Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0014029

Physical Location & Seq

Genomic Coordinates Forward (+)

26876295 .. 26878380

Gene Structure 2086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGTCTGGATCTTCGAACTTGATGAATTAAAAAGAAGAGATCGGGAAAGGATCCATTTCCTAGATGGATCCTTCCAGACGGACCAAGAAAAATGTAAAATTTACAAGTGTTCGGTCCATAACTCTCTCCCTCACTCTCCCTCTCTCTCTCTAACATTCAAGACCCTTCTCCAAGCTTTCTTCCCGCAATCCCGTTACCTCTATATATGCACAAAGATAACTCCCCACCTCACCAAGAAATCTGAAAGTTGTGCTTACCCACAAAAGAGAAGCTTGCTAACTGTCTGTGTTACTATTAGTTACATGGCTTCAACATTGGCTTTGTCTTCTTCGTCACCTTTGCTTTCAAACAAAGCAAGGTCTTCAATCACAGCAAACGCCAGTCTGCCATCCTCGGCCGCCTTTCCGTTGCGGCGGAATAGGCTGCCGGTGGTGAGAGCTCAGGCCGGTGGAGACGGCAAGTTGGACGTGCAAGTCAATCAGGGCAACCAAGGGACTGATGTGGAGAGGAGGCCAAGGAGGTTGGCTGTGGACATTTCTCCTTTTGGTATTGCAGGTCTATTAGATCCCATCTCCCCAGTGAGAACAATGCGGCAAATGCTGGACACAGTCGACCGGCTTTTCGAAGACACGGTGGCATTCCCGGGAAGAAACAGAGCAGCAGGGGAAGTGCGCGCGCCTTGGGACATCAAAGACGACGAACACGAAATCAAAATGCGGTTCGACATGCCGGGGCTTTCGAAGGAGGACGTGAAGGTGTCGGTCGAGGACGATGTGCTAGTTATAAAGGGAGAGCAGAAGAAGGAAGAAGGCGGCGACGATTCGTGGTCGAGCAGGAGCTTTAGCTCCTACAATACCCGCCTTCAGTTGCCGGATAATTCGGAGAAGGACAAGATCAAGGCGGAGTTCAAGAATGGTGTTCTCTACATAGCCATTCCTAAGACCAAAGTTGAACGCAAGGTTATTGACGTTGCAATTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0009266 GO:0009295 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0101031 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

328

Amino Acids

36.85

Weight (kDa)

9.16

Isoelectric Point (pI)

52.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	229 - 327	4.8e-29	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27670
fragaria_vesca	FvH4_6g02120 FvH4_7g32800
malus_domestica	MD01G1227600.v1.1 MD07G1298000.v1.1
prunus_persica	Prupe.2G317700_v2.0.a1
pyrus_communis	pycom07g27040
rosa_chinensis	RchiOBHm_Chr1g0382761
rosa_laevigata	RLG00000026163
rosa_multiflora	Rmu_co8395491.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277930
rosa_rugosa	Rorug01G0435600
rosa_samantha	Rh1AG460800 Rh1BG417600 Rh1CG431200 Rh1DG449800
rosa_wichuraiana	Rw1G041080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	785
AasI	GACNNNNNNGTC	1 cut(s)	473
Acc36I	ACCTGC	1 cut(s)	545
AccI	GTMKAC	1 cut(s)	612
AccII	CGCG	2 cut(s)	675, 677
AciI	CCGC	9 cut(s)	185, 399, 412, 415, 592, 718, 813, 859, 902
AclWI	GGATC	6 cut(s)	17, 46, 59, 63, 76, 560
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	1 cut(s)	99
AcuI	CTGAAG	1 cut(s)	848
AgsI	TTSAA	6 cut(s)	160, 312, 348, 366, 910, 953
AjiI	CACGTC	2 cut(s)	469, 751
AluBI	AGCT	5 cut(s)	176, 273, 440, 840, 846
AluI	AGCT	5 cut(s)	176, 273, 440, 840, 846
Alw21I	GWGCWC	1 cut(s)	442
Alw26I	GTCTC	1 cut(s)	447
AlwI	GGATC	6 cut(s)	17, 46, 59, 63, 76, 560
Ama87I	CYCGRG	1 cut(s)	643
AoxI	GGCC	3 cut(s)	396, 444, 512
ApeKI	GCWGC	2 cut(s)	424, 659
ApoI	RAATTY	1 cut(s)	99
ArsI	GACNNNNNNTTYG	2 cut(s)	605, 637
AspLEI	GCGC	3 cut(s)	675, 677, 679
AspS9I	GGNCC	2 cut(s)	82, 115
AsuC2I	CCSGG	3 cut(s)	644, 645, 732
AsuHPI	GGTGA	3 cut(s)	223, 327, 445
AsuII	TTCGAA	3 cut(s)	15, 624, 740
AvaI	CYCGRG	1 cut(s)	643
AvaII	GGWCC	2 cut(s)	82, 115
BamHI	GGATCC	2 cut(s)	51, 68
BanII	GRGCYC	1 cut(s)	442
BbsI	GAAGAC	3 cut(s)	318, 354, 633
Bbv12I	GWGCWC	1 cut(s)	442
BbvI	GCAGC	2 cut(s)	411, 671
BccI	CCATC	3 cut(s)	59, 397, 578
BceAI	ACGGC	1 cut(s)	472
BcnI	CCSGG	3 cut(s)	644, 645, 732
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	2 cut(s)	62, 779
BfuAI	ACCTGC	1 cut(s)	545
BisI	GCNGC	6 cut(s)	399, 413, 425, 593, 660, 814
BlsI	GCNGC	6 cut(s)	400, 414, 426, 594, 661, 815
Bme1390I	CCNGG	3 cut(s)	644, 645, 732
Bme18I	GGWCC	2 cut(s)	82, 115
BmeT110I	CYCGRG	1 cut(s)	643
BmgBI	CACGTC	2 cut(s)	469, 751
BmgT120I	GGNCC	2 cut(s)	82, 115
BmiI	GGNNCC	2 cut(s)	53, 70
BmrFI	CCNGG	3 cut(s)	644, 645, 732
BmrI	ACTGGG	1 cut(s)	572
BmuI	ACTGGG	1 cut(s)	572
BpiI	GAAGAC	3 cut(s)	318, 354, 633
Bpu10I	CCTNAGC	1 cut(s)	441
Bpu14I	TTCGAA	3 cut(s)	15, 624, 740
BpuMI	CCSGG	3 cut(s)	644, 645, 732
BsaJI	CCNNGG	6 cut(s)	393, 490, 515, 643, 680, 731
Bse118I	RCCGGY	3 cut(s)	427, 446, 615
Bse1I	ACTGG	2 cut(s)	381, 578
BseDI	CCNNGG	6 cut(s)	393, 490, 515, 643, 680, 731
BseGI	GGATG	1 cut(s)	389
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	2 cut(s)	381, 578
BsePI	GCGCGC	2 cut(s)	673, 675
BseRI	GAGGAG	1 cut(s)	523
BseX3I	CGGCCG	1 cut(s)	396
BseXI	GCAGC	2 cut(s)	411, 671
Bsh1236I	CGCG	2 cut(s)	675, 677
Bsh1285I	CGRYCG	3 cut(s)	399, 616, 765
BshFI	GGCC	3 cut(s)	398, 446, 514
BsiEI	CGRYCG	3 cut(s)	399, 616, 765
BsiHKAI	GWGCWC	1 cut(s)	442
BsiHKCI	CYCGRG	1 cut(s)	643
BsiSI	CCGG	6 cut(s)	428, 447, 616, 644, 731, 872
BslFI	GGGAC	2 cut(s)	508, 698
BsmAI	GTCTC	1 cut(s)	447
BsmBI	CGTCTC	1 cut(s)	447
BsmFI	GGGAC	2 cut(s)	508, 698
BsmI	GAATGC	1 cut(s)	638
BsnI	GGCC	3 cut(s)	398, 446, 514
BsoBI	CYCGRG	1 cut(s)	643
Bsp119I	TTCGAA	3 cut(s)	15, 624, 740
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp143I	GATC	6 cut(s)	9, 40, 51, 68, 565, 894
BspACI	CCGC	9 cut(s)	185, 399, 412, 415, 592, 718, 813, 859, 902
BspANI	GGCC	3 cut(s)	398, 446, 514
BspCNI	CTCAG	1 cut(s)	454
BspFNI	CGCG	2 cut(s)	675, 677
BspLI	GGNNCC	2 cut(s)	53, 70
BspMI	ACCTGC	1 cut(s)	545
BspPI	GGATC	6 cut(s)	17, 46, 59, 63, 76, 560
BspT104I	TTCGAA	3 cut(s)	15, 624, 740
BsrFI	RCCGGY	3 cut(s)	427, 446, 615
BsrI	ACTGG	2 cut(s)	381, 578
BssAI	RCCGGY	3 cut(s)	427, 446, 615
BssECI	CCNNGG	6 cut(s)	393, 490, 515, 643, 680, 731
BssHII	GCGCGC	2 cut(s)	673, 675
BssMI	GATC	6 cut(s)	9, 40, 51, 68, 565, 894
BssT1I	CCWWGG	3 cut(s)	490, 515, 680
Bst4CI	ACNGT	3 cut(s)	283, 610, 634
Bst6I	CTCTTC	1 cut(s)	31
BstBI	TTCGAA	3 cut(s)	15, 624, 740
BstC8I	GCNNGC	3 cut(s)	275, 675, 677
BstDEI	CTNAG	2 cut(s)	441, 939
BstF5I	GGATG	1 cut(s)	389
BstFNI	CGCG	2 cut(s)	675, 677
BstHHI	GCGC	3 cut(s)	675, 677, 679
BstKTI	GATC	6 cut(s)	12, 43, 54, 71, 568, 897
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	6 cut(s)	9, 40, 51, 68, 565, 894
BstMCI	CGRYCG	3 cut(s)	399, 616, 765
BstMWI	GCNNNNNNNGC	2 cut(s)	421, 598
BstNSI	RCATGY	1 cut(s)	730
BstSCI	CCNGG	3 cut(s)	642, 643, 730
BstUI	CGCG	2 cut(s)	675, 677
BstV1I	GCAGC	2 cut(s)	411, 671
BstV2I	GAAGAC	3 cut(s)	318, 354, 633
BstX2I	RGATCY	4 cut(s)	9, 51, 68, 565
BstYI	RGATCY	4 cut(s)	9, 51, 68, 565
BstZI	CGGCCG	1 cut(s)	396
BsuRI	GGCC	3 cut(s)	398, 446, 514
BtrI	CACGTC	2 cut(s)	469, 751
BtsCI	GGATG	1 cut(s)	389
BtsIMutI	CAGTG	1 cut(s)	585
BveI	ACCTGC	1 cut(s)	545
Cac8I	GCNNGC	3 cut(s)	275, 675, 677
CfoI	GCGC	3 cut(s)	675, 677, 679
Cfr10I	RCCGGY	3 cut(s)	427, 446, 615
Cfr13I	GGNCC	2 cut(s)	82, 115
Cfr9I	CCCGGG	1 cut(s)	643
CviAII	CATG	2 cut(s)	304, 727
DdeI	CTNAG	2 cut(s)	441, 939
DpnI	GATC	6 cut(s)	11, 42, 53, 70, 567, 896
DpnII	GATC	6 cut(s)	9, 40, 51, 68, 565, 894
DrdI	GACNNNNNNGTC	1 cut(s)	473
DseDI	GACNNNNNNGTC	1 cut(s)	473
EaeI	YGGCCR	1 cut(s)	396
EagI	CGGCCG	1 cut(s)	396
Eam1104I	CTCTTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	31
EciI	GGCGGA	2 cut(s)	430, 917
Ecl136II	GAGCTC	1 cut(s)	440
EclXI	CGGCCG	1 cut(s)	396
Eco130I	CCWWGG	3 cut(s)	490, 515, 680
Eco24I	GRGCYC	1 cut(s)	442
Eco47I	GGWCC	2 cut(s)	82, 115
Eco52I	CGGCCG	1 cut(s)	396
Eco53kI	GAGCTC	1 cut(s)	440
Eco57I	CTGAAG	1 cut(s)	848
Eco88I	CYCGRG	1 cut(s)	643
EcoICRI	GAGCTC	1 cut(s)	440
EcoT14I	CCWWGG	3 cut(s)	490, 515, 680
EcoT38I	GRGCYC	1 cut(s)	442
ErhI	CCWWGG	3 cut(s)	490, 515, 680
Esp3I	CGTCTC	1 cut(s)	447
FaeI	CATG	2 cut(s)	307, 730
FaiI	YATR	8 cut(s)	120, 204, 206, 208, 305, 728, 785, 929
FalI	AAGNNNNNCTT	4 cut(s)	238, 270, 257, 289
FaqI	GGGAC	2 cut(s)	508, 698
FatI	CATG	2 cut(s)	303, 726
FauI	CCCGC	2 cut(s)	192, 866
FblI	GTMKAC	1 cut(s)	612
Fnu4HI	GCNGC	6 cut(s)	399, 413, 425, 593, 660, 814
FokI	GGATG	1 cut(s)	376
FriOI	GRGCYC	1 cut(s)	442
Fsp4HI	GCNGC	6 cut(s)	399, 413, 425, 593, 660, 814
FspBI	CTAG	2 cut(s)	62, 779
GlaI	GCGC	3 cut(s)	674, 676, 678
GluI	GCNGC	6 cut(s)	399, 413, 425, 593, 660, 814
HaeIII	GGCC	3 cut(s)	398, 446, 514
HapII	CCGG	6 cut(s)	428, 447, 616, 644, 731, 872
HhaI	GCGC	3 cut(s)	675, 677, 679
Hin1II	CATG	2 cut(s)	307, 730
Hin6I	GCGC	3 cut(s)	673, 675, 677
HinP1I	GCGC	3 cut(s)	673, 675, 677
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HindIII	AAGCTT	2 cut(s)	174, 271
HinfI	GANTC	1 cut(s)	821
HpaII	CCGG	6 cut(s)	428, 447, 616, 644, 731, 872
HphI	GGTGA	3 cut(s)	223, 327, 445
Hpy166II	GTNNAC	2 cut(s)	532, 613
Hpy188I	TCNGA	2 cut(s)	244, 883
Hpy188III	TCNNGA	5 cut(s)	7, 44, 76, 160, 910
Hpy8I	GTNNAC	2 cut(s)	532, 613
Hpy99I	CGWCG	2 cut(s)	701, 821
HpyAV	CCTTC	8 cut(s)	82, 176, 736, 748, 796, 803, 872, 880
HpyCH4III	ACNGT	3 cut(s)	283, 610, 634
HpyCH4IV	ACGT	3 cut(s)	468, 750, 969
HpyCH4V	TGCA	4 cut(s)	210, 472, 554, 974
HpyF10VI	GCNNNNNNNGC	2 cut(s)	421, 598
HpyF3I	CTNAG	2 cut(s)	441, 939
HpySE526I	ACGT	3 cut(s)	468, 750, 969
Hsp92II	CATG	2 cut(s)	307, 730
HspAI	GCGC	3 cut(s)	673, 675, 677
Kzo9I	GATC	6 cut(s)	9, 40, 51, 68, 565, 894
LmnI	GCTCC	2 cut(s)	837, 851
Lsp1109I	GCAGC	2 cut(s)	411, 671
MaeI	CTAG	2 cut(s)	62, 779
MaeII	ACGT	3 cut(s)	468, 750, 969
MaeIII	GTNAC	4 cut(s)	194, 289, 299, 333
MalI	GATC	6 cut(s)	11, 42, 53, 70, 567, 896
MboI	GATC	6 cut(s)	9, 40, 51, 68, 565, 894
MflI	RGATCY	4 cut(s)	9, 51, 68, 565
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	4 cut(s)	26, 99, 877, 975
MmeI	TCCRAC	1 cut(s)	444
MseI	TTAA	1 cut(s)	29
MspI	CCGG	6 cut(s)	428, 447, 616, 644, 731, 872
MspR9I	CCNGG	3 cut(s)	644, 645, 732
Mva1269I	GAATGC	1 cut(s)	638
MvnI	CGCG	2 cut(s)	675, 677
MwoI	GCNNNNNNNGC	2 cut(s)	421, 598
NciI	CCSGG	3 cut(s)	644, 645, 732
NdeII	GATC	6 cut(s)	9, 40, 51, 68, 565, 894
NlaIII	CATG	2 cut(s)	307, 730
NlaIV	GGNNCC	2 cut(s)	53, 70
NmeAIII	GCCGAG	1 cut(s)	374
NmuCI	GTSAC	1 cut(s)	333
NspI	RCATGY	1 cut(s)	730
NspV	TTCGAA	3 cut(s)	15, 624, 740
PauI	GCGCGC	2 cut(s)	673, 675
PcsI	WCGNNNNNNNCGW	1 cut(s)	702
PctI	GAATGC	1 cut(s)	638
PfeI	GAWTC	1 cut(s)	821
PflFI	GACNNNGTC	1 cut(s)	608
PkrI	GCNGC	6 cut(s)	400, 414, 426, 594, 661, 815
PsiI	TTATAA	1 cut(s)	785
Psp124BI	GAGCTC	1 cut(s)	442
PspN4I	GGNNCC	2 cut(s)	53, 70
PspPI	GGNCC	2 cut(s)	82, 115
PsuI	RGATCY	4 cut(s)	9, 51, 68, 565
PsyI	GACNNNGTC	1 cut(s)	608
PteI	GCGCGC	2 cut(s)	673, 675
SacI	GAGCTC	1 cut(s)	442
SalI	GTCGAC	1 cut(s)	611
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	6 cut(s)	399, 413, 425, 593, 660, 814
Sau3AI	GATC	6 cut(s)	9, 40, 51, 68, 565, 894
Sau96I	GGNCC	2 cut(s)	82, 115
ScrFI	CCNGG	3 cut(s)	644, 645, 732
SduI	GDGCHC	1 cut(s)	442
SfuI	TTCGAA	3 cut(s)	15, 624, 740
SinI	GGWCC	2 cut(s)	82, 115
SmaI	CCCGGG	1 cut(s)	645
Sse9I	AATT	4 cut(s)	26, 99, 877, 975
SsiI	CCGC	9 cut(s)	185, 399, 412, 415, 592, 718, 813, 859, 902
SspMI	CTAG	2 cut(s)	62, 779
SstI	GAGCTC	1 cut(s)	442
StyD4I	CCNGG	3 cut(s)	642, 643, 730
StyI	CCWWGG	3 cut(s)	490, 515, 680
TaaI	ACNGT	3 cut(s)	283, 610, 634
TaiI	ACGT	3 cut(s)	471, 753, 972
TaqI	TCGA	7 cut(s)	15, 612, 624, 723, 740, 765, 830
TaqII	GACCGA	2 cut(s)	103, 751
TasI	AATT	4 cut(s)	26, 99, 877, 975
TauI	GCSGC	4 cut(s)	401, 415, 595, 816
TfiI	GAWTC	1 cut(s)	821
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	1 cut(s)	585
TseFI	GTSAC	1 cut(s)	333
TseI	GCWGC	2 cut(s)	424, 659
Tsp45I	GTSAC	1 cut(s)	333
TspDTI	ATGAA	1 cut(s)	39
TspGWI	ACGGA	2 cut(s)	95, 396
TspMI	CCCGGG	1 cut(s)	643
TspRI	CASTG	1 cut(s)	585
Tth111I	GACNNNGTC	1 cut(s)	608
VpaK11BI	GGWCC	2 cut(s)	82, 115
XapI	RAATTY	1 cut(s)	99
XceI	RCATGY	1 cut(s)	730
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XmaI	CCCGGG	1 cut(s)	643
XmiI	GTMKAC	1 cut(s)	612
XspI	CTAG	2 cut(s)	62, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.