Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004759

Physical Location & Seq

Genomic Coordinates Reverse (-)

5263791 .. 5264598

Gene Structure 808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g06750.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAAGTACTCGGATTTGGTGGCTGGCTGCTCAGGACAAAGTTGGAAGCTATTAGCCCTTATAGTTTCTGCAGAGCAGCGCTTCAAGGATGCTGAAACTATAGTTGATTTTGCTTTGGACGAAGCCGGAAGAGTGGATCAGTTAGAACTGCTCAGGTTGAAAGCCGTGCTTCAAGTTGCTCAGGAACAACCCAAGCAAGCAATAGAAACCTACAGAATGTTGCTAACTCTTGTTCAAGCACAGAGGGATAAAAAAGCTAAGAACTCCGAGCAAGAGAAAACCTTTGATTCCGAGGCGTTTGTCGAAAGAAACTTGGAAAAGGAAGCATGGCGGGACTTGGCAGCCGTTTATACAAAACTCGGTTTGTGGAGTGATGCAGAATTATGTGTCAACAAAGCCAAATTGATCGACTTTTACTCTGCCCATGGTTGGCACACGACGGTGTTTGAAGCTCAATCACAATACAAGGAAGCCCTTATTTCATTCTCAGTCGCATTGTCAATAGAGCCAGATCATGTTCCAATCATCGTTTCGACTGCAGAAGTATTGACGAAACTTGGTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016310 GO:0019637 GO:0030258 GO:0033036 GO:0034613 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0051179 GO:0051641 GO:0070727 GO:0071704 GO:0071944 GO:0072657 GO:0072659 GO:1990778

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_8

Protein Analysis

189

Amino Acids

21.17

Weight (kDa)

5.18

Isoelectric Point (pI)

31.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27460 AT1G27460 AT1G27460
fragaria_vesca	FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080
malus_domestica	MD15G1069300.v1.1
prunus_persica	Prupe.1G422800_v2.0.a1 Prupe.1G422800_v2.0.a1 Prupe.1G422800_v2.0.a1
pyrus_communis	pycom08g06750 pycom15g06540
rosa_chinensis	RchiOBHm_Chr6g0309631
rosa_laevigata	RLG00000010548
rosa_multiflora	Rmu_co8186100.1_g000001 Rmu_sc0007632.1_g000005 Rmu_sc0008462.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159270
rosa_rugosa	Rorug06G0373200 Rorug06G0373300
rosa_samantha	Rh6AG486900 Rh6BG496500 Rh6CG501200 Rh6DG487400
rosa_wichuraiana	Rw6G042410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	331
AclWI	GGATC	1 cut(s)	144
AfaI	GTAC	1 cut(s)	8
AfeI	AGCGCT	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	429
AgsI	TTSAA	5 cut(s)	85, 160, 173, 236, 449
AjuI	GAANNNNNNNTTGG	2 cut(s)	514, 546
AleI	CACNNNNGTG	1 cut(s)	440
AluBI	AGCT	4 cut(s)	49, 257, 452, 564
AluI	AGCT	4 cut(s)	49, 257, 452, 564
AlwI	GGATC	1 cut(s)	144
Aor51HI	AGCGCT	1 cut(s)	80
ApeKI	GCWGC	3 cut(s)	27, 76, 341
AspLEI	GCGC	1 cut(s)	81
BbvI	GCAGC	3 cut(s)	14, 88, 353
BceAI	ACGGC	2 cut(s)	149, 329
BfaI	CTAG	1 cut(s)	565
BfmI	CTRYAG	4 cut(s)	69, 99, 211, 537
BfoI	RGCGCY	1 cut(s)	82
BisI	GCNGC	3 cut(s)	28, 77, 342
BlsI	GCNGC	3 cut(s)	29, 78, 343
BmcAI	AGTACT	1 cut(s)	8
BmsI	GCATC	2 cut(s)	79, 364
Bpu10I	CCTNAGC	3 cut(s)	31, 152, 180
BsaJI	CCNNGG	2 cut(s)	291, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	291, 424
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	429
BseMII	CTCAG	4 cut(s)	45, 166, 194, 501
BseXI	GCAGC	3 cut(s)	14, 88, 353
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	1 cut(s)	429
BsmFI	GGGAC	1 cut(s)	347
Bsp143I	GATC	3 cut(s)	136, 405, 511
Bsp19I	CCATGG	1 cut(s)	424
BspACI	CCGC	1 cut(s)	331
BspCNI	CTCAG	4 cut(s)	44, 165, 193, 500
BspMAI	CTGCAG	2 cut(s)	73, 541
BspPI	GGATC	1 cut(s)	144
BssECI	CCNNGG	2 cut(s)	291, 424
BssMI	GATC	3 cut(s)	136, 405, 511
BssT1I	CCWWGG	1 cut(s)	424
Bst4CI	ACNGT	1 cut(s)	442
Bst6I	CTCTTC	1 cut(s)	124
BstC8I	GCNNGC	2 cut(s)	25, 198
BstDEI	CTNAG	5 cut(s)	31, 152, 180, 258, 487
BstDSI	CCRYGG	1 cut(s)	424
BstF5I	GGATG	1 cut(s)	94
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	3 cut(s)	139, 408, 514
BstMBI	GATC	3 cut(s)	136, 405, 511
BstSFI	CTRYAG	4 cut(s)	69, 99, 211, 537
BstV1I	GCAGC	3 cut(s)	14, 88, 353
BtgI	CCRYGG	1 cut(s)	424
BtsCI	GGATG	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	25, 198
CfoI	GCGC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	3 cut(s)	327, 425, 515
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	5 cut(s)	31, 152, 180, 258, 487
DpnI	GATC	3 cut(s)	138, 407, 513
DpnII	GATC	3 cut(s)	136, 405, 511
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	424
Eco47III	AGCGCT	1 cut(s)	80
EcoT14I	CCWWGG	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	424
FaeI	CATG	3 cut(s)	330, 428, 518
FaiI	YATR	7 cut(s)	62, 101, 328, 351, 385, 426, 516
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	3 cut(s)	326, 424, 514
FauI	CCCGC	1 cut(s)	324
Fnu4HI	GCNGC	3 cut(s)	28, 77, 342
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	3 cut(s)	28, 77, 342
FspBI	CTAG	1 cut(s)	565
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	3 cut(s)	28, 77, 342
HaeII	RGCGCY	1 cut(s)	82
HapII	CCGG	1 cut(s)	126
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	3 cut(s)	330, 428, 518
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	1 cut(s)	287
HpaII	CCGG	1 cut(s)	126
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	3 cut(s)	13, 268, 292
Hpy188III	TCNNGA	2 cut(s)	33, 182
Hpy8I	GTNNAC	1 cut(s)	391
Hpy99I	CGWCG	1 cut(s)	442
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4V	TGCA	3 cut(s)	71, 377, 539
HpyF3I	CTNAG	5 cut(s)	31, 152, 180, 258, 487
Hsp92II	CATG	3 cut(s)	330, 428, 518
HspAI	GCGC	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	136, 405, 511
LpnPI	CCDG	6 cut(s)	9, 18, 139, 139, 167, 522
Lsp1109I	GCAGC	3 cut(s)	14, 88, 353
LweI	GCATC	2 cut(s)	79, 364
MaeI	CTAG	1 cut(s)	565
MalI	GATC	3 cut(s)	138, 407, 513
MboI	GATC	3 cut(s)	136, 405, 511
MboII	GAAGA	1 cut(s)	141
MluCI	AATT	2 cut(s)	380, 401
MmeI	TCCRAC	1 cut(s)	23
MnlI	CCTC	2 cut(s)	237, 286
MslI	CAYNNNNRTG	1 cut(s)	440
MspI	CCGG	1 cut(s)	126
NcoI	CCATGG	1 cut(s)	424
NdeII	GATC	3 cut(s)	136, 405, 511
NlaIII	CATG	3 cut(s)	330, 428, 518
OliI	CACNNNNGTG	1 cut(s)	440
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	3 cut(s)	29, 78, 343
PstI	CTGCAG	2 cut(s)	73, 541
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
RseI	CAYNNNNRTG	1 cut(s)	440
SatI	GCNGC	3 cut(s)	28, 77, 342
Sau3AI	GATC	3 cut(s)	136, 405, 511
ScaI	AGTACT	1 cut(s)	8
SetI	ASST	7 cut(s)	51, 158, 212, 259, 284, 454, 566
SfaNI	GCATC	2 cut(s)	79, 364
SfcI	CTRYAG	4 cut(s)	69, 99, 211, 537
SmiMI	CAYNNNNRTG	1 cut(s)	440
Sse9I	AATT	2 cut(s)	380, 401
SsiI	CCGC	1 cut(s)	331
SspMI	CTAG	1 cut(s)	565
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	1 cut(s)	442
TaqI	TCGA	3 cut(s)	303, 408, 533
TasI	AATT	2 cut(s)	380, 401
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	1 cut(s)	287
TseI	GCWGC	3 cut(s)	27, 76, 341
TspDTI	ATGAA	2 cut(s)	17, 471
XspI	CTAG	1 cut(s)	565
ZrmI	AGTACT	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.