)	2675
MluNI	TGGCCA	1 cut(s)	2675
MlyI	GAGTC	5 cut(s)	556, 779, 1339, 2083, 2150
MmeI	TCCRAC	3 cut(s)	563, 2466, 2618
Mox20I	TGGCCA	1 cut(s)	2675
Mph1103I	ATGCAT	2 cut(s)	1479, 1674
MroI	TCCGGA	1 cut(s)	1000
MroXI	GAANNNNTTC	2 cut(s)	165, 273
MscI	TGGCCA	1 cut(s)	2675
MseI	TTAA	9 cut(s)	114, 468, 761, 954, 1116, 1731, 1743, 2534, 2942
MslI	CAYNNNNRTG	4 cut(s)	300, 681, 1677, 2213
Msp20I	TGGCCA	1 cut(s)	2675
MspA1I	CMGCKG	2 cut(s)	728, 1145
MspCI	CTTAAG	1 cut(s)	1730
MspI	CCGG	6 cut(s)	35, 776, 1001, 1181, 2709, 2951
MspR9I	CCNGG	6 cut(s)	36, 858, 1160, 2677, 2896, 2951
MunI	CAATTG	1 cut(s)	699
Mva1269I	GAATGC	1 cut(s)	2234
MvaI	CCWGG	4 cut(s)	858, 1160, 2677, 2896
MwoI	GCNNNNNNNGC	4 cut(s)	853, 2821, 2915, 2974
NciI	CCSGG	2 cut(s)	36, 2951
NdeI	CATATG	1 cut(s)	2130
NlaIV	GGNNCC	6 cut(s)	48, 188, 1134, 2581, 2582, 2713
NmuCI	GTSAC	5 cut(s)	663, 778, 907, 1081, 2618
NsiI	ATGCAT	2 cut(s)	1479, 1674
NspI	RCATGY	5 cut(s)	1110, 1283, 1917, 2111, 2968
OliI	CACNNNNGTG	2 cut(s)	300, 681
PaeR7I	CTCGAG	1 cut(s)	1329
PciI	ACATGT	1 cut(s)	1913
PciSI	GCTCTTC	2 cut(s)	185, 975
PctI	GAATGC	1 cut(s)	2234
PdmI	GAANNNNTTC	2 cut(s)	165, 273
PflMI	CCANNNNNTGG	1 cut(s)	2068
PfoI	TCCNGGA	2 cut(s)	1158, 2949
PkrI	GCNGC	9 cut(s)	8, 64, 654, 846, 849, 1978, 2344, 2920, 2976
PleI	GAGTC	5 cut(s)	556, 779, 1339, 2083, 2150
PpsI	GAGTC	5 cut(s)	556, 779, 1339, 2083, 2150
Ppu21I	YACGTR	1 cut(s)	2383
PpuMI	RGGWCCY	3 cut(s)	46, 1586, 1922
PscI	ACATGT	1 cut(s)	1913
PsiI	TTATAA	1 cut(s)	2367
Psp124BI	GAGCTC	2 cut(s)	987, 1188
Psp1406I	AACGTT	1 cut(s)	2312
Psp5II	RGGWCCY	3 cut(s)	46, 1586, 1922
Psp6I	CCWGG	4 cut(s)	856, 1158, 2675, 2894
PspFI	CCCAGC	1 cut(s)	1145
PspGI	CCWGG	4 cut(s)	856, 1158, 2675, 2894
PspN4I	GGNNCC	6 cut(s)	48, 188, 1134, 2581, 2582, 2713
PspOMI	GGGCCC	1 cut(s)	2580
PspPI	GGNCC	9 cut(s)	46, 1384, 1586, 1922, 2012, 2354, 2393, 2580, 2581
PspPPI	RGGWCCY	3 cut(s)	46, 1586, 1922
PspXI	VCTCGAGB	1 cut(s)	1329
PstNI	CAGNNNCTG	2 cut(s)	805, 853
PsuI	RGATCY	3 cut(s)	418, 1162, 1725
PvuII	CAGCTG	2 cut(s)	728, 1145
RsaI	GTAC	5 cut(s)	1246, 1298, 1621, 2038, 2431
RsaNI	GTAC	5 cut(s)	1245, 1297, 1620, 2037, 2430
RseI	CAYNNNNRTG	4 cut(s)	300, 681, 1677, 2213
SacI	GAGCTC	2 cut(s)	987, 1188
SapI	GCTCTTC	2 cut(s)	185, 975
SaqAI	TTAA	9 cut(s)	114, 468, 761, 954, 1116, 1731, 1743, 2534, 2942
SatI	GCNGC	9 cut(s)	7, 63, 653, 845, 848, 1977, 2343, 2919, 2975
Sau96I	GGNCC	9 cut(s)	46, 1384, 1586, 1922, 2012, 2354, 2393, 2580, 2581
SchI	GAGTC	5 cut(s)	556, 779, 1339, 2083, 2150
ScrFI	CCNGG	6 cut(s)	36, 858, 1160, 2677, 2896, 2951
SfcI	CTRYAG	2 cut(s)	51, 309
Sfr274I	CTCGAG	1 cut(s)	1329
SinI	GGWCC	6 cut(s)	46, 1384, 1586, 1922, 2354, 2393
SlaI	CTCGAG	1 cut(s)	1329
SmiMI	CAYNNNNRTG	4 cut(s)	300, 681, 1677, 2213
SmlI	CTYRAG	6 cut(s)	965, 1187, 1329, 1509, 1730, 2267
SmoI	CTYRAG	6 cut(s)	965, 1187, 1329, 1509, 1730, 2267
SsiI	CCGC	5 cut(s)	1034, 1069, 1387, 1535, 2974
SspMI	CTAG	7 cut(s)	173, 590, 600, 1412, 1820, 2162, 2922
SstI	GAGCTC	2 cut(s)	987, 1188
StyD4I	CCNGG	6 cut(s)	34, 856, 1158, 2675, 2894, 2949
StyI	CCWWGG	2 cut(s)	2067, 2175
TaaI	ACNGT	9 cut(s)	55, 82, 342, 570, 815, 1206, 2434, 2451, 2940
TaiI	ACGT	6 cut(s)	467, 914, 2315, 2385, 2512, 2877
TaqI	TCGA	6 cut(s)	225, 277, 878, 1330, 1950, 2506
TatI	WGTACW	3 cut(s)	1296, 2036, 2429
TauI	GCSGC	1 cut(s)	2977
Tru1I	TTAA	9 cut(s)	114, 468, 761, 954, 1116, 1731, 1743, 2534, 2942
Tru9I	TTAA	9 cut(s)	114, 468, 761, 954, 1116, 1731, 1743, 2534, 2942
TscAI	CASTG	7 cut(s)	307, 1936, 2002, 2085, 2591, 2709, 2896
TseFI	GTSAC	5 cut(s)	663, 778, 907, 1081, 2618
TseI	GCWGC	8 cut(s)	6, 62, 652, 844, 847, 1976, 2342, 2918
Tsp45I	GTSAC	5 cut(s)	663, 778, 907, 1081, 2618
TspGWI	ACGGA	3 cut(s)	797, 1637, 2871
TspRI	CASTG	7 cut(s)	307, 1936, 2002, 2085, 2591, 2709, 2896
Van91I	CCANNNNNTGG	1 cut(s)	2068
Vha464I	CTTAAG	1 cut(s)	1730
VneI	GTGCAC	3 cut(s)	303, 2822, 2852
VpaK11BI	GGWCC	6 cut(s)	46, 1384, 1586, 1922, 2354, 2393
XbaI	TCTAGA	2 cut(s)	1411, 1819
XceI	RCATGY	5 cut(s)	1110, 1283, 1917, 2111, 2968
XhoI	CTCGAG	1 cut(s)	1329
XmnI	GAANNNNTTC	2 cut(s)	165, 273
XspI	CTAG	7 cut(s)	173, 590, 600, 1412, 1820, 2162, 2922
Zsp2I	ATGCAT	2 cut(s)	1479, 1674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.