pycom08g05120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0017731
Physical Location & Seq
Reverse (-)
3934810 .. 3936263
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 708 bp
ATGATTAATTTTGGTTGTTTTTGCTTTGTCCACGTCTCCTACGTGGCACAGACCCTGCCAGCGTGTCACGTGCTTTTCTCCCCCATTTATAATCCATTTGTCCTCGCTTTTTCACACACAATACACACTCACTCCTCTCTCTCCTCTGTTTTGCTCTTATCAGAGTCCGACCGCATGGAAGCAGCTGCCCCAGAGTTTCCTCCGCCGGAGTCCGCCGTCTCCGTCTACATCGCCGGAAAGTTTCCTGAGCTCAGTGACGAGCTCTTGCCAGAGATTCCTATCAAAGAAGAGTTGATTGAGGAGGTCATGCAAGAGCTCTACAAGGAGATAACGACCGCCAACGCCCCCGCCGCTACCACCACCACTACAGCTACTTCTGATTGCACCAAGCCGTCTTCACCGGCGGCGACATTTCCGACGCCGTCGCTGGTGCTCGGGAATGGGAAGAGCGAGAGCTGCGGGGCGTCGGTTTCTGACTCCGCATCAACGGTGATGGTTGGAGTGGAGTTCGTGGGGCCAGCCGGAAAAAAAGGTGGATCGCCGGAGAATGGGGCGTGGAGGAGTGAATGCGGGAGGAGTACTCATGGGTTGGTGGTTGGGAAGGGAGGAATGGACGGCTGTGATCATGCAGGGGAGGTTGATGATGAATGGCTGGAGAGAGTGCTGATGAGCACGTGGGGCCCGGTAGACCTTGATCCATGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

24.97

Weight (kDa)

4.56

Isoelectric Point (pI)

52.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017731)

Species Orthologous Gene IDs
malus_domestica MD08G1061700.v1.1 MD15G1060000.v1.1
prunus_persica Prupe.1G411900_v2.0.a1
pyrus_communis pycom08g05120
rosa_chinensis RchiOBHm_Chr6g0310921
rosa_laevigata RLG00000010450
rosa_roxburghii Rroxscaffold_7G00158170
rosa_rugosa Rorug06G0384000
rosa_samantha Rh6AG497900 Rh6BG508300 Rh6CG514200 Rh6DG500600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
AccI GTMKAC 2 cut(s) 225, 687
AclWI GGATC 2 cut(s) 544, 689
AcvI CACGTG 2 cut(s) 70, 675
AcyI GRCGYC 2 cut(s) 419, 464
AfaI GTAC 1 cut(s) 580
AfiI CCNNNNNNNGG 1 cut(s) 548
AjiI CACGTC 1 cut(s) 34
AluBI AGCT 6 cut(s) 185, 250, 262, 316, 371, 456
AluI AGCT 6 cut(s) 185, 250, 262, 316, 371, 456
Alw21I GWGCWC 5 cut(s) 252, 264, 318, 435, 674
Alw26I GTCTC 2 cut(s) 40, 223
AlwI GGATC 2 cut(s) 544, 689
AlwNI CAGNNNCTG 1 cut(s) 55
Ama87I CYCGRG 1 cut(s) 434
AoxI GGCC 2 cut(s) 515, 679
ApaI GGGCCC 1 cut(s) 683
ApeKI GCWGC 3 cut(s) 182, 185, 456
AseI ATTAAT 1 cut(s) 6
AspS9I GGNCC 3 cut(s) 515, 679, 680
AsuC2I CCSGG 1 cut(s) 683
AsuHPI GGTGA 2 cut(s) 390, 502
AvaI CYCGRG 1 cut(s) 434
BaeGI GKGCMC 1 cut(s) 683
BanII GRGCYC 4 cut(s) 252, 264, 318, 683
BbrPI CACGTG 2 cut(s) 70, 675
BbsI GAAGAC 1 cut(s) 387
Bbv12I GWGCWC 5 cut(s) 252, 264, 318, 435, 674
BbvI GCAGC 3 cut(s) 172, 194, 443
BccI CCATC 1 cut(s) 487
BceAI ACGGC 4 cut(s) 200, 376, 406, 631
BclI TGATCA 1 cut(s) 622
BcnI CCSGG 1 cut(s) 683
BcoDI GTCTC 2 cut(s) 40, 223
BfmI CTRYAG 1 cut(s) 366
BisI GCNGC 5 cut(s) 183, 186, 351, 405, 457
BlsI GCNGC 5 cut(s) 184, 187, 352, 406, 458
BmcAI AGTACT 1 cut(s) 580
Bme1390I CCNGG 1 cut(s) 683
BmeT110I CYCGRG 1 cut(s) 434
BmgBI CACGTC 1 cut(s) 34
BmgT120I GGNCC 3 cut(s) 515, 679, 680
BmiI GGNNCC 3 cut(s) 516, 680, 681
BmrFI CCNGG 1 cut(s) 683
BmsI GCATC 1 cut(s) 491
BpiI GAAGAC 1 cut(s) 387
BplI GAGNNNNNCTC 2 cut(s) 565, 597
BpmI CTGGAG 1 cut(s) 674
Bpu10I CCTNAGC 1 cut(s) 246
BpuMI CCSGG 1 cut(s) 683
BsaAI YACGTR 3 cut(s) 43, 70, 675
BsaBI GATNNNNATC 1 cut(s) 278
BsaHI GRCGYC 2 cut(s) 419, 464
BsaJI CCNNGG 1 cut(s) 698
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bsc4I CCNNNNNNNGG 1 cut(s) 548
Bse118I RCCGGY 1 cut(s) 400
Bse8I GATNNNNATC 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 698
BseJI GATNNNNATC 1 cut(s) 278
BseLI CCNNNNNNNGG 1 cut(s) 548
BseMII CTCAG 2 cut(s) 237, 265
BseRI GAGGAG 5 cut(s) 124, 133, 314, 574, 589
BseSI GKGCMC 1 cut(s) 683
BseXI GCAGC 3 cut(s) 172, 194, 443
Bsh1285I CGRYCG 2 cut(s) 172, 336
BshFI GGCC 2 cut(s) 517, 681
BsiEI CGRYCG 2 cut(s) 172, 336
BsiHKAI GWGCWC 5 cut(s) 252, 264, 318, 435, 674
BsiHKCI CYCGRG 1 cut(s) 434
BsiSI CCGG 6 cut(s) 206, 234, 401, 522, 542, 683
BslI CCNNNNNNNGG 1 cut(s) 548
BsmAI GTCTC 2 cut(s) 40, 223
BsmBI CGTCTC 2 cut(s) 40, 223
BsmI GAATGC 1 cut(s) 572
BsnI GGCC 2 cut(s) 517, 681
BsoBI CYCGRG 1 cut(s) 434
Bsp120I GGGCCC 1 cut(s) 679
Bsp1286I GDGCHC 6 cut(s) 252, 264, 318, 435, 674, 683
Bsp143I GATC 3 cut(s) 536, 622, 694
Bsp19I CCATGG 1 cut(s) 698
BspANI GGCC 2 cut(s) 517, 681
BspCNI CTCAG 2 cut(s) 238, 264
BspLI GGNNCC 3 cut(s) 516, 680, 681
BspPI GGATC 2 cut(s) 544, 689
BspQI GCTCTTC 1 cut(s) 440
BsrFI RCCGGY 1 cut(s) 400
BssAI RCCGGY 1 cut(s) 400
BssECI CCNNGG 1 cut(s) 698
BssMI GATC 3 cut(s) 536, 622, 694
BssNI GRCGYC 2 cut(s) 419, 464
BssT1I CCWWGG 1 cut(s) 698
Bst4CI ACNGT 1 cut(s) 490
Bst6I CTCTTC 2 cut(s) 282, 440
BstACI GRCGYC 2 cut(s) 419, 464
BstBAI YACGTR 3 cut(s) 43, 70, 675
BstC8I GCNNGC 2 cut(s) 60, 519
BstDEI CTNAG 2 cut(s) 246, 251
BstDSI CCRYGG 1 cut(s) 698
BstKTI GATC 3 cut(s) 539, 625, 697
BstMAI GTCTC 2 cut(s) 40, 223
BstMBI GATC 3 cut(s) 536, 622, 694
BstMCI CGRYCG 2 cut(s) 172, 336
BstMWI GCNNNNNNNGC 3 cut(s) 350, 456, 678
BstSCI CCNGG 1 cut(s) 681
BstSFI CTRYAG 1 cut(s) 366
BstSLI GKGCMC 1 cut(s) 683
BstV1I GCAGC 3 cut(s) 172, 194, 443
BstV2I GAAGAC 1 cut(s) 387
BsuRI GGCC 2 cut(s) 517, 681
BtgI CCRYGG 1 cut(s) 698
BtgZI GCGATG 1 cut(s) 214
BtrI CACGTC 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 259
Cac8I GCNNGC 2 cut(s) 60, 519
CaiI CAGNNNCTG 1 cut(s) 55
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 3 cut(s) 515, 679, 680
CseI GACGC 2 cut(s) 427, 453
Csp6I GTAC 1 cut(s) 579
CviAII CATG 5 cut(s) 175, 307, 584, 626, 699
CviQI GTAC 1 cut(s) 579
DdeI CTNAG 2 cut(s) 246, 251
DpnI GATC 3 cut(s) 538, 624, 696
DpnII GATC 3 cut(s) 536, 622, 694
Eam1104I CTCTTC 2 cut(s) 282, 440
EarI CTCTTC 2 cut(s) 282, 440
EciI GGCGGA 2 cut(s) 192, 202
Ecl136II GAGCTC 3 cut(s) 250, 262, 316
Eco130I CCWWGG 1 cut(s) 698
Eco24I GRGCYC 4 cut(s) 252, 264, 318, 683
Eco53kI GAGCTC 3 cut(s) 250, 262, 316
Eco72I CACGTG 2 cut(s) 70, 675
Eco88I CYCGRG 1 cut(s) 434
EcoICRI GAGCTC 3 cut(s) 250, 262, 316
EcoO109I RGGNCCY 1 cut(s) 679
EcoT14I CCWWGG 1 cut(s) 698
EcoT38I GRGCYC 4 cut(s) 252, 264, 318, 683
ErhI CCWWGG 1 cut(s) 698
Esp3I CGTCTC 2 cut(s) 40, 223
FaeI CATG 5 cut(s) 178, 310, 587, 629, 702
FaiI YATR 6 cut(s) 90, 176, 308, 585, 627, 700
FatI CATG 5 cut(s) 174, 306, 583, 625, 698
FauI CCCGC 3 cut(s) 355, 452, 563
FbaI TGATCA 1 cut(s) 622
FblI GTMKAC 2 cut(s) 225, 687
Fnu4HI GCNGC 5 cut(s) 183, 186, 351, 405, 457
FriOI GRGCYC 4 cut(s) 252, 264, 318, 683
Fsp4HI GCNGC 5 cut(s) 183, 186, 351, 405, 457
GluI GCNGC 5 cut(s) 183, 186, 351, 405, 457
GsuI CTGGAG 1 cut(s) 674
HaeIII GGCC 2 cut(s) 517, 681
HapII CCGG 6 cut(s) 206, 234, 401, 522, 542, 683
HgaI GACGC 2 cut(s) 427, 453
Hin1I GRCGYC 2 cut(s) 419, 464
Hin1II CATG 5 cut(s) 178, 310, 587, 629, 702
HinfI GANTC 4 cut(s) 164, 209, 274, 476
HpaII CCGG 6 cut(s) 206, 234, 401, 522, 542, 683
HphI GGTGA 2 cut(s) 390, 502
Hpy166II GTNNAC 3 cut(s) 31, 226, 688
Hpy188I TCNGA 6 cut(s) 163, 169, 379, 417, 475, 707
Hpy188III TCNNGA 2 cut(s) 245, 436
Hpy8I GTNNAC 3 cut(s) 31, 226, 688
Hpy99I CGWCG 3 cut(s) 421, 427, 469
HpyAV CCTTC 1 cut(s) 595
HpyCH4III ACNGT 1 cut(s) 490
HpyCH4IV ACGT 4 cut(s) 33, 42, 69, 674
HpyCH4V TGCA 3 cut(s) 310, 384, 629
HpyF10VI GCNNNNNNNGC 3 cut(s) 350, 456, 678
HpyF3I CTNAG 2 cut(s) 246, 251
HpySE526I ACGT 4 cut(s) 33, 42, 69, 674
Hsp92I GRCGYC 2 cut(s) 419, 464
Hsp92II CATG 5 cut(s) 178, 310, 587, 629, 702
Ksp22I TGATCA 1 cut(s) 622
Kzo9I GATC 3 cut(s) 536, 622, 694
LguI GCTCTTC 1 cut(s) 440
Lsp1109I GCAGC 3 cut(s) 172, 194, 443
LweI GCATC 1 cut(s) 491
MaeII ACGT 4 cut(s) 33, 42, 69, 674
MaeIII GTNAC 2 cut(s) 65, 254
MalI GATC 3 cut(s) 538, 624, 696
MboI GATC 3 cut(s) 536, 622, 694
MboII GAAGA 3 cut(s) 299, 387, 457
MhlI GDGCHC 6 cut(s) 252, 264, 318, 435, 674, 683
MluCI AATT 1 cut(s) 7
MlyI GAGTC 3 cut(s) 173, 218, 470
MmeI TCCRAC 3 cut(s) 192, 440, 478
MseI TTAA 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 6 cut(s) 206, 234, 401, 522, 542, 683
MspR9I CCNGG 1 cut(s) 683
Mva1269I GAATGC 1 cut(s) 572
MwoI GCNNNNNNNGC 3 cut(s) 350, 456, 678
NciI CCSGG 1 cut(s) 683
NcoI CCATGG 1 cut(s) 698
NdeII GATC 3 cut(s) 536, 622, 694
NlaIII CATG 5 cut(s) 178, 310, 587, 629, 702
NlaIV GGNNCC 3 cut(s) 516, 680, 681
NmuCI GTSAC 2 cut(s) 65, 254
PciSI GCTCTTC 1 cut(s) 440
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PctI GAATGC 1 cut(s) 572
PfeI GAWTC 1 cut(s) 274
PflFI GACNNNGTC 1 cut(s) 421
PkrI GCNGC 5 cut(s) 184, 187, 352, 406, 458
PleI GAGTC 3 cut(s) 172, 217, 470
PmaCI CACGTG 2 cut(s) 70, 675
PmlI CACGTG 2 cut(s) 70, 675
PpsI GAGTC 3 cut(s) 172, 217, 470
Ppu21I YACGTR 3 cut(s) 43, 70, 675
PshBI ATTAAT 1 cut(s) 6
PsiI TTATAA 1 cut(s) 90
Psp124BI GAGCTC 3 cut(s) 252, 264, 318
PspCI CACGTG 2 cut(s) 70, 675
PspN4I GGNNCC 3 cut(s) 516, 680, 681
PspOMI GGGCCC 1 cut(s) 679
PspPI GGNCC 3 cut(s) 515, 679, 680
PstNI CAGNNNCTG 1 cut(s) 55
PsyI GACNNNGTC 1 cut(s) 421
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 1 cut(s) 580
RsaNI GTAC 1 cut(s) 579
SacI GAGCTC 3 cut(s) 252, 264, 318
SapI GCTCTTC 1 cut(s) 440
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 5 cut(s) 183, 186, 351, 405, 457
Sau3AI GATC 3 cut(s) 536, 622, 694
Sau96I GGNCC 3 cut(s) 515, 679, 680
ScaI AGTACT 1 cut(s) 580
SchI GAGTC 3 cut(s) 173, 218, 470
ScrFI CCNGG 1 cut(s) 683
SduI GDGCHC 6 cut(s) 252, 264, 318, 435, 674, 683
SfaNI GCATC 1 cut(s) 491
SfcI CTRYAG 1 cut(s) 366
SgrAI CRCCGGYG 1 cut(s) 400
Sse9I AATT 1 cut(s) 7
SstI GAGCTC 3 cut(s) 252, 264, 318
StyD4I CCNGG 1 cut(s) 681
StyI CCWWGG 1 cut(s) 698
TaaI ACNGT 1 cut(s) 490
TaiI ACGT 4 cut(s) 36, 45, 72, 677
TasI AATT 1 cut(s) 7
TatI WGTACW 1 cut(s) 578
TauI GCSGC 2 cut(s) 353, 407
TfiI GAWTC 1 cut(s) 274
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 2 cut(s) 65, 254
TseI GCWGC 3 cut(s) 182, 185, 456
Tsp45I GTSAC 2 cut(s) 65, 254
TspDTI ATGAA 1 cut(s) 660
TspGWI ACGGA 1 cut(s) 211
TspRI CASTG 1 cut(s) 259
Tth111I GACNNNGTC 1 cut(s) 421
VspI ATTAAT 1 cut(s) 6
XmiI GTMKAC 2 cut(s) 225, 687
ZrmI AGTACT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.