Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8317175.1

Orthogroup ID

OG0004088

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 839

Gene Structure 839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8317175.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgcaatcagctgatgagaacaataagaagaagaaattgaagttaagttgcgaaatgccggccacggacgctaatttttcacagaaactggatgactgtattgtgtttcctattgaggagattgtgcagcagcctctgcctggatgtgttgctcctgcatcgattagttttagcggtgatgatagcattgtgacgtatctgtttagtcctgatcagagtttgaataggaaggtgtttaaatttgacctcaagagttgtgtggaagagctgtgtttcagtcctccggatggggggcttgatgagagcaatatatcggcggaggagaagttgaggagggagaggttgagggagcgggggttgggagtgacaaggtatgagtgggtgaagacaagctcggttaagaaagcaatcatggtgccattgccagctgggatttatttccaggatctttcctgttcagaaccggagctcaagattccaagcacaccgtcttcaccaattattgatccccatctgtccccagatggtacaatgcttggttatgtaaaagacagcgagttgcatgttctaaatttgttgtacaatgaatcaaaacagcttacatctggtgcgagaggaggtgttttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04974 map04974

Pfam Domains

Protein Families

DPPIV_N Peptidase_S9

Protein Analysis

209

Amino Acids

23.1

Weight (kDa)

5.08

Isoelectric Point (pI)

56.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24260 AT5G24260 AT5G24260 AT5G24260 AT5G24260
fragaria_vesca	FvH4_7g31630 FvH4_7g31630 FvH4_7g31630 FvH4_7g31630 FvH4_7g31630 FvH4_7g31630
malus_domestica	MD07G1288900.v1.1
prunus_persica	Prupe.2G310400_v2.0.a1 Prupe.2G310400_v2.0.a1 Prupe.2G310400_v2.0.a1
pyrus_communis	pycom01g22900 pycom07g26150 pycom07g26160
rosa_chinensis	RchiOBHm_Chr1g0380701
rosa_laevigata	RLG00000026277
rosa_multiflora	Rmu_co8317175.1_g000001 Rmu_co8479769.1_g000001 Rmu_sc0001637.1_g000009
rosa_roxburghii	Rroxscaffold_4G00279100
rosa_rugosa	Rorug01G0423600 Rorug01G0423700 Rorug01G0423700
rosa_samantha	Rh1AG447900 Rh1BG403300 Rh1CG417500 Rh1DG433600
rosa_wichuraiana	Rw0G005860 Rw1G038980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	415
AccBSI	CCGCTC	1 cut(s)	352
AccIII	TCCGGA	1 cut(s)	283
AciI	CCGC	3 cut(s)	174, 317, 352
AclWI	GGATC	2 cut(s)	453, 500
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	2 cut(s)	239, 571
AfaI	GTAC	2 cut(s)	529, 581
AfiI	CCNNNNNNNGG	3 cut(s)	140, 287, 290
AgsI	TTSAA	2 cut(s)	40, 223
AjnI	CCWGG	2 cut(s)	139, 441
AluBI	AGCT	6 cut(s)	11, 268, 393, 428, 469, 598
AluI	AGCT	6 cut(s)	11, 268, 393, 428, 469, 598
Alw21I	GWGCWC	1 cut(s)	471
AlwI	GGATC	2 cut(s)	453, 500
AlwNI	CAGNNNCTG	2 cut(s)	88, 136
Aor13HI	TCCGGA	1 cut(s)	283
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	2 cut(s)	127, 130
ApoI	RAATTY	2 cut(s)	239, 571
AsuHPI	GGTGA	3 cut(s)	188, 394, 486
BanI	GGYRCC	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	471
BbsI	GAAGAC	2 cut(s)	392, 483
Bbv12I	GWGCWC	1 cut(s)	471
BbvI	GCAGC	2 cut(s)	139, 142
BccI	CCATC	3 cut(s)	281, 518, 519
BciT130I	CCWGG	2 cut(s)	141, 443
BclI	TGATCA	1 cut(s)	211
BisI	GCNGC	2 cut(s)	128, 131
BlsI	GCNGC	2 cut(s)	129, 132
Bme1390I	CCNGG	2 cut(s)	141, 443
BmiI	GGNNCC	1 cut(s)	417
BmrFI	CCNGG	2 cut(s)	141, 443
BmsI	GCATC	1 cut(s)	167
BpiI	GAAGAC	2 cut(s)	392, 483
BpuEI	CTTGAG	2 cut(s)	233, 455
Bsa29I	ATCGAT	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	510
BsaJI	CCNNGG	1 cut(s)	63
BsaWI	WCCGGW	2 cut(s)	283, 463
BsaXI	ACNNNNNCTCC	4 cut(s)	311, 341, 341, 371
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 287, 290
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	419
Bse8I	GATNNNNATC	1 cut(s)	510
BseAI	TCCGGA	1 cut(s)	283
BseBI	CCWGG	2 cut(s)	141, 443
BseCI	ATCGAT	1 cut(s)	161
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	3 cut(s)	97, 149, 292
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	3 cut(s)	140, 287, 290
BseMI	GCAATG	1 cut(s)	419
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	3 cut(s)	131, 335, 346
BseXI	GCAGC	2 cut(s)	139, 142
BseYI	CCCAGC	1 cut(s)	428
BsgI	GTGCAG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	62
BshNI	GGYRCC	1 cut(s)	415
BshVI	ATCGAT	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	471
BsiSI	CCGG	3 cut(s)	59, 284, 464
BslFI	GGGAC	1 cut(s)	502
BslI	CCNNNNNNNGG	3 cut(s)	140, 287, 290
BsmFI	GGGAC	1 cut(s)	502
BsnI	GGCC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp13I	TCCGGA	1 cut(s)	283
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	3 cut(s)	211, 445, 505
BspACI	CCGC	3 cut(s)	174, 317, 352
BspANI	GGCC	1 cut(s)	62
BspDI	ATCGAT	1 cut(s)	161
BspEI	TCCGGA	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	417
BspPI	GGATC	2 cut(s)	453, 500
BspQI	GCTCTTC	1 cut(s)	258
BspT107I	GGYRCC	1 cut(s)	415
BsrBI	CCGCTC	1 cut(s)	352
BsrDI	GCAATG	1 cut(s)	419
BsrFI	RCCGGY	1 cut(s)	58
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	3 cut(s)	211, 445, 505
Bst2UI	CCWGG	2 cut(s)	141, 443
Bst4CI	ACNGT	2 cut(s)	98, 489
Bst6I	CTCTTC	1 cut(s)	258
BstAPI	GCANNNNNTGC	1 cut(s)	136
BstAUI	TGTACA	1 cut(s)	579
BstC8I	GCNNGC	2 cut(s)	60, 426
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	3 cut(s)	97, 149, 292
BstKTI	GATC	3 cut(s)	214, 448, 508
BstMBI	GATC	3 cut(s)	211, 445, 505
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 136
BstNI	CCWGG	2 cut(s)	141, 443
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	2 cut(s)	139, 441
BstV1I	GCAGC	2 cut(s)	139, 142
BstV2I	GAAGAC	2 cut(s)	392, 483
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
Bsu15I	ATCGAT	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	62
BsuTUI	ATCGAT	1 cut(s)	161
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	3 cut(s)	97, 149, 292
Cac8I	GCNNGC	2 cut(s)	60, 426
CaiI	CAGNNNCTG	2 cut(s)	88, 136
Cfr10I	RCCGGY	1 cut(s)	58
ClaI	ATCGAT	1 cut(s)	161
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	2 cut(s)	528, 580
CviAII	CATG	2 cut(s)	412, 563
CviJI	RGCY	9 cut(s)	11, 62, 133, 268, 295, 393, 428, 469, 598
CviKI_1	RGCY	9 cut(s)	11, 62, 133, 268, 295, 393, 428, 469, 598
CviQI	GTAC	2 cut(s)	528, 580
DpnI	GATC	3 cut(s)	213, 447, 507
DpnII	GATC	3 cut(s)	211, 445, 505
DraI	TTTAAA	1 cut(s)	238
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
EciI	GGCGGA	1 cut(s)	332
Ecl136II	GAGCTC	1 cut(s)	469
Eco24I	GRGCYC	1 cut(s)	471
Eco53kI	GAGCTC	1 cut(s)	469
EcoICRI	GAGCTC	1 cut(s)	469
EcoRII	CCWGG	2 cut(s)	139, 441
EcoT38I	GRGCYC	1 cut(s)	471
FaeI	CATG	2 cut(s)	415, 566
FaiI	YATR	5 cut(s)	311, 375, 413, 543, 564
FaqI	GGGAC	1 cut(s)	502
FatI	CATG	2 cut(s)	411, 562
FauI	CCCGC	1 cut(s)	345
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	128, 131
FokI	GGATG	3 cut(s)	104, 156, 299
FriOI	GRGCYC	1 cut(s)	471
Fsp4HI	GCNGC	2 cut(s)	128, 131
GluI	GCNGC	2 cut(s)	128, 131
GsaI	CCCAGC	1 cut(s)	432
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	3 cut(s)	59, 284, 464
HgaI	GACGC	1 cut(s)	77
Hin1II	CATG	2 cut(s)	415, 566
HinfI	GANTC	2 cut(s)	475, 587
HpaII	CCGG	3 cut(s)	59, 284, 464
HphI	GGTGA	3 cut(s)	188, 394, 486
Hpy188I	TCNGA	2 cut(s)	216, 460
Hpy188III	TCNNGA	4 cut(s)	209, 250, 284, 472
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	2 cut(s)	98, 489
HpyCH4IV	ACGT	1 cut(s)	194
HpyCH4V	TGCA	4 cut(s)	4, 127, 158, 562
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 136
HpySE526I	ACGT	1 cut(s)	194
Hsp92II	CATG	2 cut(s)	415, 566
Kpn2I	TCCGGA	1 cut(s)	283
KroI	GCCGGC	1 cut(s)	58
KroNI	GCCGGC	1 cut(s)	60
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	211, 445, 505
LguI	GCTCTTC	1 cut(s)	258
LmnI	GCTCC	3 cut(s)	157, 349, 466
Lsp1109I	GCAGC	2 cut(s)	139, 142
LweI	GCATC	1 cut(s)	167
MaeII	ACGT	1 cut(s)	194
MaeIII	GTNAC	2 cut(s)	190, 364
MalI	GATC	3 cut(s)	213, 447, 507
MbiI	CCGCTC	1 cut(s)	352
MboI	GATC	3 cut(s)	211, 445, 505
MboII	GAAGA	5 cut(s)	40, 43, 275, 397, 483
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	1 cut(s)	471
MluCI	AATT	5 cut(s)	35, 73, 239, 498, 571
MroI	TCCGGA	1 cut(s)	283
MroNI	GCCGGC	1 cut(s)	58
MseI	TTAA	3 cut(s)	44, 237, 399
MspA1I	CMGCKG	2 cut(s)	11, 428
MspI	CCGG	3 cut(s)	59, 284, 464
MspR9I	CCNGG	2 cut(s)	141, 443
MvaI	CCWGG	2 cut(s)	141, 443
MwoI	GCNNNNNNNGC	2 cut(s)	68, 136
NaeI	GCCGGC	1 cut(s)	60
NdeII	GATC	3 cut(s)	211, 445, 505
NgoMIV	GCCGGC	1 cut(s)	58
NlaIII	CATG	2 cut(s)	415, 566
NlaIV	GGNNCC	1 cut(s)	417
NmuCI	GTSAC	2 cut(s)	190, 364
NspI	RCATGY	1 cut(s)	566
PciSI	GCTCTTC	1 cut(s)	258
PdiI	GCCGGC	1 cut(s)	60
PfeI	GAWTC	2 cut(s)	475, 587
PfoI	TCCNGGA	1 cut(s)	441
PkrI	GCNGC	2 cut(s)	129, 132
Psp124BI	GAGCTC	1 cut(s)	471
Psp6I	CCWGG	2 cut(s)	139, 441
PspFI	CCCAGC	1 cut(s)	428
PspGI	CCWGG	2 cut(s)	139, 441
PspN4I	GGNNCC	1 cut(s)	417
PstNI	CAGNNNCTG	2 cut(s)	88, 136
PsuI	RGATCY	1 cut(s)	445
PvuII	CAGCTG	2 cut(s)	11, 428
RsaI	GTAC	2 cut(s)	529, 581
RsaNI	GTAC	2 cut(s)	528, 580
SacI	GAGCTC	1 cut(s)	471
SapI	GCTCTTC	1 cut(s)	258
SaqAI	TTAA	3 cut(s)	44, 237, 399
SatI	GCNGC	2 cut(s)	128, 131
Sau3AI	GATC	3 cut(s)	211, 445, 505
ScrFI	CCNGG	2 cut(s)	141, 443
SduI	GDGCHC	1 cut(s)	471
SfaNI	GCATC	1 cut(s)	167
SmlI	CTYRAG	2 cut(s)	248, 470
SmoI	CTYRAG	2 cut(s)	248, 470
Sse9I	AATT	5 cut(s)	35, 73, 239, 498, 571
SsiI	CCGC	3 cut(s)	174, 317, 352
SstI	GAGCTC	1 cut(s)	471
StyD4I	CCNGG	2 cut(s)	139, 441
TaaI	ACNGT	2 cut(s)	98, 489
TaiI	ACGT	1 cut(s)	197
TaqI	TCGA	1 cut(s)	161
TasI	AATT	5 cut(s)	35, 73, 239, 498, 571
TatI	WGTACW	1 cut(s)	579
TfiI	GAWTC	2 cut(s)	475, 587
Tru1I	TTAA	3 cut(s)	44, 237, 399
Tru9I	TTAA	3 cut(s)	44, 237, 399
TseFI	GTSAC	2 cut(s)	190, 364
TseI	GCWGC	2 cut(s)	127, 130
Tsp45I	GTSAC	2 cut(s)	190, 364
TspDTI	ATGAA	1 cut(s)	600
TspGWI	ACGGA	1 cut(s)	80
XapI	RAATTY	2 cut(s)	239, 571
XceI	RCATGY	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.