pycom07g27620

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0010371
Physical Location & Seq
Forward (+)
27270235 .. 27271336
1102 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 906 bp
ATGCCATTATCGACGAGACCTCGAACTTTTCTGCGCTTCTTTTGCATCCTCTTTCCATTTTTCATCTCTTTATCCTACTCAGCCACATTCACTATAACAAACAACTGCCCGGAAACCATCTGGCCCGGTACATTGGCAGGTTCCGGCACCCCTCCGCTCCCAACAACGGGGTTTCGGTTAGACCCCGGCCAGAGTGTGAGACTTCCTTCTACTCCAGGATGGTCAGGGCGTATATGGGCTAGGACAGGCTGCACATTCGACGAGCAGGGAGCTGGCACGTGTCAAACCGGCGACTGTGGAGGCAGGCTGGAATGTGGTGGCAGTGGTGCCACTCCACCTGCCTCTCTCTTTGAAATAACTCTCGGCAATGGCAATGGTTTAGATTTCTACGATGTCAGCATTGTAGACGGCTACAATCTGCCCCTCATTGCCGCACCACGTGGCGTGTTTGGTCCATGTAATGCCACCGGCTGCGCTTCAGATATCAACACAGGTTGCCCGAAAGAGCTTCAGGTGGTGGGAGGAGGAAGCGAAGGGACCGTGATCGGATGCAAGAGCGCCTGCGAGGCATTTGGTTTGGACCAGTACTGCTGCAGCGGACAGTTTGCTAACCCGACGACATGCCAGCCTTCCAAGTATTCCACCATATTCAAAAAAGCTTGTCCAAGAGCTTACAGTTATGCTTTTGATGATGGCACAAGCACTTTTACATGCAAGGCTTTTGATTACGCCATTTTCTTCTGCCCCTACGGCAACGGGACGAGAAATTCAAATTATGCGTTAGCTCCTCCGAGATATCAAGTGCCTGGCAGCGAGAAGGTTGTGCAGATGGTTTATTCTTCTTCTAACACGCTGTTACCAGTTCCGCCGCTAATCCTTCTTCTCATCGTCTACATATTATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

302

Amino Acids

32.0

Weight (kDa)

6.26

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 34 - 249 4.9e-83 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010371)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24620 AT5G24620 AT5G24620 AT5G24620
fragaria_vesca FvH4_7g33310
malus_domestica MD01G1231300.v1.1 MD07G1303300.v1.1
prunus_persica Prupe.2G322000_v2.0.a1
pyrus_communis pycom01g23930 pycom07g27620
rosa_chinensis RchiOBHm_Chr1g0383291
rosa_laevigata RLG00000026116
rosa_multiflora Rmu_sc0007173.1_g000020 Rmu_sc0014196.1_g000004
rosa_roxburghii Rroxscaffold_4G00277430
rosa_rugosa Rorug01G0440400
rosa_samantha Rh1AG465900 Rh1BG423300 Rh1CG436500 Rh1DG456000
rosa_wichuraiana Rw1G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 346
Acc36I ACCTGC 2 cut(s) 128, 346
AccB1I GGYRCC 2 cut(s) 146, 326
AccBSI CCGCTC 1 cut(s) 157
AccI GTMKAC 2 cut(s) 405, 891
AciI CCGC 5 cut(s) 155, 432, 597, 866, 869
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 1 cut(s) 766
AcuI CTGAAG 2 cut(s) 462, 494
AcvI CACGTG 2 cut(s) 279, 440
AdeI CACNNNGTG 1 cut(s) 440
AfaI GTAC 2 cut(s) 130, 587
AfiI CCNNNNNNNGG 2 cut(s) 166, 167
AflIII ACRYGT 1 cut(s) 278
AgsI TTSAA 3 cut(s) 353, 652, 771
AjnI CCWGG 2 cut(s) 214, 805
AluBI AGCT 5 cut(s) 272, 508, 659, 671, 785
AluI AGCT 5 cut(s) 272, 508, 659, 671, 785
Alw26I GTCTC 2 cut(s) 10, 193
AoxI GGCC 2 cut(s) 122, 187
ApeKI GCWGC 5 cut(s) 249, 471, 591, 594, 810
ApoI RAATTY 1 cut(s) 766
AspLEI GCGC 3 cut(s) 36, 476, 560
AspS9I GGNCC 4 cut(s) 123, 452, 537, 580
AsuC2I CCSGG 3 cut(s) 110, 126, 186
AvaII GGWCC 3 cut(s) 452, 537, 580
BanI GGYRCC 2 cut(s) 146, 326
BbrPI CACGTG 2 cut(s) 279, 440
BbvI GCAGC 5 cut(s) 236, 458, 578, 606, 822
BccI CCATC 4 cut(s) 125, 213, 686, 823
BceAI ACGGC 2 cut(s) 424, 766
BciT130I CCWGG 2 cut(s) 216, 807
BcnI CCSGG 3 cut(s) 110, 126, 186
BcoDI GTCTC 2 cut(s) 10, 193
BfaI CTAG 1 cut(s) 240
BfmI CTRYAG 1 cut(s) 592
BfoI RGCGCY 1 cut(s) 561
BfuAI ACCTGC 2 cut(s) 128, 346
BglI GCCNNNNNGGC 2 cut(s) 566, 750
BisI GCNGC 7 cut(s) 250, 432, 472, 592, 595, 811, 869
BlsI GCNGC 7 cut(s) 251, 433, 473, 593, 596, 812, 870
BmcAI AGTACT 1 cut(s) 587
Bme1390I CCNGG 5 cut(s) 110, 126, 186, 216, 807
Bme18I GGWCC 3 cut(s) 452, 537, 580
BmgT120I GGNCC 4 cut(s) 123, 452, 537, 580
BmiI GGNNCC 4 cut(s) 142, 148, 328, 538
BmrFI CCNGG 5 cut(s) 110, 126, 186, 216, 807
BmsI GCATC 2 cut(s) 54, 539
BpmI CTGGAG 1 cut(s) 198
BpuMI CCSGG 3 cut(s) 110, 126, 186
BsaAI YACGTR 2 cut(s) 279, 440
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 184
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 167
Bse118I RCCGGY 2 cut(s) 287, 467
Bse1I ACTGG 2 cut(s) 583, 860
Bse3DI GCAATG 3 cut(s) 373, 379, 426
BseBI CCWGG 2 cut(s) 216, 807
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 3 cut(s) 45, 224, 554
BseLI CCNNNNNNNGG 2 cut(s) 166, 167
BseMI GCAATG 3 cut(s) 373, 379, 426
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 2 cut(s) 583, 860
BseRI GAGGAG 2 cut(s) 537, 777
BseXI GCAGC 5 cut(s) 236, 458, 578, 606, 822
BsgI GTGCAG 2 cut(s) 235, 845
BshFI GGCC 2 cut(s) 124, 189
BshNI GGYRCC 2 cut(s) 146, 326
BsiSI CCGG 6 cut(s) 110, 126, 144, 186, 288, 468
BslFI GGGAC 2 cut(s) 550, 772
BslI CCNNNNNNNGG 2 cut(s) 166, 167
BsmAI GTCTC 2 cut(s) 10, 193
BsmFI GGGAC 2 cut(s) 550, 772
BsnI GGCC 2 cut(s) 124, 189
Bso31I GGTCTC 1 cut(s) 10
Bsp143I GATC 1 cut(s) 543
BspACI CCGC 5 cut(s) 155, 432, 597, 866, 869
BspANI GGCC 2 cut(s) 124, 189
BspCNI CTCAG 1 cut(s) 92
BspLI GGNNCC 4 cut(s) 142, 148, 328, 538
BspMAI CTGCAG 1 cut(s) 596
BspMI ACCTGC 2 cut(s) 128, 346
BspT107I GGYRCC 2 cut(s) 146, 326
BspTNI GGTCTC 1 cut(s) 10
BsrBI CCGCTC 1 cut(s) 157
BsrDI GCAATG 3 cut(s) 373, 379, 426
BsrFI RCCGGY 2 cut(s) 287, 467
BsrI ACTGG 2 cut(s) 583, 860
BssAI RCCGGY 2 cut(s) 287, 467
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 1 cut(s) 543
Bst2UI CCWGG 2 cut(s) 216, 807
Bst4CI ACNGT 4 cut(s) 296, 541, 603, 677
BstBAI YACGTR 2 cut(s) 279, 440
BstC8I GCNNGC 4 cut(s) 274, 305, 562, 626
BstDEI CTNAG 1 cut(s) 79
BstF5I GGATG 3 cut(s) 45, 224, 554
BstH2I RGCGCY 1 cut(s) 561
BstHHI GCGC 3 cut(s) 36, 476, 560
BstKTI GATC 1 cut(s) 546
BstMAI GTCTC 2 cut(s) 10, 193
BstMBI GATC 1 cut(s) 543
BstMWI GCNNNNNNNGC 3 cut(s) 42, 566, 750
BstNI CCWGG 2 cut(s) 216, 807
BstNSI RCATGY 2 cut(s) 624, 714
BstSCI CCNGG 5 cut(s) 108, 124, 184, 214, 805
BstSFI CTRYAG 1 cut(s) 592
BstV1I GCAGC 5 cut(s) 236, 458, 578, 606, 822
BsuRI GGCC 2 cut(s) 124, 189
BtsCI GGATG 3 cut(s) 45, 224, 554
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 1 cut(s) 328
BveI ACCTGC 2 cut(s) 128, 346
Cac8I GCNNGC 4 cut(s) 274, 305, 562, 626
CfoI GCGC 3 cut(s) 36, 476, 560
Cfr10I RCCGGY 2 cut(s) 287, 467
Cfr13I GGNCC 4 cut(s) 123, 452, 537, 580
Csp6I GTAC 2 cut(s) 129, 586
CviAII CATG 3 cut(s) 456, 621, 711
CviQI GTAC 2 cut(s) 129, 586
DdeI CTNAG 1 cut(s) 79
DpnI GATC 1 cut(s) 545
DpnII GATC 1 cut(s) 543
DraIII CACNNNGTG 1 cut(s) 440
EaeI YGGCCR 1 cut(s) 187
EciI GGCGGA 1 cut(s) 855
Eco31I GGTCTC 1 cut(s) 10
Eco32I GATATC 2 cut(s) 484, 797
Eco47I GGWCC 3 cut(s) 452, 537, 580
Eco57I CTGAAG 2 cut(s) 462, 494
Eco72I CACGTG 2 cut(s) 279, 440
EcoRII CCWGG 2 cut(s) 214, 805
EcoRV GATATC 2 cut(s) 484, 797
FaeI CATG 3 cut(s) 459, 624, 714
FaqI GGGAC 2 cut(s) 550, 772
FatI CATG 3 cut(s) 455, 620, 710
FblI GTMKAC 2 cut(s) 405, 891
Fnu4HI GCNGC 7 cut(s) 250, 432, 472, 592, 595, 811, 869
FokI GGATG 3 cut(s) 32, 231, 561
Fsp4HI GCNGC 7 cut(s) 250, 432, 472, 592, 595, 811, 869
FspBI CTAG 1 cut(s) 240
GlaI GCGC 3 cut(s) 35, 475, 559
GluI GCNGC 7 cut(s) 250, 432, 472, 592, 595, 811, 869
GsuI CTGGAG 1 cut(s) 198
HaeII RGCGCY 1 cut(s) 561
HaeIII GGCC 2 cut(s) 124, 189
HapII CCGG 6 cut(s) 110, 126, 144, 186, 288, 468
HhaI GCGC 3 cut(s) 36, 476, 560
Hin1II CATG 3 cut(s) 459, 624, 714
Hin6I GCGC 3 cut(s) 34, 474, 558
HinP1I GCGC 3 cut(s) 34, 474, 558
HindIII AAGCTT 1 cut(s) 657
HpaII CCGG 6 cut(s) 110, 126, 144, 186, 288, 468
Hpy166II GTNNAC 2 cut(s) 406, 892
Hpy188I TCNGA 3 cut(s) 481, 548, 792
Hpy188III TCNNGA 1 cut(s) 903
Hpy8I GTNNAC 2 cut(s) 406, 892
Hpy99I CGWCG 3 cut(s) 16, 263, 619
HpyAV CCTTC 5 cut(s) 216, 527, 639, 811, 887
HpyCH4III ACNGT 4 cut(s) 296, 541, 603, 677
HpyCH4IV ACGT 2 cut(s) 278, 439
HpyCH4V TGCA 6 cut(s) 45, 252, 552, 594, 714, 826
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 566, 750
HpyF3I CTNAG 1 cut(s) 79
HpySE526I ACGT 2 cut(s) 278, 439
Hsp92II CATG 3 cut(s) 459, 624, 714
HspAI GCGC 3 cut(s) 34, 474, 558
Kzo9I GATC 1 cut(s) 543
LmnI GCTCC 3 cut(s) 162, 269, 790
Lsp1109I GCAGC 5 cut(s) 236, 458, 578, 606, 822
LweI GCATC 2 cut(s) 54, 539
MaeI CTAG 1 cut(s) 240
MaeII ACGT 2 cut(s) 278, 439
MaeIII GTNAC 1 cut(s) 855
MalI GATC 1 cut(s) 545
MbiI CCGCTC 1 cut(s) 157
MboI GATC 1 cut(s) 543
MboII GAAGA 4 cut(s) 730, 831, 834, 872
MluCI AATT 2 cut(s) 766, 772
MspA1I CMGCKG 1 cut(s) 597
MspI CCGG 6 cut(s) 110, 126, 144, 186, 288, 468
MspR9I CCNGG 5 cut(s) 110, 126, 186, 216, 807
MvaI CCWGG 2 cut(s) 216, 807
MwoI GCNNNNNNNGC 3 cut(s) 42, 566, 750
NciI CCSGG 3 cut(s) 110, 126, 186
NdeII GATC 1 cut(s) 543
NlaIII CATG 3 cut(s) 459, 624, 714
NlaIV GGNNCC 4 cut(s) 142, 148, 328, 538
NmeAIII GCCGAG 1 cut(s) 342
NspI RCATGY 2 cut(s) 624, 714
PaqCI CACCTGC 1 cut(s) 346
PfoI TCCNGGA 1 cut(s) 214
PkrI GCNGC 7 cut(s) 251, 433, 473, 593, 596, 812, 870
PmaCI CACGTG 2 cut(s) 279, 440
PmlI CACGTG 2 cut(s) 279, 440
Ppu21I YACGTR 2 cut(s) 279, 440
Psp6I CCWGG 2 cut(s) 214, 805
PspCI CACGTG 2 cut(s) 279, 440
PspGI CCWGG 2 cut(s) 214, 805
PspN4I GGNNCC 4 cut(s) 142, 148, 328, 538
PspPI GGNCC 4 cut(s) 123, 452, 537, 580
PstI CTGCAG 1 cut(s) 596
RsaI GTAC 2 cut(s) 130, 587
RsaNI GTAC 2 cut(s) 129, 586
SatI GCNGC 7 cut(s) 250, 432, 472, 592, 595, 811, 869
Sau3AI GATC 1 cut(s) 543
Sau96I GGNCC 4 cut(s) 123, 452, 537, 580
ScaI AGTACT 1 cut(s) 587
ScrFI CCNGG 5 cut(s) 110, 126, 186, 216, 807
SfaNI GCATC 2 cut(s) 54, 539
SfcI CTRYAG 1 cut(s) 592
SinI GGWCC 3 cut(s) 452, 537, 580
Sse9I AATT 2 cut(s) 766, 772
SsiI CCGC 5 cut(s) 155, 432, 597, 866, 869
SspMI CTAG 1 cut(s) 240
StyD4I CCNGG 5 cut(s) 108, 124, 184, 214, 805
TaaI ACNGT 4 cut(s) 296, 541, 603, 677
TaiI ACGT 2 cut(s) 281, 442
TaqI TCGA 3 cut(s) 11, 22, 258
TasI AATT 2 cut(s) 766, 772
TatI WGTACW 1 cut(s) 585
TauI GCSGC 2 cut(s) 434, 871
TscAI CASTG 1 cut(s) 328
TseI GCWGC 5 cut(s) 249, 471, 591, 594, 810
TspDTI ATGAA 1 cut(s) 52
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 3 cut(s) 452, 537, 580
XapI RAATTY 1 cut(s) 766
XceI RCATGY 2 cut(s) 624, 714
XmiI GTMKAC 2 cut(s) 405, 891
XspI CTAG 1 cut(s) 240
ZrmI AGTACT 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.