Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0011530

Physical Location & Seq

Genomic Coordinates Reverse (-)

3592016 .. 3593848

Gene Structure 1833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGACTCAACGCGGGTGAACACTTCTCTCGGCCTTAATCTTGTTCCGTTTTGCCGTGCCAATGATCATCGAGCTCCTGCCACTATGCAACAAGAGTTTGAAGGGGGTTGTGCTCAACTCCAAGGCAATGCATTGGTGAAAGAAGAGCAGGCAGCTAGTCATCATGATGTGTTGGCCGAAGAGTTGAATAGGGTAAGTGTGGAGAACAAGAAGCTGACTGAGGTGCTAACTGCCCTCTGCGAGAATTACAACACTTTGCAATCCCATGTGAGGGAATTGATGACCACCCAGCAGCAGCAAAACAACACATCTGATATTTATAGGAAGCGAAAGGCAGACAGTGAAGATTACAACAACGTGATTGGATTAATTAATCCCGGGACTAATACTGACACCAGTTCCATCAGTGATGATAAAGAGTATTCATGCAAGAGGCTAAAGGAGAACACCAACTTAAAGATTTCCAGGGTTTATGTTCACACCGATGCATCCGATACAGGCCTCATTGTGAATGATGGATACCAATGGAGGAAATATGGTCAGAAGGTCACAAGAGATAACCCATCTCCTACAGCTTACTACAAGTGCTCCTTTGCCCCAAGTTGCCCTGTTAAAAAGAAGGTGCAAAAAAGTGCTGAAAATCCATGCCTACTGGTGGCTACATACGAAGGAGAACACAACCACATGCATCCTGGTAAGCGAGCTGAAGTTACACTAATAGCCCCGGTATCTCCAAAACAGAACCATCAGCTTATTACTAGTCCAATTTCCGTTTTACCATCCGTGGCAAAGAGATCTGCAGCTCCAACATTTTTATGTGACGATAATCGAAGAAGTCCCAATAGTGCCATGTACCCCCAAGAAACTCAAGCTCCGGCGTTCCAACAGTTTTTGGTACAACAAATGGCTTCTTCCCTGACCAAAGATCCCGATTTCACATCTGCTCTTGCTGCTGCCATTTCAGGAAGAATTTCAGACCACACTATGGCCCGAAAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002237 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

334

Amino Acids

37.09

Weight (kDa)

8.05

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	171 - 228	6.3e-23	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g41060 FvH4_2g41060 FvH4_2g41060
malus_domestica	MD00G1143500.v1.1 MD15G1039500.v1.1
prunus_persica	Prupe.1G393000_v2.0.a1
pyrus_communis	pycom08g04760 pycom15g03690
rosa_chinensis	RchiOBHm_Chr6g0299501
rosa_laevigata	RLG00000011426
rosa_multiflora	Rmu_sc0001184.1_g000004
rosa_roxburghii	Rroxscaffold_7G00168630
rosa_rugosa	Rorug06G0289200 Rorug06G0289200 Rorug06G0289300
rosa_samantha	Rh6AG400500 Rh6BG409200 Rh6CG414700 Rh6DG401600
rosa_wichuraiana	Rw6G035060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	985
AccII	CGCG	1 cut(s)	13
AciI	CCGC	1 cut(s)	13
AclWI	GGATC	1 cut(s)	920
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	1 cut(s)	969
AcuI	CTGAAG	1 cut(s)	726
AfaI	GTAC	2 cut(s)	854, 897
AfiI	CCNNNNNNNGG	5 cut(s)	270, 271, 655, 985, 996
AgsI	TTSAA	2 cut(s)	101, 187
AhlI	ACTAGT	1 cut(s)	758
AjnI	CCWGG	2 cut(s)	464, 691
AluBI	AGCT	8 cut(s)	74, 155, 214, 575, 704, 751, 803, 872
AluI	AGCT	8 cut(s)	74, 155, 214, 575, 704, 751, 803, 872
Alw21I	GWGCWC	3 cut(s)	76, 115, 590
AlwI	GGATC	1 cut(s)	920
Ama87I	CYCGRG	1 cut(s)	377
AoxI	GGCC	4 cut(s)	31, 174, 499, 987
ApeKI	GCWGC	6 cut(s)	152, 292, 295, 800, 950, 953
ApoI	RAATTY	1 cut(s)	969
AseI	ATTAAT	2 cut(s)	368, 372
Asp700I	GAANNNNTTC	1 cut(s)	970
AspS9I	GGNCC	1 cut(s)	988
AsuC2I	CCSGG	3 cut(s)	378, 379, 725
AsuHPI	GGTGA	2 cut(s)	28, 148
AvaI	CYCGRG	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	76
Bbv12I	GWGCWC	3 cut(s)	76, 115, 590
BbvI	GCAGC	6 cut(s)	164, 304, 307, 812, 937, 940
BccI	CCATC	5 cut(s)	410, 509, 571, 753, 787
BceAI	ACGGC	1 cut(s)	39
BciT130I	CCWGG	2 cut(s)	466, 693
BciVI	GTATCC	1 cut(s)	512
BclI	TGATCA	1 cut(s)	64
BcnI	CCSGG	3 cut(s)	378, 379, 725
BcuI	ACTAGT	1 cut(s)	758
BfaI	CTAG	2 cut(s)	156, 759
BfmI	CTRYAG	2 cut(s)	570, 798
BfuI	GTATCC	1 cut(s)	512
BglII	AGATCT	1 cut(s)	794
BisI	GCNGC	6 cut(s)	153, 293, 296, 801, 951, 954
BlsI	GCNGC	6 cut(s)	154, 294, 297, 802, 952, 955
Bme1390I	CCNGG	5 cut(s)	378, 379, 466, 693, 725
BmeT110I	CYCGRG	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	988
BmrFI	CCNGG	5 cut(s)	378, 379, 466, 693, 725
BmsI	GCATC	3 cut(s)	475, 497, 697
BpuEI	CTTGAG	1 cut(s)	852
BpuMI	CCSGG	3 cut(s)	378, 379, 725
BsaJI	CCNNGG	5 cut(s)	121, 377, 465, 723, 783
BsaXI	ACNNNNNCTCC	4 cut(s)	572, 602, 856, 886
Bsc4I	CCNNNNNNNGG	5 cut(s)	270, 271, 655, 985, 996
Bse1I	ACTGG	2 cut(s)	396, 657
Bse3DI	GCAATG	1 cut(s)	133
BseBI	CCWGG	2 cut(s)	466, 693
BseDI	CCNNGG	5 cut(s)	121, 377, 465, 723, 783
BseGI	GGATG	3 cut(s)	488, 688, 779
BseLI	CCNNNNNNNGG	5 cut(s)	270, 271, 655, 985, 996
BseMI	GCAATG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	2 cut(s)	396, 657
BseXI	GCAGC	6 cut(s)	164, 304, 307, 812, 937, 940
BseYI	CCCAGC	1 cut(s)	288
Bsh1236I	CGCG	1 cut(s)	13
BshFI	GGCC	4 cut(s)	33, 176, 501, 989
BsiHKAI	GWGCWC	3 cut(s)	76, 115, 590
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	3 cut(s)	378, 725, 875
BslFI	GGGAC	2 cut(s)	394, 822
BslI	CCNNNNNNNGG	5 cut(s)	270, 271, 655, 985, 996
BsmFI	GGGAC	2 cut(s)	394, 822
BsnI	GGCC	4 cut(s)	33, 176, 501, 989
BsoBI	CYCGRG	1 cut(s)	377
Bsp1286I	GDGCHC	3 cut(s)	76, 115, 590
Bsp143I	GATC	3 cut(s)	64, 794, 925
BspACI	CCGC	1 cut(s)	13
BspANI	GGCC	4 cut(s)	33, 176, 501, 989
BspCNI	CTCAG	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	13
BspHI	TCATGA	1 cut(s)	163
BspMAI	CTGCAG	1 cut(s)	802
BspPI	GGATC	1 cut(s)	920
BspQI	GCTCTTC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	133
BsrI	ACTGG	2 cut(s)	396, 657
BssECI	CCNNGG	5 cut(s)	121, 377, 465, 723, 783
BssMI	GATC	3 cut(s)	64, 794, 925
BssT1I	CCWWGG	1 cut(s)	121
Bst2UI	CCWGG	2 cut(s)	466, 693
Bst4CI	ACNGT	2 cut(s)	341, 888
Bst6I	CTCTTC	2 cut(s)	138, 174
BstC8I	GCNNGC	2 cut(s)	150, 702
BstDEI	CTNAG	1 cut(s)	219
BstDSI	CCRYGG	1 cut(s)	783
BstF5I	GGATG	3 cut(s)	488, 688, 779
BstFNI	CGCG	1 cut(s)	13
BstKTI	GATC	3 cut(s)	67, 797, 928
BstMBI	GATC	3 cut(s)	64, 794, 925
BstMWI	GCNNNNNNNGC	1 cut(s)	950
BstNI	CCWGG	2 cut(s)	466, 693
BstNSI	RCATGY	1 cut(s)	688
BstSCI	CCNGG	5 cut(s)	376, 377, 464, 691, 723
BstSFI	CTRYAG	2 cut(s)	570, 798
BstUI	CGCG	1 cut(s)	13
BstV1I	GCAGC	6 cut(s)	164, 304, 307, 812, 937, 940
BstX2I	RGATCY	2 cut(s)	794, 925
BstYI	RGATCY	2 cut(s)	794, 925
BsuI	GTATCC	1 cut(s)	512
BsuRI	GGCC	4 cut(s)	33, 176, 501, 989
BtgI	CCRYGG	1 cut(s)	783
BtsCI	GGATG	3 cut(s)	488, 688, 779
BtsIMutI	CAGTG	2 cut(s)	346, 412
Cac8I	GCNNGC	2 cut(s)	150, 702
CciI	TCATGA	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	988
Cfr9I	CCCGGG	1 cut(s)	377
Csp6I	GTAC	2 cut(s)	853, 896
CviAII	CATG	6 cut(s)	164, 266, 426, 645, 685, 850
CviQI	GTAC	2 cut(s)	853, 896
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	3 cut(s)	66, 796, 927
DpnII	GATC	3 cut(s)	64, 794, 925
EaeI	YGGCCR	1 cut(s)	174
Eam1104I	CTCTTC	2 cut(s)	138, 174
EarI	CTCTTC	2 cut(s)	138, 174
Ecl136II	GAGCTC	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	121
Eco147I	AGGCCT	1 cut(s)	501
Eco24I	GRGCYC	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	74
Eco57I	CTGAAG	1 cut(s)	726
Eco88I	CYCGRG	1 cut(s)	377
EcoICRI	GAGCTC	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	464, 691
EcoT14I	CCWWGG	1 cut(s)	121
EcoT22I	ATGCAT	3 cut(s)	133, 490, 690
EcoT38I	GRGCYC	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	6 cut(s)	167, 269, 429, 648, 688, 853
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FaqI	GGGAC	2 cut(s)	394, 822
FatI	CATG	6 cut(s)	163, 265, 425, 644, 684, 849
FauI	CCCGC	1 cut(s)	6
FbaI	TGATCA	1 cut(s)	64
Fnu4HI	GCNGC	6 cut(s)	153, 293, 296, 801, 951, 954
FokI	GGATG	3 cut(s)	475, 675, 766
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	6 cut(s)	153, 293, 296, 801, 951, 954
FspBI	CTAG	2 cut(s)	156, 759
GluI	GCNGC	6 cut(s)	153, 293, 296, 801, 951, 954
GsaI	CCCAGC	1 cut(s)	292
HaeIII	GGCC	4 cut(s)	33, 176, 501, 989
HapII	CCGG	3 cut(s)	378, 725, 875
Hin1II	CATG	6 cut(s)	167, 269, 429, 648, 688, 853
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	3 cut(s)	378, 725, 875
HphI	GGTGA	2 cut(s)	28, 148
Hpy166II	GTNNAC	2 cut(s)	19, 478
Hpy188I	TCNGA	4 cut(s)	313, 493, 543, 976
Hpy188III	TCNNGA	3 cut(s)	164, 929, 963
Hpy8I	GTNNAC	2 cut(s)	19, 478
HpyAV	CCTTC	4 cut(s)	95, 538, 613, 662
HpyCH4III	ACNGT	2 cut(s)	341, 888
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	8 cut(s)	88, 131, 259, 429, 488, 625, 688, 800
HpyF10VI	GCNNNNNNNGC	1 cut(s)	950
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	6 cut(s)	167, 269, 429, 648, 688, 853
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	3 cut(s)	64, 794, 925
LguI	GCTCTTC	1 cut(s)	138
LmnI	GCTCC	4 cut(s)	79, 593, 808, 877
Lsp1109I	GCAGC	6 cut(s)	164, 304, 307, 812, 937, 940
LweI	GCATC	3 cut(s)	475, 497, 697
MaeI	CTAG	2 cut(s)	156, 759
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	3 cut(s)	547, 709, 818
MalI	GATC	3 cut(s)	66, 796, 927
MboI	GATC	3 cut(s)	64, 794, 925
MboII	GAAGA	6 cut(s)	155, 191, 356, 843, 903, 978
MflI	RGATCY	2 cut(s)	794, 925
MhlI	GDGCHC	3 cut(s)	76, 115, 590
MluCI	AATT	5 cut(s)	244, 275, 369, 765, 969
MmeI	TCCRAC	2 cut(s)	830, 907
MnlI	CCTC	6 cut(s)	214, 245, 264, 426, 512, 522
Mph1103I	ATGCAT	3 cut(s)	133, 490, 690
MroXI	GAANNNNTTC	1 cut(s)	970
MseI	TTAA	5 cut(s)	36, 368, 372, 455, 612
MslI	CAYNNNNRTG	3 cut(s)	165, 483, 814
MspI	CCGG	3 cut(s)	378, 725, 875
MspR9I	CCNGG	5 cut(s)	378, 379, 466, 693, 725
MvaI	CCWGG	2 cut(s)	466, 693
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	1 cut(s)	950
NciI	CCSGG	3 cut(s)	378, 379, 725
NdeII	GATC	3 cut(s)	64, 794, 925
NlaIII	CATG	6 cut(s)	167, 269, 429, 648, 688, 853
NmeAIII	GCCGAG	1 cut(s)	9
NmuCI	GTSAC	2 cut(s)	547, 818
NsiI	ATGCAT	3 cut(s)	133, 490, 690
NspI	RCATGY	1 cut(s)	688
PacI	TTAATTAA	1 cut(s)	372
PagI	TCATGA	1 cut(s)	163
PceI	AGGCCT	1 cut(s)	501
PciSI	GCTCTTC	1 cut(s)	138
PdmI	GAANNNNTTC	1 cut(s)	970
PflMI	CCANNNNNTGG	1 cut(s)	985
PkrI	GCNGC	6 cut(s)	154, 294, 297, 802, 952, 955
PshBI	ATTAAT	2 cut(s)	368, 372
Psp124BI	GAGCTC	1 cut(s)	76
Psp6I	CCWGG	2 cut(s)	464, 691
PspFI	CCCAGC	1 cut(s)	288
PspGI	CCWGG	2 cut(s)	464, 691
PspPI	GGNCC	1 cut(s)	988
PstI	CTGCAG	1 cut(s)	802
PsuI	RGATCY	2 cut(s)	794, 925
RsaI	GTAC	2 cut(s)	854, 897
RsaNI	GTAC	2 cut(s)	853, 896
RseI	CAYNNNNRTG	3 cut(s)	165, 483, 814
SacI	GAGCTC	1 cut(s)	76
SapI	GCTCTTC	1 cut(s)	138
SaqAI	TTAA	5 cut(s)	36, 368, 372, 455, 612
SatI	GCNGC	6 cut(s)	153, 293, 296, 801, 951, 954
Sau3AI	GATC	3 cut(s)	64, 794, 925
Sau96I	GGNCC	1 cut(s)	988
ScrFI	CCNGG	5 cut(s)	378, 379, 466, 693, 725
SduI	GDGCHC	3 cut(s)	76, 115, 590
SfaNI	GCATC	3 cut(s)	475, 497, 697
SfcI	CTRYAG	2 cut(s)	570, 798
SmaI	CCCGGG	1 cut(s)	379
SmiMI	CAYNNNNRTG	3 cut(s)	165, 483, 814
SmlI	CTYRAG	1 cut(s)	867
SmoI	CTYRAG	1 cut(s)	867
SpeI	ACTAGT	1 cut(s)	758
Sse9I	AATT	5 cut(s)	244, 275, 369, 765, 969
SseBI	AGGCCT	1 cut(s)	501
SsiI	CCGC	1 cut(s)	13
SspMI	CTAG	2 cut(s)	156, 759
SstI	GAGCTC	1 cut(s)	76
StuI	AGGCCT	1 cut(s)	501
StyD4I	CCNGG	5 cut(s)	376, 377, 464, 691, 723
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	2 cut(s)	341, 888
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	2 cut(s)	70, 829
TasI	AATT	5 cut(s)	244, 275, 369, 765, 969
Tru1I	TTAA	5 cut(s)	36, 368, 372, 455, 612
Tru9I	TTAA	5 cut(s)	36, 368, 372, 455, 612
TscAI	CASTG	2 cut(s)	346, 412
TseFI	GTSAC	2 cut(s)	547, 818
TseI	GCWGC	6 cut(s)	152, 292, 295, 800, 950, 953
Tsp45I	GTSAC	2 cut(s)	547, 818
TspDTI	ATGAA	1 cut(s)	414
TspGWI	ACGGA	3 cut(s)	36, 760, 772
TspMI	CCCGGG	1 cut(s)	377
TspRI	CASTG	2 cut(s)	346, 412
Van91I	CCANNNNNTGG	1 cut(s)	985
VspI	ATTAAT	2 cut(s)	368, 372
XapI	RAATTY	1 cut(s)	969
XceI	RCATGY	1 cut(s)	688
XcmI	CCANNNNNNNNNTGG	1 cut(s)	689
XmaI	CCCGGG	1 cut(s)	377
XmnI	GAANNNNTTC	1 cut(s)	970
XspI	CTAG	2 cut(s)	156, 759
Zsp2I	ATGCAT	3 cut(s)	133, 490, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.