Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8186100.1

Orthogroup ID

OG0004759

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 381

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8186100.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 311 bp

gtacgttatttgaagctcaatccaagcacaaggaagccctcatttcattctcagtatcactgtcaatagagccagattatgttccaagcatcgtttcaactgcagaagtattgatgaaactcggtactggatcactccctattgcaagaagctttttaatgaatgctctgcgattagaacccataaaccatgaggcttggttgaatctcggaatgttgtcgaaaatggaaggctcattgcagcaagcagcagaatttttccaggctgcatatgagcttcagctgtcagctccggtgcaaagctttgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016310 GO:0019637 GO:0030258 GO:0033036 GO:0034613 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0051179 GO:0051641 GO:0070727 GO:0071704 GO:0071944 GO:0072657 GO:0072659 GO:1990778

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_8

Protein Analysis

102

Amino Acids

11.21

Weight (kDa)

4.98

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27460 AT1G27460 AT1G27460
fragaria_vesca	FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080
malus_domestica	MD15G1069300.v1.1
prunus_persica	Prupe.1G422800_v2.0.a1 Prupe.1G422800_v2.0.a1 Prupe.1G422800_v2.0.a1
pyrus_communis	pycom08g06750 pycom15g06540
rosa_chinensis	RchiOBHm_Chr6g0309631
rosa_laevigata	RLG00000010548
rosa_multiflora	Rmu_co8186100.1_g000001 Rmu_sc0007632.1_g000005 Rmu_sc0008462.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159270
rosa_rugosa	Rorug06G0373200 Rorug06G0373300
rosa_samantha	Rh6AG486900 Rh6BG496500 Rh6CG501200 Rh6DG487400
rosa_wichuraiana	Rw6G042410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	253
AcuI	CTGAAG	1 cut(s)	262
AfaI	GTAC	2 cut(s)	3, 126
AgsI	TTSAA	3 cut(s)	13, 98, 204
AjnI	CCWGG	1 cut(s)	260
AjuI	GAANNNNNNNTTGG	2 cut(s)	78, 110
AluBI	AGCT	6 cut(s)	16, 152, 276, 282, 289, 302
AluI	AGCT	6 cut(s)	16, 152, 276, 282, 289, 302
AlwI	GGATC	1 cut(s)	138
ApeKI	GCWGC	3 cut(s)	240, 247, 265
ApoI	RAATTY	1 cut(s)	253
BbvI	GCAGC	3 cut(s)	252, 252, 259
BciT130I	CCWGG	1 cut(s)	262
BfmI	CTRYAG	1 cut(s)	101
BisI	GCNGC	3 cut(s)	241, 248, 266
BlsI	GCNGC	3 cut(s)	242, 249, 267
Bme1390I	CCNGG	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	262
BmsI	GCATC	1 cut(s)	98
BsaWI	WCCGGW	1 cut(s)	291
Bse1I	ACTGG	1 cut(s)	132
Bse3DI	GCAATG	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	262
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	132
BseXI	GCAGC	3 cut(s)	252, 252, 259
BsiSI	CCGG	1 cut(s)	292
BsmI	GAATGC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	64
BspMAI	CTGCAG	1 cut(s)	105
BspPI	GGATC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	132
BssMI	GATC	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	245
BstDEI	CTNAG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstNI	CCWGG	1 cut(s)	262
BstSCI	CCNGG	1 cut(s)	260
BstSFI	CTRYAG	1 cut(s)	101
BstV1I	GCAGC	3 cut(s)	252, 252, 259
BtsIMutI	CAGTG	1 cut(s)	58
Cac8I	GCNNGC	1 cut(s)	245
Csp6I	GTAC	2 cut(s)	2, 125
CviAII	CATG	1 cut(s)	190
CviQI	GTAC	2 cut(s)	2, 125
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	260
FaeI	CATG	1 cut(s)	193
FaiI	YATR	5 cut(s)	80, 184, 191, 270, 272
FatI	CATG	1 cut(s)	189
FauNDI	CATATG	1 cut(s)	270
Fnu4HI	GCNGC	3 cut(s)	241, 248, 266
Fsp4HI	GCNGC	3 cut(s)	241, 248, 266
GluI	GCNGC	3 cut(s)	241, 248, 266
HapII	CCGG	1 cut(s)	292
Hin1II	CATG	1 cut(s)	193
HindIII	AAGCTT	2 cut(s)	150, 300
HinfI	GANTC	1 cut(s)	204
HpaII	CCGG	1 cut(s)	292
Hpy188I	TCNGA	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4IV	ACGT	1 cut(s)	4
HpyCH4V	TGCA	5 cut(s)	103, 145, 240, 268, 297
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	1 cut(s)	4
Hsp92II	CATG	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	294
LpnPI	CCDG	5 cut(s)	86, 113, 247, 274, 305
Lsp1109I	GCAGC	3 cut(s)	252, 252, 259
LweI	GCATC	1 cut(s)	98
MaeII	ACGT	1 cut(s)	4
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MluCI	AATT	1 cut(s)	253
MnlI	CCTC	2 cut(s)	49, 186
MseI	TTAA	1 cut(s)	157
MspA1I	CMGCKG	1 cut(s)	282
MspI	CCGG	1 cut(s)	292
MspR9I	CCNGG	1 cut(s)	262
Mva1269I	GAATGC	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	262
NdeI	CATATG	1 cut(s)	270
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	1 cut(s)	193
PctI	GAATGC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	204
PkrI	GCNGC	3 cut(s)	242, 249, 267
Psp6I	CCWGG	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	260
PstI	CTGCAG	1 cut(s)	105
PvuII	CAGCTG	1 cut(s)	282
RsaI	GTAC	2 cut(s)	3, 126
RsaNI	GTAC	2 cut(s)	2, 125
SaqAI	TTAA	1 cut(s)	157
SatI	GCNGC	3 cut(s)	241, 248, 266
Sau3AI	GATC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	262
SetI	ASST	7 cut(s)	7, 18, 154, 278, 284, 291, 304
SfaNI	GCATC	1 cut(s)	98
SfcI	CTRYAG	1 cut(s)	101
Sse9I	AATT	1 cut(s)	253
StyD4I	CCNGG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	62
TaiI	ACGT	1 cut(s)	7
TaqI	TCGA	1 cut(s)	220
TasI	AATT	1 cut(s)	253
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	1 cut(s)	157
Tru9I	TTAA	1 cut(s)	157
TscAI	CASTG	1 cut(s)	65
TseI	GCWGC	3 cut(s)	240, 247, 265
TspDTI	ATGAA	3 cut(s)	35, 130, 175
TspRI	CASTG	1 cut(s)	65
XapI	RAATTY	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.