Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0009577

Physical Location & Seq

Genomic Coordinates Forward (+)

5057703 .. 5067530

Gene Structure 9828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g06490.19

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3045 bp

ATGGCGAATAACCCTCAGTCCTCAGCTGGGCAGCCATTTCGTCCTCCCCAAGTTGCTTCCATGGGTCCTCAAAGTTTTGGTTCATCCCCTCTTCAATACCGACCAGTGGTTCCAACACAGCAAGGACAGCAATTTATTCCACCAGCTTCCCAACAATTTCAGCCTGTGGGACAAGGTATTCCTTCTCCAAATGTTGGGATGCCTGGTAGTCAAAGTCAGCAATTACAATATTCTCAACCAATGCAACCGTATCCTCTCAGGCCAAGTCAACCTGGTCATGCTCATTCATCACAGGCGTTGCCTATGCAATACATGCAGACAAGGCCTACTGTCCCATCTCAGTCTCAGCAACCTGTCCCACCTTTTAATAATCAGATGCCTGGAATGCCTTATTCTTCCTCATATATGTTTGCTCCGCCTACGTATGTCCAGCAACAAAATAATGTCAGTTCACAATTTCAGCCGATGTCTCAAGTGCAAGCACACATTTTATCTGCCACAGGACAGCCTTGGGTGTCCTCTGGTAATCAGGGTGCAGCAGTTCCTTCACCAGTACAGCAGCCTGGCCAACAATCTTCAAGCACTCCTTCCACAGATTCTGCTGTAAGTGTTCCTAGCCAAGTACAGCAGTCTTCTTCGGATTGGCAGGAGCATATGGCTGCTGATGGAAGAAGATATTATTTCAACAGAAGAACAAGAGAATCTAATTGGGAGAAGCCTTTAGAGTTGATGACACCGATGGAGAGGGCCGATGCATCAACTGTTTGGAAGGAGTATACGTCTGCAGATGGGAAAAAGTATTATTACAACAAGGTTACAAGGGAGTCTAAGTGGACAATTCCAGAGGAGTTAAAGTTGGCTCGCGAACAGGCTCAAAGAGAACTAATCCAAGGAACACATTCAGAAATGAATTTGACTTCTCATACTCCTCCTGCTGTTGCTTCAGCTGAAACACCTTTGGGAACTAGTTCAGTTGGCCCCAGTACTTCTTCAGCCCTACCTGGGATGGTCCCGAGCCCTGTTGCAGTTACACCTGTGTCTTCTTTTTCTAATCCTTCTCCTACCGCACCTACTGGATCATCAGTTGCTTCTGGTGCACAGTCTTCCATAACAGGTGCTGTTGGCATTCAACCTCCTGCAGTAACTGTGACTCCACTGCCTGCTTCTGTTTCAGGGAGTACCGGAGTTCCTCCTACTTCGGTCAACACCACTACAAACTCAGTGAGTACTTATGAAACTGTAGCATCTCAAGATATTGCAAGTTCAGCTGATGGAACTTTGACTCAAGATATCGAGGAAGCCAAAAGAGGTATGGCAGTTGCTGGAAAAGTCAATGTGACTCCTTCAGAGGAGAAAACATTTGATGACGAACCACTGGTGTATGCCAATAAGCAGGAGGCAAAAACTGCTTTCAAATCACTTCTGGAATCTGCAAATGTCCAATCTGATTGGACTTGGGAGCAGACAATGAGGGAGATCATTAATGACAAAAGATACGGCGGTTTAAAAACTCTAGGTGAGAGGAAGCAAGCATTTAATGAGTACTTGGGTCAAAGGAAAAAACTGGAGAATGAAGAGAGGCGCATGAGGCAGAAAAAAGCTCGGGAAGAATTCACAAAAATGTTGGAAGAGTCCAGGGAACTTACATCAGCAACCAGATGGAGCAAAGCTGTGAGTATGTTTGAAAATGATGAACGATTCAAAGCTGTAGAACGAGCTAGAGACCGGGAAGATCTTTATGAGAGCTACATTGTAGAACTCGAAAGGAAGGAAAAACAAAGGGCAGCTGAAGAGCATAAGCAGAATATTGTAGAGTACAGGAAATTTCTGGAATCTTGTGACTTTATCAAGGTGAACAGCCAGTGGCGGAAAGTTCAAGATCGCTTGGAGGATGACGAGAGATGCTTTCGCCTTGAAAAGCTTGTTAGATTGCTCATTTTCCAGGACTATATTCGTGACCTTGAGAAGGTGGAAGAGGAGCAAAAAAAGTTACAGAAGGAACAATTGAGGCGGGAAGAGAGGAAAAACCGCGATGAGTTCCGCAAGCTATTGGAAGAACATGTTGCTGATGGCACTCTTACAGCTAAAACTCTCTGGCGCGATTACTGTACGAAGGTTAAGGACTTGCCTCCATATGAAGCTGTTGCATTGAACGCCTCTGGTTCAACACCAAAAGAATTGTTTGATGACGTTTTTGAAGAATTAGAGAAACAGTATCATGACGATAAAGCTCGGATAAAGGATGCAATGAAGTCAGGGAAGGTTACCATGACTTCCACATTGGCATTTGAAGAGTTTAAGGTTCCTATTCTGGAAGATATTGGTTCCCCACCAATATCAGACATTAACTTCAAGCTTGTGTATGAGGAATTATTAGAGAGAGCCAAGGAGAAGGAGGAGAAAGAGGCAAAGAAGCGTCAACGACATGTTGATGACTTCAATAACCTATTGCACACAATCAAGGAAATAACTGCTGCTTCTAATTGGGAAGATAGCAAACACCTTTTTGAAGAAACCCAAGAATACAGATCAATTGGTGATGGTAGGGAAGTTTTTGAGGAATATATTACAAGCTTACAGGAGAGGGCTAAAGAGAAGGAACGAAAGCGTGAGGAGGAAAAGGCCAAAAAAGAGAAAGAAAGAGAAGAGAAAGAGAAGCGGAAGGATAAAGAGAGAAAGGAGAAGGAAAGAGAACGTGAAAAAGAAAAGGGAAAGGACCGATCTAAGAAGGATGAAACAGATAGTGAAAATGTAGACATAACTGATAGTCATGGGCATAAAGAAGATAAGAAGAGGGAGAAAGACAAAGACAGAAAGCACCGGAAGCGGCATCAAAGTTCCATTGATGATGTAGGTTCCGATAAGGAGGAGAAAGAGGAGTCTAAGAAACACAGACATAGTAGTGACCGCAAAAGATCAAGGAAACATACACCTGAATCTGACAGTGAAAGTCGTCATAGAAGGCATAAGAGAGAGCATCGTCGAAGTGGTGAACATGTCGACCTTGAAGATGGGGAGCTTGGTGAAGATGGGGAAATTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006928 GO:0006996 GO:0007010 GO:0008150 GO:0008152 GO:0008360 GO:0008380 GO:0009987 GO:0010467 GO:0010564 GO:0016043 GO:0016070 GO:0016071 GO:0016363 GO:0016477 GO:0016592 GO:0016604 GO:0016607 GO:0022603 GO:0022604 GO:0030532 GO:0031974 GO:0031981 GO:0032465 GO:0032991 GO:0034399 GO:0034641 GO:0040011 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051302 GO:0051674 GO:0051726 GO:0065007 GO:0065008 GO:0070013 GO:0070064 GO:0071004 GO:0071010 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

FF WW

Protein Analysis

1015

Amino Acids

115.78

Weight (kDa)

6.37

Isoelectric Point (pI)

60.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44910 AT1G44910
fragaria_vesca	FvH4_2g32680 FvH4_2g32680 FvH4_2g32680 FvH4_2g32680
malus_domestica	MD08G1078500.v1.1 MD15G1065300.v1.1
prunus_persica	Prupe.1G419400_v2.0.a1
pyrus_communis	pycom08g06490 pycom15g06180
rosa_chinensis	RchiOBHm_Chr6g0309991
rosa_laevigata	RLG00000010518
rosa_multiflora	Rmu_sc0000294.1_g000011
rosa_roxburghii	Rroxscaffold_7G00158970
rosa_rugosa	Rorug06G0376700 Rorug06G0376800
rosa_samantha	Rh6AG490400 Rh6BG499900 Rh6CG504800 Rh6DG490800
rosa_wichuraiana	Rw6G042690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	194
AccI	GTMKAC	3 cut(s)	776, 2754, 3000
AccII	CGCG	3 cut(s)	864, 2031, 2100
AclWI	GGATC	1 cut(s)	1084
AcoI	YGGCCR	1 cut(s)	565
AcsI	RAATTY	3 cut(s)	910, 1610, 1823
AcuI	CTGAAG	4 cut(s)	927, 975, 1329, 1809
AfaI	GTAC	8 cut(s)	555, 624, 985, 1180, 1228, 1544, 1817, 2110
AfiI	CCNNNNNNNGG	5 cut(s)	27, 106, 194, 1002, 1966
AflIII	ACRYGT	3 cut(s)	2059, 2425, 2995
AhlI	ACTAGT	1 cut(s)	965
AjnI	CCWGG	7 cut(s)	202, 271, 379, 562, 1000, 1634, 1941
Alw21I	GWGCWC	1 cut(s)	1099
Alw26I	GTCTC	3 cut(s)	348, 474, 1716
Alw44I	GTGCAC	1 cut(s)	1095
AlwI	GGATC	1 cut(s)	1084
AlwNI	CAGNNNCTG	4 cut(s)	599, 1118, 1145, 1322
Ama87I	CYCGRG	2 cut(s)	1012, 1602
AoxI	GGCC	6 cut(s)	260, 323, 565, 747, 976, 2622
ApaLI	GTGCAC	1 cut(s)	1095
ApeKI	GCWGC	6 cut(s)	31, 536, 559, 659, 1784, 2474
ApoI	RAATTY	3 cut(s)	910, 1610, 1823
AseI	ATTAAT	1 cut(s)	1482
Asp700I	GAANNNNTTC	2 cut(s)	898, 967
AspLEI	GCGC	2 cut(s)	1584, 2100
AspS9I	GGNCC	5 cut(s)	65, 747, 977, 1009, 2716
AsuC2I	CCSGG	1 cut(s)	1727
AsuHPI	GGTGA	6 cut(s)	540, 1529, 1864, 2549, 3002, 3035
AvaI	CYCGRG	2 cut(s)	1012, 1602
AvaII	GGWCC	3 cut(s)	65, 1009, 2716
BaeGI	GKGCMC	1 cut(s)	1099
BaeI	ACNNNNGTAYC	2 cut(s)	1486, 1519
BalI	TGGCCA	1 cut(s)	567
BanII	GRGCYC	1 cut(s)	1019
BbsI	GAAGAC	3 cut(s)	624, 1032, 1095
Bbv12I	GWGCWC	1 cut(s)	1099
BbvCI	CCTCAGC	1 cut(s)	22
BbvI	GCAGC	6 cut(s)	43, 548, 571, 646, 1796, 2461
BceAI	ACGGC	1 cut(s)	1513
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	7 cut(s)	204, 273, 381, 564, 1002, 1636, 1943
BciVI	GTATCC	1 cut(s)	261
BcnI	CCSGG	1 cut(s)	1727
BcoDI	GTCTC	3 cut(s)	348, 474, 1716
BcuI	ACTAGT	1 cut(s)	965
BfaI	CTAG	4 cut(s)	615, 966, 1514, 1719
BfmI	CTRYAG	4 cut(s)	783, 1137, 1239, 1707
BfuI	GTATCC	1 cut(s)	261
BglII	AGATCT	1 cut(s)	1732
BisI	GCNGC	7 cut(s)	32, 537, 560, 660, 1785, 2475, 2828
BlsI	GCNGC	7 cut(s)	33, 538, 561, 661, 1786, 2476, 2829
BmcAI	AGTACT	3 cut(s)	985, 1228, 1544
Bme1390I	CCNGG	8 cut(s)	204, 273, 381, 564, 1002, 1636, 1727, 1943
Bme18I	GGWCC	3 cut(s)	65, 1009, 2716
BmeT110I	CYCGRG	2 cut(s)	1012, 1602
BmgT120I	GGNCC	5 cut(s)	65, 747, 977, 1009, 2716
BmiI	GGNNCC	7 cut(s)	66, 111, 979, 1011, 2304, 2326, 2857
BmrFI	CCNGG	8 cut(s)	204, 273, 381, 564, 1002, 1636, 1727, 1943
BmrI	ACTGGG	1 cut(s)	975
BmsI	GCATC	9 cut(s)	189, 366, 742, 764, 1253, 1892, 2233, 2839, 2986
BmuI	ACTGGG	1 cut(s)	975
BpiI	GAAGAC	3 cut(s)	624, 1032, 1095
BpmI	CTGGAG	1 cut(s)	1586
Bpu10I	CCTNAGC	1 cut(s)	22
BpuEI	CTTGAG	4 cut(s)	456, 1233, 1269, 1982
BpuMI	CCSGG	1 cut(s)	1727
BsaAI	YACGTR	1 cut(s)	423
BsaI	GGTCTC	1 cut(s)	1716
BsaJI	CCNNGG	6 cut(s)	60, 509, 889, 1001, 1635, 2385
BsaWI	WCCGGW	2 cut(s)	1181, 2820
BsaXI	ACNNNNNCTCC	8 cut(s)	764, 794, 815, 839, 845, 869, 1135, 1165
Bsc4I	CCNNNNNNNGG	5 cut(s)	27, 106, 194, 1002, 1966
Bse1I	ACTGG	7 cut(s)	104, 551, 981, 1078, 1380, 1569, 1861
Bse3DI	GCAATG	1 cut(s)	2253
BseBI	CCWGG	7 cut(s)	204, 273, 381, 564, 1002, 1636, 1943
BseDI	CCNNGG	6 cut(s)	60, 509, 889, 1001, 1635, 2385
BseGI	GGATG	6 cut(s)	83, 204, 1011, 1897, 2248, 2737
BseLI	CCNNNNNNNGG	5 cut(s)	27, 106, 194, 1002, 1966
BseMI	GCAATG	1 cut(s)	2253
BseMII	CTCAG	6 cut(s)	29, 36, 271, 353, 359, 1233
BseNI	ACTGG	7 cut(s)	104, 551, 981, 1078, 1380, 1569, 1861
BseRI	GAGGAG	8 cut(s)	860, 918, 1364, 1991, 2411, 2627, 2882, 2891
BseSI	GKGCMC	1 cut(s)	1099
BseXI	GCAGC	6 cut(s)	43, 548, 571, 646, 1796, 2461
BseYI	CCCAGC	1 cut(s)	26
BsgI	GTGCAG	1 cut(s)	555
Bsh1236I	CGCG	3 cut(s)	864, 2031, 2100
BshFI	GGCC	6 cut(s)	262, 325, 567, 749, 978, 2624
BsiHKAI	GWGCWC	1 cut(s)	1099
BsiHKCI	CYCGRG	2 cut(s)	1012, 1602
BsiSI	CCGG	3 cut(s)	1182, 1726, 2821
BslFI	GGGAC	4 cut(s)	183, 317, 341, 995
BslI	CCNNNNNNNGG	5 cut(s)	27, 106, 194, 1002, 1966
BsmAI	GTCTC	3 cut(s)	348, 474, 1716
BsmFI	GGGAC	4 cut(s)	183, 317, 341, 995
BsmI	GAATGC	2 cut(s)	390, 1125
BsnI	GGCC	6 cut(s)	262, 325, 567, 749, 978, 2624
Bso31I	GGTCTC	1 cut(s)	1716
BsoBI	CYCGRG	2 cut(s)	1012, 1602
Bsp1286I	GDGCHC	2 cut(s)	1019, 1099
Bsp143I	GATC	7 cut(s)	1076, 1476, 1732, 1879, 2528, 2720, 2915
Bsp19I	CCATGG	1 cut(s)	60
Bsp68I	TCGCGA	1 cut(s)	864
BspANI	GGCC	6 cut(s)	262, 325, 567, 749, 978, 2624
BspCNI	CTCAG	6 cut(s)	28, 35, 270, 352, 358, 1232
BspFNI	CGCG	3 cut(s)	864, 2031, 2100
BspHI	TCATGA	1 cut(s)	2218
BspLI	GGNNCC	7 cut(s)	66, 111, 979, 1011, 2304, 2326, 2857
BspMAI	CTGCAG	2 cut(s)	787, 1141
BspPI	GGATC	1 cut(s)	1084
BspQI	GCTCTTC	1 cut(s)	1785
BspTNI	GGTCTC	1 cut(s)	1716
BsrDI	GCAATG	1 cut(s)	2253
BsrI	ACTGG	7 cut(s)	104, 551, 981, 1078, 1380, 1569, 1861
BssECI	CCNNGG	6 cut(s)	60, 509, 889, 1001, 1635, 2385
BssMI	GATC	7 cut(s)	1076, 1476, 1732, 1879, 2528, 2720, 2915
BssNAI	GTATAC	1 cut(s)	777
BssT1I	CCWWGG	4 cut(s)	60, 509, 889, 2385
Bst1107I	GTATAC	1 cut(s)	777
Bst2UI	CCWGG	7 cut(s)	204, 273, 381, 564, 1002, 1636, 1943
Bst4CI	ACNGT	9 cut(s)	249, 331, 763, 1101, 1147, 1240, 2108, 2214, 2945
Bst6I	CTCTTC	9 cut(s)	96, 1569, 1623, 1785, 1968, 2010, 2286, 2640, 2786
BstAPI	GCANNNNNTGC	2 cut(s)	313, 1406
BstBAI	YACGTR	1 cut(s)	423
BstC8I	GCNNGC	5 cut(s)	480, 862, 1161, 1530, 2045
BstDEI	CTNAG	9 cut(s)	15, 22, 257, 339, 345, 828, 1219, 2724, 2883
BstDSI	CCRYGG	1 cut(s)	60
BstEII	GGTNACC	1 cut(s)	2263
BstENI	CCTNNNNNAGG	1 cut(s)	1964
BstF5I	GGATG	6 cut(s)	83, 204, 1011, 1897, 2248, 2737
BstFNI	CGCG	3 cut(s)	864, 2031, 2100
BstHHI	GCGC	2 cut(s)	1584, 2100
BstKTI	GATC	7 cut(s)	1079, 1479, 1735, 1882, 2531, 2723, 2918
BstMAI	GTCTC	3 cut(s)	348, 474, 1716
BstMBI	GATC	7 cut(s)	1076, 1476, 1732, 1879, 2528, 2720, 2915
BstNI	CCWGG	7 cut(s)	204, 273, 381, 564, 1002, 1636, 1943
BstNSI	RCATGY	4 cut(s)	316, 2063, 2429, 2999
BstPI	GGTNACC	1 cut(s)	2263
BstSCI	CCNGG	8 cut(s)	202, 271, 379, 562, 1000, 1634, 1725, 1941
BstSFI	CTRYAG	4 cut(s)	783, 1137, 1239, 1707
BstSLI	GKGCMC	1 cut(s)	1099
BstSNI	TACGTA	1 cut(s)	423
BstUI	CGCG	3 cut(s)	864, 2031, 2100
BstV1I	GCAGC	6 cut(s)	43, 548, 571, 646, 1796, 2461
BstV2I	GAAGAC	3 cut(s)	624, 1032, 1095
BstX2I	RGATCY	1 cut(s)	1732
BstYI	RGATCY	1 cut(s)	1732
BstZ17I	GTATAC	1 cut(s)	777
BsuI	GTATCC	1 cut(s)	261
BsuRI	GGCC	6 cut(s)	262, 325, 567, 749, 978, 2624
BtgI	CCRYGG	1 cut(s)	60
BtgZI	GCGATG	1 cut(s)	2046
BtsCI	GGATG	6 cut(s)	83, 204, 1011, 1897, 2248, 2737
BtsI	GCAGTG	1 cut(s)	1154
BtsIMutI	CAGTG	6 cut(s)	111, 1154, 1227, 1373, 1868, 2950
BtuMI	TCGCGA	1 cut(s)	864
Cac8I	GCNNGC	5 cut(s)	480, 862, 1161, 1530, 2045
CaiI	CAGNNNCTG	4 cut(s)	599, 1118, 1145, 1322
CciI	TCATGA	1 cut(s)	2218
CfoI	GCGC	2 cut(s)	1584, 2100
Cfr13I	GGNCC	5 cut(s)	65, 747, 977, 1009, 2716
CseI	GACGC	1 cut(s)	2405
CsiI	ACCWGGT	1 cut(s)	271
Csp6I	GTAC	8 cut(s)	554, 623, 984, 1179, 1227, 1543, 1816, 2109
CviQI	GTAC	8 cut(s)	554, 623, 984, 1179, 1227, 1543, 1816, 2109
DdeI	CTNAG	9 cut(s)	15, 22, 257, 339, 345, 828, 1219, 2724, 2883
DpnI	GATC	7 cut(s)	1078, 1478, 1734, 1881, 2530, 2722, 2917
DpnII	GATC	7 cut(s)	1076, 1476, 1732, 1879, 2528, 2720, 2915
DraI	TTTAAA	1 cut(s)	1506
EaeI	YGGCCR	1 cut(s)	565
Eam1104I	CTCTTC	9 cut(s)	96, 1569, 1623, 1785, 1968, 2010, 2286, 2640, 2786
EarI	CTCTTC	9 cut(s)	96, 1569, 1623, 1785, 1968, 2010, 2286, 2640, 2786
EciI	GGCGGA	2 cut(s)	405, 1882
Eco105I	TACGTA	1 cut(s)	423
Eco130I	CCWWGG	4 cut(s)	60, 509, 889, 2385
Eco147I	AGGCCT	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	1019
Eco31I	GGTCTC	1 cut(s)	1716
Eco32I	GATATC	1 cut(s)	1291
Eco47I	GGWCC	3 cut(s)	65, 1009, 2716
Eco57I	CTGAAG	4 cut(s)	927, 975, 1329, 1809
Eco88I	CYCGRG	2 cut(s)	1012, 1602
Eco91I	GGTNACC	1 cut(s)	2263
EcoNI	CCTNNNNNAGG	1 cut(s)	1964
EcoO109I	RGGNCCY	1 cut(s)	65
EcoO65I	GGTNACC	1 cut(s)	2263
EcoRI	GAATTC	1 cut(s)	1610
EcoRII	CCWGG	7 cut(s)	202, 271, 379, 562, 1000, 1634, 1941
EcoRV	GATATC	1 cut(s)	1291
EcoT14I	CCWWGG	4 cut(s)	60, 509, 889, 2385
EcoT22I	ATGCAT	1 cut(s)	757
EcoT38I	GRGCYC	1 cut(s)	1019
ErhI	CCWWGG	4 cut(s)	60, 509, 889, 2385
FalI	AAGNNNNNCTT	2 cut(s)	571, 603
FaqI	GGGAC	4 cut(s)	183, 317, 341, 995
FauI	CCCGC	1 cut(s)	2004
FauNDI	CATATG	2 cut(s)	654, 2134
FblI	GTMKAC	3 cut(s)	776, 2754, 3000
Fnu4HI	GCNGC	7 cut(s)	32, 537, 560, 660, 1785, 2475, 2828
FokI	GGATG	6 cut(s)	70, 211, 1018, 1904, 2255, 2744
FriOI	GRGCYC	1 cut(s)	1019
Fsp4HI	GCNGC	7 cut(s)	32, 537, 560, 660, 1785, 2475, 2828
FspBI	CTAG	4 cut(s)	615, 966, 1514, 1719
GlaI	GCGC	2 cut(s)	1583, 2099
GluI	GCNGC	7 cut(s)	32, 537, 560, 660, 1785, 2475, 2828
GsaI	CCCAGC	1 cut(s)	30
GsuI	CTGGAG	1 cut(s)	1586
HaeIII	GGCC	6 cut(s)	262, 325, 567, 749, 978, 2624
HapII	CCGG	3 cut(s)	1182, 1726, 2821
HgaI	GACGC	1 cut(s)	2405
HhaI	GCGC	2 cut(s)	1584, 2100
Hin6I	GCGC	2 cut(s)	1582, 2098
HinP1I	GCGC	2 cut(s)	1582, 2098
HincII	GTYRAC	4 cut(s)	269, 1204, 2420, 3001
HindII	GTYRAC	4 cut(s)	269, 1204, 2420, 3001
HindIII	AAGCTT	3 cut(s)	1919, 2354, 2572
HpaII	CCGG	3 cut(s)	1182, 1726, 2821
HphI	GGTGA	6 cut(s)	540, 1529, 1864, 2549, 3002, 3035
Hpy188I	TCNGA	9 cut(s)	375, 640, 904, 1348, 1447, 2235, 2341, 2860, 2941
Hpy99I	CGWCG	1 cut(s)	2985
HpyCH4III	ACNGT	9 cut(s)	249, 331, 763, 1101, 1147, 1240, 2108, 2214, 2945
HpyCH4IV	ACGT	4 cut(s)	422, 779, 2190, 2695
HpyF3I	CTNAG	9 cut(s)	15, 22, 257, 339, 345, 828, 1219, 2724, 2883
HpySE526I	ACGT	4 cut(s)	422, 779, 2190, 2695
HspAI	GCGC	2 cut(s)	1582, 2098
Kzo9I	GATC	7 cut(s)	1076, 1476, 1732, 1879, 2528, 2720, 2915
LguI	GCTCTTC	1 cut(s)	1785
LmnI	GCTCC	6 cut(s)	418, 649, 1459, 1662, 1978, 3016
Lsp1109I	GCAGC	6 cut(s)	43, 548, 571, 646, 1796, 2461
LweI	GCATC	9 cut(s)	189, 366, 742, 764, 1253, 1892, 2233, 2839, 2986
MabI	ACCWGGT	1 cut(s)	271
MaeI	CTAG	4 cut(s)	615, 966, 1514, 1719
MaeII	ACGT	4 cut(s)	422, 779, 2190, 2695
MalI	GATC	7 cut(s)	1078, 1478, 1734, 1881, 2530, 2722, 2917
MboI	GATC	7 cut(s)	1076, 1476, 1732, 1879, 2528, 2720, 2915
MfeI	CAATTG	2 cut(s)	2003, 2532
MflI	RGATCY	1 cut(s)	1732
MhlI	GDGCHC	2 cut(s)	1019, 1099
MlsI	TGGCCA	1 cut(s)	567
MluNI	TGGCCA	1 cut(s)	567
MlyI	GAGTC	6 cut(s)	833, 1144, 1276, 1333, 1640, 2888
MmeI	TCCRAC	2 cut(s)	137, 1605
Mox20I	TGGCCA	1 cut(s)	567
Mph1103I	ATGCAT	1 cut(s)	757
MroXI	GAANNNNTTC	2 cut(s)	898, 967
MscI	TGGCCA	1 cut(s)	567
MseI	TTAA	9 cut(s)	366, 851, 1482, 1505, 1536, 2118, 2298, 2346, 3039
MslI	CAYNNNNRTG	3 cut(s)	1619, 2430, 2901
Msp20I	TGGCCA	1 cut(s)	567
MspA1I	CMGCKG	4 cut(s)	26, 947, 1268, 1787
MspI	CCGG	3 cut(s)	1182, 1726, 2821
MspR9I	CCNGG	8 cut(s)	204, 273, 381, 564, 1002, 1636, 1727, 1943
MunI	CAATTG	2 cut(s)	2003, 2532
Mva1269I	GAATGC	2 cut(s)	390, 1125
MvaI	CCWGG	7 cut(s)	204, 273, 381, 564, 1002, 1636, 1943
MvnI	CGCG	3 cut(s)	864, 2031, 2100
NciI	CCSGG	1 cut(s)	1727
NcoI	CCATGG	1 cut(s)	60
NdeI	CATATG	2 cut(s)	654, 2134
NdeII	GATC	7 cut(s)	1076, 1476, 1732, 1879, 2528, 2720, 2915
NlaIV	GGNNCC	7 cut(s)	66, 111, 979, 1011, 2304, 2326, 2857
NmuCI	GTSAC	5 cut(s)	1147, 1336, 1838, 1955, 2903
NruI	TCGCGA	1 cut(s)	864
NsiI	ATGCAT	1 cut(s)	757
NspI	RCATGY	4 cut(s)	316, 2063, 2429, 2999
PagI	TCATGA	1 cut(s)	2218
PceI	AGGCCT	1 cut(s)	325
PciI	ACATGT	3 cut(s)	2059, 2425, 2995
PciSI	GCTCTTC	1 cut(s)	1785
PctI	GAATGC	2 cut(s)	390, 1125
PdmI	GAANNNNTTC	2 cut(s)	898, 967
PfeI	GAWTC	6 cut(s)	596, 701, 1427, 1698, 1832, 2936
PflMI	CCANNNNNTGG	1 cut(s)	194
PfoI	TCCNGGA	1 cut(s)	1941
PkrI	GCNGC	7 cut(s)	33, 538, 561, 661, 1786, 2476, 2829
PleI	GAGTC	6 cut(s)	832, 1144, 1276, 1333, 1639, 2887
PpsI	GAGTC	6 cut(s)	832, 1144, 1276, 1333, 1639, 2887
Ppu21I	YACGTR	1 cut(s)	423
PpuMI	RGGWCCY	1 cut(s)	65
PscI	ACATGT	3 cut(s)	2059, 2425, 2995
PshBI	ATTAAT	1 cut(s)	1482
Psp5II	RGGWCCY	1 cut(s)	65
Psp6I	CCWGG	7 cut(s)	202, 271, 379, 562, 1000, 1634, 1941
PspEI	GGTNACC	1 cut(s)	2263
PspFI	CCCAGC	1 cut(s)	26
PspGI	CCWGG	7 cut(s)	202, 271, 379, 562, 1000, 1634, 1941
PspN4I	GGNNCC	7 cut(s)	66, 111, 979, 1011, 2304, 2326, 2857
PspPI	GGNCC	5 cut(s)	65, 747, 977, 1009, 2716
PspPPI	RGGWCCY	1 cut(s)	65
PstI	CTGCAG	2 cut(s)	787, 1141
PstNI	CAGNNNCTG	4 cut(s)	599, 1118, 1145, 1322
PsuI	RGATCY	1 cut(s)	1732
PvuII	CAGCTG	4 cut(s)	26, 947, 1268, 1787
RruI	TCGCGA	1 cut(s)	864
RsaI	GTAC	8 cut(s)	555, 624, 985, 1180, 1228, 1544, 1817, 2110
RsaNI	GTAC	8 cut(s)	554, 623, 984, 1179, 1227, 1543, 1816, 2109
RseI	CAYNNNNRTG	3 cut(s)	1619, 2430, 2901
SalI	GTCGAC	1 cut(s)	2999
SapI	GCTCTTC	1 cut(s)	1785
SaqAI	TTAA	9 cut(s)	366, 851, 1482, 1505, 1536, 2118, 2298, 2346, 3039
SatI	GCNGC	7 cut(s)	32, 537, 560, 660, 1785, 2475, 2828
Sau3AI	GATC	7 cut(s)	1076, 1476, 1732, 1879, 2528, 2720, 2915
Sau96I	GGNCC	5 cut(s)	65, 747, 977, 1009, 2716
ScaI	AGTACT	3 cut(s)	985, 1228, 1544
SchI	GAGTC	6 cut(s)	833, 1144, 1276, 1333, 1640, 2888
ScrFI	CCNGG	8 cut(s)	204, 273, 381, 564, 1002, 1636, 1727, 1943
SduI	GDGCHC	2 cut(s)	1019, 1099
SexAI	ACCWGGT	1 cut(s)	271
SfaNI	GCATC	9 cut(s)	189, 366, 742, 764, 1253, 1892, 2233, 2839, 2986
SfcI	CTRYAG	4 cut(s)	783, 1137, 1239, 1707
SinI	GGWCC	3 cut(s)	65, 1009, 2716
SmiMI	CAYNNNNRTG	3 cut(s)	1619, 2430, 2901
SmlI	CTYRAG	4 cut(s)	471, 1248, 1284, 1961
SmoI	CTYRAG	4 cut(s)	471, 1248, 1284, 1961
SnaBI	TACGTA	1 cut(s)	423
SpeI	ACTAGT	1 cut(s)	965
SseBI	AGGCCT	1 cut(s)	325
SspI	AATATT	2 cut(s)	230, 1807
SspMI	CTAG	4 cut(s)	615, 966, 1514, 1719
StuI	AGGCCT	1 cut(s)	325
StyD4I	CCNGG	8 cut(s)	202, 271, 379, 562, 1000, 1634, 1725, 1941
StyI	CCWWGG	4 cut(s)	60, 509, 889, 2385
TaaI	ACNGT	9 cut(s)	249, 331, 763, 1101, 1147, 1240, 2108, 2214, 2945
TaiI	ACGT	4 cut(s)	425, 782, 2193, 2698
TaqI	TCGA	4 cut(s)	1293, 1761, 2983, 3000
TaqII	GACCGA	2 cut(s)	1189, 2733
TatI	WGTACW	6 cut(s)	553, 622, 983, 1226, 1542, 1815
TauI	GCSGC	1 cut(s)	2830
TfiI	GAWTC	6 cut(s)	596, 701, 1427, 1698, 1832, 2936
Tru1I	TTAA	9 cut(s)	366, 851, 1482, 1505, 1536, 2118, 2298, 2346, 3039
Tru9I	TTAA	9 cut(s)	366, 851, 1482, 1505, 1536, 2118, 2298, 2346, 3039
TscAI	CASTG	6 cut(s)	111, 1161, 1227, 1380, 1868, 2950
TseFI	GTSAC	5 cut(s)	1147, 1336, 1838, 1955, 2903
TseI	GCWGC	6 cut(s)	31, 536, 559, 659, 1784, 2474
Tsp45I	GTSAC	5 cut(s)	1147, 1336, 1838, 1955, 2903
TspDTI	ATGAA	9 cut(s)	72, 276, 923, 1248, 1587, 1707, 2151, 2264, 2748
TspRI	CASTG	6 cut(s)	111, 1161, 1227, 1380, 1868, 2950
Van91I	CCANNNNNTGG	1 cut(s)	194
VneI	GTGCAC	1 cut(s)	1095
VpaK11BI	GGWCC	3 cut(s)	65, 1009, 2716
VspI	ATTAAT	1 cut(s)	1482
XagI	CCTNNNNNAGG	1 cut(s)	1964
XapI	RAATTY	3 cut(s)	910, 1610, 1823
XceI	RCATGY	4 cut(s)	316, 2063, 2429, 2999
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1309
XmiI	GTMKAC	3 cut(s)	776, 2754, 3000
XmnI	GAANNNNTTC	2 cut(s)	898, 967
XspI	CTAG	4 cut(s)	615, 966, 1514, 1719
ZrmI	AGTACT	3 cut(s)	985, 1228, 1544
Zsp2I	ATGCAT	1 cut(s)	757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.