Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009577

Physical Location & Seq

Genomic Coordinates Forward (+)

2328165 .. 2338410

Gene Structure 10246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010518

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2925 bp

ATGGCAAATAACCCTCAGTCCTCAGCTGCTCAGTATCGACCAATGGTACCGACACCGCAAGGACAACACTTTATTTCATCAGCTCCCCAACAATTTCAGCCTGTGGGACAAGGTCAGCCGTTGCAATATTCTCAACAAATGCAGCCGTATCCTCTCAGGCCAAGTCAGCCTGGTCATGCTCAACCTTCATCACAGGCTTTACCTATGCCATACTATCAGCCAAGGCCAGTTACATCTGTCCCATCACACTCTCAGCAACCTGCCCCACCTTTTAATAATCAGATGCCTGGAATGCCTTATCCTTCATCATATATGTTTCAGCCAATGCCTCAAGAGCAAGCACATGCTGTACCTGCTGCTGGACAACCTTGGATGTCCTCCAGTAATCATCAGGGTGCAGCAGTTGTTACACCACAACAGCAGCCTAGCCAGCAACCTACAAGCACTCCTTTCCCAGATCCTGCTGTAAATGTTCCTAATCTAACACAGCCGTCCGCTTCTGATTGGCAAGAACATATGGCAACTGACGGGAGAAGATATTACTTCAACAGAAGCACTAGACAATCCAGTTGGGAGAAACCTTTAGAATTGATGACTCCACTGGAGAGAGCCGATGCATCAACTGTTTGGAAAGAATATACTTCTGCAGACGGGAAAAAGTATTACTACAACAAGGTTACGAGGGAATCTAAATGGACAATTCCAGAGGAGTTGAAGCTGGCTCGTGAGCAAGCTCAAAGAGAACTTACTCAGGGAACACAATCAGAAACAAATTTGACTCCTCATGCAACTGCTTCAGCTGAAATACATGCTGGAGCTAGTTCAGTTGGGCCCAGCATTTCTTCAGCCCAACCTGGGACAGTCTCGAGTCCAGTTGCAGTTACACCCATCTCTGCCTTCTCTAATCCTTCTCCTATTACGCCGTCGGGATCATTGGTTGCTCCTGGTGTACAGTCTTCCATGGCAACGGGTTCTGTTGGAGTTCAACCTGCCGTGGTGAGTGTGTCCCCACTGCCTGCTTCTAATTTGGGGAGTACCGGAGTTCCTTCTACTTTGGTCAACACCAATACAAAATCAGTAGGTAATGAAAATCAGGCATCTCAAGATATTGCAAGTGCAATTGATGGAGCTTTTACTCAAGATATTGAGGAAGCGAAGAAAGGAATGGCAGTTGCTGGAAAAGTCAACGTGACTCCTTCGGAGGAGAAAGCAATTGATGATGAACCATTGGTGTATGCCAGTAAGCAGGAGGCAAAAAATGCATTCAAATCACTCCTGGAATCCGCAAATGTCCACTCTGATTGGACCTGGGAGCAGGCAATGAGAGAGATCATTAATGACAAAAGATATGGCGCTTTAAGAACACTGGGTGAGCGGAAGCAGGCTTTTAATGAGTACTTGGGCCAAAGGAAAAAGTTGGAGAATGAAGAGAGGCGTATAAGGCAGAAAAGGGCTCGGGAAGAATTTACAAAAATGCTGGAAGAGTCCAAGGAACTCACATCAACAATTAGATGGAGCAAAGCTGTAACTATGTTTGAAAATGATGAACGGTTCAAGGCTGTTGAACGAGCTAGAGATCGGGAAGATCTCTATGAGAGCTACATTGTAGAACTTGAGAGGAAGGAGAAAGAATATGCTGCTGAAGAGCATAGGAGGAATATATCCGAGTACAGGGAATTTCTGGAGTCTTGCGACTTTATTAAGGTGAACAGCCAATGGCGTAAAGTTCAAGATCGCTTAGAGGACGATGAGAGATGCTTGCGTCTTGAAAAGCTTGACCGCTTGCTCATTTTCCAGGACTATATTCGTGACCTTGAGAAGGAGGAAGAGGAGCAAAAGAAGATACAAAAGGAACAATTGAGGCGGATTGAGAGGAAAAACCGGGATGAGTTTCGCAGGCTCCTGGAAGAACATGCTGCTGACGGTACTCTTACAGCTAAAAGTCAATGGCGCGATTACTGTATGAAGGTCAAAGACTTGCCACAGTACGAAGCTGTTGCATTAAACACATCTGGTTCAACACCAAAAGATTTGTTTGAGGATGTTGCTGAAGAATTAGAGAAACAGTTTTTGGAAGATAAAGCACGGGTAAAGGATGCAATGAAGCAAGGGCAGATTGCAATGGTTTCCTCATGGACATTTGAAGAATTTAAGGCTGCTGTTGTGAAAGACATTGGTTCCCCATCAATTCCAGAGCTTAACTTAAAGCTTGCATATGAGGAGATATTAGAGAGAGCCAAGGAGAAGGAGGAAAAAGAAGCAAAGAAGCGTCAACGACTTGCTGATGACTTCACTAAGCTTTTGCACACATTCAAGGAAATAACTGCTTCTTCTAACTGGGAAGATTGCAAACACCTTTTTGAAGAGACCCAAGAATACAGATCAGTTGGGGACGAGAACTCTGGAAAGGAAGTTTTTGAGGAATATATTACAAGTTTACACGAGAAGGCCAAAGAGAAAGAACGGAAGCGTGAGGAGGAAAAGGCGAAAAAGGAGAAGGAAAGAGAGGAGAAAGAGAAGCGGAAGGATAAGGAGAGAAAGGAGAAGGAGAGAGAACGTGAAAAAGAAAAGGGAAAGGAACGATCTAAGAAGGATGAAACAGATAGTGAAAATGTTGACTTAACTGATAGTCATGACCACAAAGAAGATAAGAAAAGGGAGAAAGACAAAGATAGGAAGCATCGGAAGCGGCATCAAAGTTCTATTGATGATGTGGGTTCTGATAAGGATGAGAAAGAGGACTCAAAGAAACACAGACATAGTAGTGACCGCAAAAAATCAAGAAAACGTGCATATACACCTGAATCTGACAGTGAAAATCGACACAGAAGACATAAGAGAGAACATCGAGATGGTTCCCGCAGAAATGGTGGATATGAGGAACTTGAAGATGGAGAGGTTGGTGAAGATGGGGAAATTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006928 GO:0006996 GO:0007010 GO:0008150 GO:0008152 GO:0008360 GO:0008380 GO:0009987 GO:0010467 GO:0010564 GO:0016043 GO:0016070 GO:0016071 GO:0016363 GO:0016477 GO:0016592 GO:0016604 GO:0016607 GO:0022603 GO:0022604 GO:0030532 GO:0031974 GO:0031981 GO:0032465 GO:0032991 GO:0034399 GO:0034641 GO:0040011 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051302 GO:0051674 GO:0051726 GO:0065007 GO:0065008 GO:0070013 GO:0070064 GO:0071004 GO:0071010 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

FF WW

Protein Analysis

975

Amino Acids

111.79

Weight (kDa)

6.09

Isoelectric Point (pI)

57.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WW	PF00397	167 - 194	1.7e-09	WW domain
WW	PF00397	210 - 235	1.1e-07	WW domain
FF	PF01846	417 - 466	6.1e-17	FF domain
FF	PF01846	484 - 534	7.9e-13	FF domain
FF	PF01846	626 - 681	2.2e-08	FF domain
FF_PRPF40A	PF25432	689 - 748	8.3e-20	PRPF40A-like, FF domain
FF	PF01846	762 - 809	2.7e-06	FF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44910 AT1G44910
fragaria_vesca	FvH4_2g32680 FvH4_2g32680 FvH4_2g32680 FvH4_2g32680
malus_domestica	MD08G1078500.v1.1 MD15G1065300.v1.1
prunus_persica	Prupe.1G419400_v2.0.a1
pyrus_communis	pycom08g06490 pycom15g06180
rosa_chinensis	RchiOBHm_Chr6g0309991
rosa_laevigata	RLG00000010518
rosa_multiflora	Rmu_sc0000294.1_g000011
rosa_roxburghii	Rroxscaffold_7G00158970
rosa_rugosa	Rorug06G0376700 Rorug06G0376800
rosa_samantha	Rh6AG490400 Rh6BG499900 Rh6CG504800 Rh6DG490800
rosa_wichuraiana	Rw6G042690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	268, 361, 997
Acc65I	GGTACC	1 cut(s)	46
AccB1I	GGYRCC	1 cut(s)	46
AccBSI	CCGCTC	1 cut(s)	1375
AccII	CGCG	1 cut(s)	1953
AclWI	GGATC	2 cut(s)	452, 937
AcsI	RAATTY	5 cut(s)	772, 1463, 1676, 2147, 2916
AcuI	CTGAAG	4 cut(s)	780, 828, 1662, 2070
AdeI	CACNNNGTG	1 cut(s)	1370
AfaI	GTAC	8 cut(s)	48, 351, 951, 1036, 1397, 1670, 1927, 1988
AfiI	CCNNNNNNNGG	4 cut(s)	359, 855, 1671, 1819
AjnI	CCWGG	8 cut(s)	169, 286, 853, 943, 1275, 1307, 1794, 1902
AjuI	GAANNNNNNNTTGG	2 cut(s)	2054, 2086
Alw26I	GTCTC	2 cut(s)	868, 2360
AlwI	GGATC	2 cut(s)	452, 937
AlwNI	CAGNNNCTG	2 cut(s)	461, 1175
Ama87I	CYCGRG	2 cut(s)	865, 1455
AoxI	GGCC	5 cut(s)	158, 224, 830, 1402, 2448
ApaI	GGGCCC	1 cut(s)	834
ApeKI	GCWGC	8 cut(s)	26, 142, 356, 398, 421, 1637, 1916, 2156
ApoI	RAATTY	5 cut(s)	772, 1463, 1676, 2147, 2916
AseI	ATTAAT	1 cut(s)	1335
Asp718I	GGTACC	1 cut(s)	46
AspLEI	GCGC	2 cut(s)	1355, 1953
AspS9I	GGNCC	4 cut(s)	830, 831, 1305, 1402
AsuC2I	CCSGG	1 cut(s)	1883
AsuHPI	GGTGA	4 cut(s)	1009, 1382, 1717, 2915
AvaI	CYCGRG	2 cut(s)	865, 1455
AvaII	GGWCC	1 cut(s)	1305
BaeGI	GKGCMC	1 cut(s)	834
BanI	GGYRCC	1 cut(s)	46
BanII	GRGCYC	2 cut(s)	834, 1456
BauI	CACGAG	2 cut(s)	723, 2441
BbsI	GAAGAC	2 cut(s)	948, 2836
BbvCI	CCTCAGC	1 cut(s)	22
BbvI	GCAGC	8 cut(s)	13, 154, 343, 410, 433, 1624, 1903, 2143
BccI	CCATC	8 cut(s)	250, 896, 1118, 1506, 2191, 2846, 2885, 2903
BceAI	ACGGC	5 cut(s)	103, 130, 475, 907, 977
BcgI	CGANNNNNNTGC	2 cut(s)	1979, 2013
BciT130I	CCWGG	8 cut(s)	171, 288, 855, 945, 1277, 1309, 1796, 1904
BciVI	GTATCC	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	1883
BcoDI	GTCTC	2 cut(s)	868, 2360
BfaI	CTAG	4 cut(s)	426, 558, 819, 1572
BfmI	CTRYAG	1 cut(s)	645
BfoI	RGCGCY	1 cut(s)	1356
BfuAI	ACCTGC	3 cut(s)	268, 361, 997
BfuI	GTATCC	1 cut(s)	159
BglII	AGATCT	1 cut(s)	1585
BisI	GCNGC	9 cut(s)	27, 143, 357, 399, 422, 1638, 1917, 2157, 2690
BlsI	GCNGC	9 cut(s)	28, 144, 358, 400, 423, 1639, 1918, 2158, 2691
BmcAI	AGTACT	1 cut(s)	1397
Bme1390I	CCNGG	9 cut(s)	171, 288, 855, 945, 1277, 1309, 1796, 1883, 1904
Bme18I	GGWCC	1 cut(s)	1305
BmeT110I	CYCGRG	2 cut(s)	865, 1455
BmgT120I	GGNCC	4 cut(s)	830, 831, 1305, 1402
BmiI	GGNNCC	5 cut(s)	48, 832, 1901, 2179, 2857
BmrFI	CCNGG	9 cut(s)	171, 288, 855, 945, 1277, 1309, 1796, 1883, 1904
BmrI	ACTGGG	2 cut(s)	1376, 2347
BmsI	GCATC	8 cut(s)	273, 604, 626, 1106, 1745, 2086, 2689, 2701
BmuI	ACTGGG	2 cut(s)	1376, 2347
BpiI	GAAGAC	2 cut(s)	948, 2836
BpmI	CTGGAG	4 cut(s)	364, 623, 834, 1703
Bpu10I	CCTNAGC	1 cut(s)	22
BpuEI	CTTGAG	5 cut(s)	315, 1086, 1122, 1634, 1835
BpuMI	CCSGG	1 cut(s)	1883
BsaI	GGTCTC	1 cut(s)	2360
BsaJI	CCNNGG	8 cut(s)	221, 368, 854, 960, 993, 1308, 1488, 2238
BsaWI	WCCGGW	1 cut(s)	1037
BsaXI	ACNNNNNCTCC	2 cut(s)	430, 460
Bsc4I	CCNNNNNNNGG	4 cut(s)	359, 855, 1671, 1819
Bse1I	ACTGG	8 cut(s)	227, 381, 567, 606, 872, 1239, 1371, 2342
Bse3DI	GCAATG	3 cut(s)	1326, 2106, 2127
BseBI	CCWGG	8 cut(s)	171, 288, 855, 945, 1277, 1309, 1796, 1904
BseDI	CCNNGG	8 cut(s)	221, 368, 854, 960, 993, 1308, 1488, 2238
BseGI	GGATG	6 cut(s)	378, 1891, 2047, 2101, 2599, 2734
BseLI	CCNNNNNNNGG	4 cut(s)	359, 855, 1671, 1819
BseMI	GCAATG	3 cut(s)	1326, 2106, 2127
BseMII	CTCAG	6 cut(s)	29, 36, 44, 169, 266, 764
BseNI	ACTGG	8 cut(s)	227, 381, 567, 606, 872, 1239, 1371, 2342
BseRI	GAGGAG	7 cut(s)	722, 771, 1217, 1844, 2234, 2489, 2522
BseSI	GKGCMC	1 cut(s)	834
BseXI	GCAGC	8 cut(s)	13, 154, 343, 410, 433, 1624, 1903, 2143
BseYI	CCCAGC	1 cut(s)	833
BsgI	GTGCAG	1 cut(s)	417
Bsh1236I	CGCG	1 cut(s)	1953
BshFI	GGCC	5 cut(s)	160, 226, 832, 1404, 2450
BshNI	GGYRCC	1 cut(s)	46
BsiHKCI	CYCGRG	2 cut(s)	865, 1455
BsiSI	CCGG	2 cut(s)	1038, 1882
BslFI	GGGAC	5 cut(s)	120, 224, 871, 991, 2405
BslI	CCNNNNNNNGG	4 cut(s)	359, 855, 1671, 1819
BsmAI	GTCTC	2 cut(s)	868, 2360
BsmFI	GGGAC	5 cut(s)	120, 224, 871, 991, 2405
BsmI	GAATGC	2 cut(s)	297, 1262
BsnI	GGCC	5 cut(s)	160, 226, 832, 1404, 2450
Bso31I	GGTCTC	1 cut(s)	2360
BsoBI	CYCGRG	2 cut(s)	865, 1455
Bsp120I	GGGCCC	1 cut(s)	830
Bsp1286I	GDGCHC	2 cut(s)	834, 1456
Bsp1407I	TGTACA	1 cut(s)	949
Bsp143I	GATC	8 cut(s)	457, 929, 1329, 1576, 1585, 1732, 2381, 2582
Bsp19I	CCATGG	1 cut(s)	960
BspANI	GGCC	5 cut(s)	160, 226, 832, 1404, 2450
BspCNI	CTCAG	6 cut(s)	28, 35, 43, 168, 265, 763
BspFNI	CGCG	1 cut(s)	1953
BspHI	TCATGA	1 cut(s)	2632
BspLI	GGNNCC	5 cut(s)	48, 832, 1901, 2179, 2857
BspMAI	CTGCAG	1 cut(s)	649
BspMI	ACCTGC	3 cut(s)	268, 361, 997
BspPI	GGATC	2 cut(s)	452, 937
BspQI	GCTCTTC	1 cut(s)	1638
BspT107I	GGYRCC	1 cut(s)	46
BspTNI	GGTCTC	1 cut(s)	2360
BsrBI	CCGCTC	1 cut(s)	1375
BsrDI	GCAATG	3 cut(s)	1326, 2106, 2127
BsrGI	TGTACA	1 cut(s)	949
BsrI	ACTGG	8 cut(s)	227, 381, 567, 606, 872, 1239, 1371, 2342
BssECI	CCNNGG	8 cut(s)	221, 368, 854, 960, 993, 1308, 1488, 2238
BssMI	GATC	8 cut(s)	457, 929, 1329, 1576, 1585, 1732, 2381, 2582
BssSI	CACGAG	2 cut(s)	723, 2441
BssT1I	CCWWGG	5 cut(s)	221, 368, 960, 1488, 2238
Bst2BI	CACGAG	2 cut(s)	723, 2441
Bst2UI	CCWGG	8 cut(s)	171, 288, 855, 945, 1277, 1309, 1796, 1904
Bst4CI	ACNGT	9 cut(s)	625, 862, 954, 1551, 1925, 1961, 1986, 2067, 2813
Bst6I	CTCTTC	5 cut(s)	1422, 1476, 1638, 1821, 2358
BstAPI	GCANNNNNTGC	1 cut(s)	1259
BstAUI	TGTACA	1 cut(s)	949
BstDEI	CTNAG	9 cut(s)	15, 22, 30, 155, 252, 750, 1738, 2295, 2586
BstDSI	CCRYGG	2 cut(s)	960, 993
BstENI	CCTNNNNNAGG	1 cut(s)	1817
BstF5I	GGATG	6 cut(s)	378, 1891, 2047, 2101, 2599, 2734
BstFNI	CGCG	1 cut(s)	1953
BstH2I	RGCGCY	1 cut(s)	1356
BstHHI	GCGC	2 cut(s)	1355, 1953
BstKTI	GATC	8 cut(s)	460, 932, 1332, 1579, 1588, 1735, 2384, 2585
BstMAI	GTCTC	2 cut(s)	868, 2360
BstMBI	GATC	8 cut(s)	457, 929, 1329, 1576, 1585, 1732, 2381, 2582
BstMWI	GCNNNNNNNGC	8 cut(s)	166, 292, 334, 353, 430, 1259, 1441, 2686
BstNI	CCWGG	8 cut(s)	171, 288, 855, 945, 1277, 1309, 1796, 1904
BstNSI	RCATGY	3 cut(s)	347, 812, 1916
BstSCI	CCNGG	9 cut(s)	169, 286, 853, 943, 1275, 1307, 1794, 1881, 1902
BstSFI	CTRYAG	1 cut(s)	645
BstSLI	GKGCMC	1 cut(s)	834
BstUI	CGCG	1 cut(s)	1953
BstV1I	GCAGC	8 cut(s)	13, 154, 343, 410, 433, 1624, 1903, 2143
BstV2I	GAAGAC	2 cut(s)	948, 2836
BstX2I	RGATCY	2 cut(s)	457, 1585
BstYI	RGATCY	2 cut(s)	457, 1585
BsuI	GTATCC	1 cut(s)	159
BsuRI	GGCC	5 cut(s)	160, 226, 832, 1404, 2450
BtgI	CCRYGG	2 cut(s)	960, 993
BtsCI	GGATG	6 cut(s)	378, 1891, 2047, 2101, 2599, 2734
BtsI	GCAGTG	1 cut(s)	1010
BtsIMutI	CAGTG	4 cut(s)	599, 1010, 1364, 2818
BveI	ACCTGC	3 cut(s)	268, 361, 997
CaiI	CAGNNNCTG	2 cut(s)	461, 1175
CciI	TCATGA	1 cut(s)	2632
CfoI	GCGC	2 cut(s)	1355, 1953
Cfr13I	GGNCC	4 cut(s)	830, 831, 1305, 1402
CseI	GACGC	2 cut(s)	1751, 2258
Csp6I	GTAC	8 cut(s)	47, 350, 950, 1035, 1396, 1669, 1926, 1987
CspCI	CAANNNNNGTGG	2 cut(s)	1283, 1318
CviAII	CATG	8 cut(s)	176, 344, 785, 809, 961, 1913, 2133, 2633
CviQI	GTAC	8 cut(s)	47, 350, 950, 1035, 1396, 1669, 1926, 1987
DdeI	CTNAG	9 cut(s)	15, 22, 30, 155, 252, 750, 1738, 2295, 2586
DpnI	GATC	8 cut(s)	459, 931, 1331, 1578, 1587, 1734, 2383, 2584
DpnII	GATC	8 cut(s)	457, 929, 1329, 1576, 1585, 1732, 2381, 2582
DraIII	CACNNNGTG	1 cut(s)	1370
Eam1104I	CTCTTC	5 cut(s)	1422, 1476, 1638, 1821, 2358
EarI	CTCTTC	5 cut(s)	1422, 1476, 1638, 1821, 2358
EciI	GGCGGA	1 cut(s)	1879
Eco130I	CCWWGG	5 cut(s)	221, 368, 960, 1488, 2238
Eco24I	GRGCYC	2 cut(s)	834, 1456
Eco31I	GGTCTC	1 cut(s)	2360
Eco47I	GGWCC	1 cut(s)	1305
Eco57I	CTGAAG	4 cut(s)	780, 828, 1662, 2070
Eco88I	CYCGRG	2 cut(s)	865, 1455
EcoNI	CCTNNNNNAGG	1 cut(s)	1817
EcoRII	CCWGG	8 cut(s)	169, 286, 853, 943, 1275, 1307, 1794, 1902
EcoT14I	CCWWGG	5 cut(s)	221, 368, 960, 1488, 2238
EcoT22I	ATGCAT	2 cut(s)	619, 1264
EcoT38I	GRGCYC	2 cut(s)	834, 1456
ErhI	CCWWGG	5 cut(s)	221, 368, 960, 1488, 2238
FaeI	CATG	8 cut(s)	179, 347, 788, 812, 964, 1916, 2136, 2636
FalI	AAGNNNNNCTT	2 cut(s)	433, 465
FaqI	GGGAC	5 cut(s)	120, 224, 871, 991, 2405
FatI	CATG	8 cut(s)	175, 343, 784, 808, 960, 1912, 2132, 2632
FauI	CCCGC	1 cut(s)	2867
FauNDI	CATATG	2 cut(s)	516, 2215
Fnu4HI	GCNGC	9 cut(s)	27, 143, 357, 399, 422, 1638, 1917, 2157, 2690
FokI	GGATG	6 cut(s)	385, 1898, 2054, 2108, 2606, 2741
FriOI	GRGCYC	2 cut(s)	834, 1456
Fsp4HI	GCNGC	9 cut(s)	27, 143, 357, 399, 422, 1638, 1917, 2157, 2690
FspBI	CTAG	4 cut(s)	426, 558, 819, 1572
GlaI	GCGC	2 cut(s)	1354, 1952
GluI	GCNGC	9 cut(s)	27, 143, 357, 399, 422, 1638, 1917, 2157, 2690
GsaI	CCCAGC	1 cut(s)	837
GsuI	CTGGAG	4 cut(s)	364, 623, 834, 1703
HaeII	RGCGCY	1 cut(s)	1356
HaeIII	GGCC	5 cut(s)	160, 226, 832, 1404, 2450
HapII	CCGG	2 cut(s)	1038, 1882
HgaI	GACGC	2 cut(s)	1751, 2258
HhaI	GCGC	2 cut(s)	1355, 1953
Hin1II	CATG	8 cut(s)	179, 347, 788, 812, 964, 1916, 2136, 2636
Hin6I	GCGC	2 cut(s)	1353, 1951
HinP1I	GCGC	2 cut(s)	1353, 1951
HincII	GTYRAC	4 cut(s)	1060, 1186, 2273, 2617
HindII	GTYRAC	4 cut(s)	1060, 1186, 2273, 2617
HindIII	AAGCTT	3 cut(s)	1772, 2207, 2297
HpaII	CCGG	2 cut(s)	1038, 1882
HphI	GGTGA	4 cut(s)	1009, 1382, 1717, 2915
Hpy166II	GTNNAC	8 cut(s)	950, 1060, 1186, 1294, 1708, 2273, 2438, 2617
Hpy188I	TCNGA	9 cut(s)	282, 502, 766, 1201, 1300, 1666, 2685, 2722, 2809
Hpy8I	GTNNAC	8 cut(s)	950, 1060, 1186, 1294, 1708, 2273, 2438, 2617
Hpy99I	CGWCG	1 cut(s)	928
HpyCH4III	ACNGT	9 cut(s)	625, 862, 954, 1551, 1925, 1961, 1986, 2067, 2813
HpyCH4IV	ACGT	3 cut(s)	1188, 2557, 2788
HpyF10VI	GCNNNNNNNGC	8 cut(s)	166, 292, 334, 353, 430, 1259, 1441, 2686
HpyF3I	CTNAG	9 cut(s)	15, 22, 30, 155, 252, 750, 1738, 2295, 2586
HpySE526I	ACGT	3 cut(s)	1188, 2557, 2788
Hsp92II	CATG	8 cut(s)	179, 347, 788, 812, 964, 1916, 2136, 2636
HspAI	GCGC	2 cut(s)	1353, 1951
KpnI	GGTACC	1 cut(s)	50
Kzo9I	GATC	8 cut(s)	457, 929, 1329, 1576, 1585, 1732, 2381, 2582
LguI	GCTCTTC	1 cut(s)	1638
LmnI	GCTCC	8 cut(s)	88, 815, 946, 1127, 1312, 1515, 1831, 1905
Lsp1109I	GCAGC	8 cut(s)	13, 154, 343, 410, 433, 1624, 1903, 2143
LweI	GCATC	8 cut(s)	273, 604, 626, 1106, 1745, 2086, 2689, 2701
MaeI	CTAG	4 cut(s)	426, 558, 819, 1572
MaeII	ACGT	3 cut(s)	1188, 2557, 2788
MaeIII	GTNAC	8 cut(s)	229, 406, 676, 880, 1189, 1525, 1808, 2765
MalI	GATC	8 cut(s)	459, 931, 1331, 1578, 1587, 1734, 2383, 2584
MbiI	CCGCTC	1 cut(s)	1375
MboI	GATC	8 cut(s)	457, 929, 1329, 1576, 1585, 1732, 2381, 2582
MfeI	CAATTG	3 cut(s)	1119, 1212, 1856
MflI	RGATCY	2 cut(s)	457, 1585
MhlI	GDGCHC	2 cut(s)	834, 1456
MlyI	GAGTC	7 cut(s)	589, 772, 877, 1186, 1493, 1694, 2735
MmeI	TCCRAC	2 cut(s)	958, 1398
Mph1103I	ATGCAT	2 cut(s)	619, 1264
MslI	CAYNNNNRTG	3 cut(s)	393, 2763, 2850
MspA1I	CMGCKG	2 cut(s)	26, 800
MspI	CCGG	2 cut(s)	1038, 1882
MspR9I	CCNGG	9 cut(s)	171, 288, 855, 945, 1277, 1309, 1796, 1883, 1904
MunI	CAATTG	3 cut(s)	1119, 1212, 1856
Mva1269I	GAATGC	2 cut(s)	297, 1262
MvaI	CCWGG	8 cut(s)	171, 288, 855, 945, 1277, 1309, 1796, 1904
MvnI	CGCG	1 cut(s)	1953
MwoI	GCNNNNNNNGC	8 cut(s)	166, 292, 334, 353, 430, 1259, 1441, 2686
NciI	CCSGG	1 cut(s)	1883
NcoI	CCATGG	1 cut(s)	960
NdeI	CATATG	2 cut(s)	516, 2215
NdeII	GATC	8 cut(s)	457, 929, 1329, 1576, 1585, 1732, 2381, 2582
NlaIII	CATG	8 cut(s)	179, 347, 788, 812, 964, 1916, 2136, 2636
NlaIV	GGNNCC	5 cut(s)	48, 832, 1901, 2179, 2857
NmuCI	GTSAC	3 cut(s)	1189, 1808, 2765
NsiI	ATGCAT	2 cut(s)	619, 1264
NspI	RCATGY	3 cut(s)	347, 812, 1916
PaeR7I	CTCGAG	1 cut(s)	865
PagI	TCATGA	1 cut(s)	2632
PciSI	GCTCTTC	1 cut(s)	1638
PctI	GAATGC	2 cut(s)	297, 1262
PfeI	GAWTC	3 cut(s)	686, 1280, 2804
PflFI	GACNNNGTC	1 cut(s)	111
PfoI	TCCNGGA	3 cut(s)	1275, 1794, 1902
PkrI	GCNGC	9 cut(s)	28, 144, 358, 400, 423, 1639, 1918, 2158, 2691
PleI	GAGTC	7 cut(s)	589, 772, 876, 1186, 1492, 1693, 2735
PpsI	GAGTC	7 cut(s)	589, 772, 876, 1186, 1492, 1693, 2735
PshBI	ATTAAT	1 cut(s)	1335
Psp6I	CCWGG	8 cut(s)	169, 286, 853, 943, 1275, 1307, 1794, 1902
PspFI	CCCAGC	1 cut(s)	833
PspGI	CCWGG	8 cut(s)	169, 286, 853, 943, 1275, 1307, 1794, 1902
PspN4I	GGNNCC	5 cut(s)	48, 832, 1901, 2179, 2857
PspOMI	GGGCCC	1 cut(s)	830
PspPI	GGNCC	4 cut(s)	830, 831, 1305, 1402
PstI	CTGCAG	1 cut(s)	649
PstNI	CAGNNNCTG	2 cut(s)	461, 1175
PsuI	RGATCY	2 cut(s)	457, 1585
PsyI	GACNNNGTC	1 cut(s)	111
PvuII	CAGCTG	2 cut(s)	26, 800
RsaI	GTAC	8 cut(s)	48, 351, 951, 1036, 1397, 1670, 1927, 1988
RsaNI	GTAC	8 cut(s)	47, 350, 950, 1035, 1396, 1669, 1926, 1987
RseI	CAYNNNNRTG	3 cut(s)	393, 2763, 2850
SapI	GCTCTTC	1 cut(s)	1638
SatI	GCNGC	9 cut(s)	27, 143, 357, 399, 422, 1638, 1917, 2157, 2690
Sau3AI	GATC	8 cut(s)	457, 929, 1329, 1576, 1585, 1732, 2381, 2582
Sau96I	GGNCC	4 cut(s)	830, 831, 1305, 1402
ScaI	AGTACT	1 cut(s)	1397
SchI	GAGTC	7 cut(s)	589, 772, 877, 1186, 1493, 1694, 2735
ScrFI	CCNGG	9 cut(s)	171, 288, 855, 945, 1277, 1309, 1796, 1883, 1904
SduI	GDGCHC	2 cut(s)	834, 1456
SfaNI	GCATC	8 cut(s)	273, 604, 626, 1106, 1745, 2086, 2689, 2701
SfcI	CTRYAG	1 cut(s)	645
Sfr274I	CTCGAG	1 cut(s)	865
SinI	GGWCC	1 cut(s)	1305
SlaI	CTCGAG	1 cut(s)	865
SmiMI	CAYNNNNRTG	3 cut(s)	393, 2763, 2850
SmlI	CTYRAG	6 cut(s)	330, 865, 1101, 1137, 1613, 1814
SmoI	CTYRAG	6 cut(s)	330, 865, 1101, 1137, 1613, 1814
SspI	AATATT	1 cut(s)	128
SspMI	CTAG	4 cut(s)	426, 558, 819, 1572
StyD4I	CCNGG	9 cut(s)	169, 286, 853, 943, 1275, 1307, 1794, 1881, 1902
StyI	CCWWGG	5 cut(s)	221, 368, 960, 1488, 2238
TaaI	ACNGT	9 cut(s)	625, 862, 954, 1551, 1925, 1961, 1986, 2067, 2813
TaiI	ACGT	3 cut(s)	1191, 2560, 2791
TaqI	TCGA	4 cut(s)	37, 866, 2821, 2848
TatI	WGTACW	3 cut(s)	949, 1395, 1668
TauI	GCSGC	1 cut(s)	2692
TfiI	GAWTC	3 cut(s)	686, 1280, 2804
TscAI	CASTG	4 cut(s)	606, 1017, 1371, 2818
TseFI	GTSAC	3 cut(s)	1189, 1808, 2765
TseI	GCWGC	8 cut(s)	26, 142, 356, 398, 421, 1637, 1916, 2156
Tsp45I	GTSAC	3 cut(s)	1189, 1808, 2765
TspGWI	ACGGA	1 cut(s)	2479
TspRI	CASTG	4 cut(s)	606, 1017, 1371, 2818
Tth111I	GACNNNGTC	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	1305
VspI	ATTAAT	1 cut(s)	1335
XagI	CCTNNNNNAGG	1 cut(s)	1817
XapI	RAATTY	5 cut(s)	772, 1463, 1676, 2147, 2916
XceI	RCATGY	3 cut(s)	347, 812, 1916
XhoI	CTCGAG	1 cut(s)	865
XspI	CTAG	4 cut(s)	426, 558, 819, 1572
ZrmI	AGTACT	1 cut(s)	1397
Zsp2I	ATGCAT	2 cut(s)	619, 1264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.