Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008462.1

Orthogroup ID

OG0004759

Physical Location & Seq

Genomic Coordinates Reverse (-)

1338 .. 3128

Gene Structure 1791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008462.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

atgttgtgtgcttgttcaggagagcagttcaaatttgaagagccacctcagtcgccggagtcattggctaccagggacttctcggcgagtggcctgtcttcgaggaccatcggagattgggacttgggctcgaaatttgatgacattcaagtagatgaggctgagtccactctcaaagaagctctatctttgaattatgaggaagctagggcgttgttggggaggcttgagttccagagagggaattttgatgctgctcttcaggtgtttcagggtattgacattaggaacttaaccccaagaatggccaaggccattgtcgagagaattaggcaccgaaaaccgcgtgtgaaaggcgatagctatgtgatgctcaatgtgatgtcctcgcattcagtgagcttactgactgaggcaatattgctcaaggcaagatcacttggggagctcggaaggtttagagaggctgcaaaggaatgcaaagttattcttgacacagttgaattggcattgcctaacggaatgcctgaagaaattggtgaggactgtaaattgcaagaaatgtttcacaaagcacttgagttgctccctattttctggaccaaggcagggtatcttgaagaagcaataactgcatatcgccgggctctgatcaagccatggaatttggaccctgagaggttggctagtgttcagaaaagcttagcttgcactttactttatagtggtgtggaagcaagccttccacctcagctgcaagtatggggtccaactacacccaagaacaatacagaagaagcagtcctgttgttgttgatacttatgaaaaagatggcattgaatcaaataaagtgggattcagaagttatggatcatctgagttatgcactttctgttactggacagttcgaattattagctaatcatttcgagcaggcccttccagggttgtatggtcgagctgagagatggtacttgcttgcactttgttacagtgcctgtggacaaaatgaagaagcactgaaccttttgaaaaaggttgcaggctgttctgaagcaaagaacaagccccatttcctatcttttctcttgggagcaaagctatgttccctagatacggttcatgctcatgaagggatagaattttcgcgtaaagctattgacttcccatcatcttgtggtacgttatttgaagctcaatccaagcacaaggaagccctcatttcattctcagtatcactgtcaatagagccagattatgttccaagcatcgtttcaactgcagaagtattgatgaaactcggtactggatcactccctattgcaagaagctttttaatgaatgctctgcgattagaacccataaaccatgaggcttggttgaatctcggaatgttgtcgaaaatggaaggctcattgcagcaagcagcagaatttttccaggctgcatatgagcttcagctgtcagctccggtgcaaagctttgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016310 GO:0019637 GO:0030258 GO:0033036 GO:0034613 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0051179 GO:0051641 GO:0070727 GO:0071704 GO:0071944 GO:0072657 GO:0072659 GO:1990778

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_8

Protein Analysis

496

Amino Acids

55.18

Weight (kDa)

5.48

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27460 AT1G27460 AT1G27460
fragaria_vesca	FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080
malus_domestica	MD15G1069300.v1.1
prunus_persica	Prupe.1G422800_v2.0.a1 Prupe.1G422800_v2.0.a1 Prupe.1G422800_v2.0.a1
pyrus_communis	pycom08g06750 pycom15g06540
rosa_chinensis	RchiOBHm_Chr6g0309631
rosa_laevigata	RLG00000010548
rosa_multiflora	Rmu_co8186100.1_g000001 Rmu_sc0007632.1_g000005 Rmu_sc0008462.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159270
rosa_rugosa	Rorug06G0373200 Rorug06G0373300
rosa_samantha	Rh6AG486900 Rh6BG496500 Rh6CG501200 Rh6DG487400
rosa_wichuraiana	Rw6G042410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	333
AccII	CGCG	2 cut(s)	346, 1150
AciI	CCGC	1 cut(s)	344
AclWI	GGATC	2 cut(s)	879, 1318
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	6 cut(s)	32, 134, 244, 664, 1142, 1433
AcuI	CTGAAG	4 cut(s)	245, 549, 1074, 1442
AfaI	GTAC	3 cut(s)	974, 1183, 1306
AfiI	CCNNNNNNNGG	4 cut(s)	304, 609, 945, 1117
AjnI	CCWGG	3 cut(s)	71, 943, 1440
AjuI	GAANNNNNNNTTGG	2 cut(s)	1258, 1290
Alw21I	GWGCWC	1 cut(s)	450
AlwI	GGATC	2 cut(s)	879, 1318
AlwNI	CAGNNNCTG	1 cut(s)	999
AoxI	GGCC	4 cut(s)	91, 306, 312, 936
ApeKI	GCWGC	6 cut(s)	254, 467, 754, 1420, 1427, 1445
ApoI	RAATTY	6 cut(s)	32, 134, 244, 664, 1142, 1433
Asp700I	GAANNNNTTC	1 cut(s)	564
AspS9I	GGNCC	5 cut(s)	105, 600, 670, 767, 937
AsuC2I	CCSGG	1 cut(s)	644
AsuHPI	GGTGA	1 cut(s)	551
AsuII	TTCGAA	1 cut(s)	909
AvaII	GGWCC	4 cut(s)	105, 600, 670, 767
BalI	TGGCCA	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	333
BanII	GRGCYC	3 cut(s)	131, 450, 649
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	450
BbvCI	CCTCAGC	1 cut(s)	750
BbvI	GCAGC	6 cut(s)	241, 454, 741, 1432, 1432, 1439
BccI	CCATC	4 cut(s)	116, 826, 963, 1177
BciT130I	CCWGG	3 cut(s)	73, 945, 1442
BclI	TGATCA	1 cut(s)	651
BcnI	CCSGG	1 cut(s)	644
BfaI	CTAG	3 cut(s)	207, 687, 1112
BfmI	CTRYAG	1 cut(s)	1281
BisI	GCNGC	6 cut(s)	255, 468, 755, 1421, 1428, 1446
BlpI	GCTNAGC	1 cut(s)	703
BlsI	GCNGC	6 cut(s)	256, 469, 756, 1422, 1429, 1447
Bme1390I	CCNGG	4 cut(s)	73, 644, 945, 1442
Bme18I	GGWCC	4 cut(s)	105, 600, 670, 767
BmgT120I	GGNCC	5 cut(s)	105, 600, 670, 767, 937
BmiI	GGNNCC	3 cut(s)	335, 672, 768
BmrFI	CCNGG	4 cut(s)	73, 644, 945, 1442
BmsI	GCATC	3 cut(s)	241, 360, 1278
BpiI	GAAGAC	1 cut(s)	90
Bpu10I	CCTNAGC	1 cut(s)	750
Bpu1102I	GCTNAGC	1 cut(s)	703
Bpu14I	TTCGAA	1 cut(s)	909
BpuEI	CTTGAG	3 cut(s)	248, 410, 599
BpuMI	CCSGG	1 cut(s)	644
BsaJI	CCNNGG	5 cut(s)	72, 309, 603, 659, 944
BsaWI	WCCGGW	1 cut(s)	1471
Bsc4I	CCNNNNNNNGG	4 cut(s)	304, 609, 945, 1117
Bse1I	ACTGG	2 cut(s)	904, 1312
Bse3DI	GCAATG	2 cut(s)	509, 1415
BseBI	CCWGG	3 cut(s)	73, 945, 1442
BseDI	CCNNGG	5 cut(s)	72, 309, 603, 659, 944
BseLI	CCNNNNNNNGG	4 cut(s)	304, 609, 945, 1117
BseMI	GCAATG	2 cut(s)	509, 1415
BseMII	CTCAG	8 cut(s)	62, 153, 402, 666, 764, 869, 954, 1245
BseNI	ACTGG	2 cut(s)	904, 1312
BseXI	GCAGC	6 cut(s)	241, 454, 741, 1432, 1432, 1439
Bsh1236I	CGCG	2 cut(s)	346, 1150
BshFI	GGCC	4 cut(s)	93, 308, 314, 938
BshNI	GGYRCC	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	450
BsiSI	CCGG	3 cut(s)	56, 643, 1472
BslFI	GGGAC	2 cut(s)	89, 134
BslI	CCNNNNNNNGG	4 cut(s)	304, 609, 945, 1117
BsmFI	GGGAC	2 cut(s)	89, 134
BsmI	GAATGC	4 cut(s)	391, 482, 528, 1348
BsnI	GGCC	4 cut(s)	93, 308, 314, 938
Bsp119I	TTCGAA	1 cut(s)	909
Bsp1286I	GDGCHC	3 cut(s)	131, 450, 649
Bsp143I	GATC	4 cut(s)	434, 651, 871, 1310
Bsp1720I	GCTNAGC	1 cut(s)	703
Bsp19I	CCATGG	1 cut(s)	659
BspACI	CCGC	1 cut(s)	344
BspANI	GGCC	4 cut(s)	93, 308, 314, 938
BspCNI	CTCAG	8 cut(s)	61, 154, 403, 667, 763, 870, 955, 1244
BspFNI	CGCG	2 cut(s)	346, 1150
BspHI	TCATGA	1 cut(s)	1129
BspLI	GGNNCC	3 cut(s)	335, 672, 768
BspMAI	CTGCAG	1 cut(s)	1285
BspPI	GGATC	2 cut(s)	879, 1318
BspQI	GCTCTTC	2 cut(s)	33, 264
BspT104I	TTCGAA	1 cut(s)	909
BspT107I	GGYRCC	1 cut(s)	333
BsrDI	GCAATG	2 cut(s)	509, 1415
BsrI	ACTGG	2 cut(s)	904, 1312
BssECI	CCNNGG	5 cut(s)	72, 309, 603, 659, 944
BssMI	GATC	4 cut(s)	434, 651, 871, 1310
BssT1I	CCWWGG	3 cut(s)	309, 603, 659
Bst2UI	CCWGG	3 cut(s)	73, 945, 1442
Bst4CI	ACNGT	6 cut(s)	499, 548, 906, 995, 1120, 1242
Bst6I	CTCTTC	2 cut(s)	33, 264
BstAPI	GCANNNNNTGC	1 cut(s)	632
BstBI	TTCGAA	1 cut(s)	909
BstC8I	GCNNGC	6 cut(s)	709, 739, 936, 981, 1045, 1425
BstDEI	CTNAG	9 cut(s)	48, 162, 411, 675, 703, 750, 878, 963, 1231
BstDSI	CCRYGG	1 cut(s)	659
BstFNI	CGCG	2 cut(s)	346, 1150
BstKTI	GATC	4 cut(s)	437, 654, 874, 1313
BstMBI	GATC	4 cut(s)	434, 651, 871, 1310
BstMWI	GCNNNNNNNGC	2 cut(s)	632, 708
BstNI	CCWGG	3 cut(s)	73, 945, 1442
BstSCI	CCNGG	4 cut(s)	71, 642, 943, 1440
BstSFI	CTRYAG	1 cut(s)	1281
BstUI	CGCG	2 cut(s)	346, 1150
BstV1I	GCAGC	6 cut(s)	241, 454, 741, 1432, 1432, 1439
BstV2I	GAAGAC	1 cut(s)	90
BsuRI	GGCC	4 cut(s)	93, 308, 314, 938
BtgI	CCRYGG	1 cut(s)	659
BtsIMutI	CAGTG	4 cut(s)	402, 1000, 1019, 1238
Cac8I	GCNNGC	6 cut(s)	709, 739, 936, 981, 1045, 1425
CaiI	CAGNNNCTG	1 cut(s)	999
CciI	TCATGA	1 cut(s)	1129
Cfr13I	GGNCC	5 cut(s)	105, 600, 670, 767, 937
Csp6I	GTAC	3 cut(s)	973, 1182, 1305
CspCI	CAANNNNNGTGG	2 cut(s)	833, 868
CviAII	CATG	4 cut(s)	660, 1124, 1130, 1370
CviQI	GTAC	3 cut(s)	973, 1182, 1305
DdeI	CTNAG	9 cut(s)	48, 162, 411, 675, 703, 750, 878, 963, 1231
DpnI	GATC	4 cut(s)	436, 653, 873, 1312
DpnII	GATC	4 cut(s)	434, 651, 871, 1310
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	2 cut(s)	33, 264
EarI	CTCTTC	2 cut(s)	33, 264
Ecl136II	GAGCTC	1 cut(s)	448
Eco130I	CCWWGG	3 cut(s)	309, 603, 659
Eco24I	GRGCYC	3 cut(s)	131, 450, 649
Eco47I	GGWCC	4 cut(s)	105, 600, 670, 767
Eco53kI	GAGCTC	1 cut(s)	448
Eco57I	CTGAAG	4 cut(s)	245, 549, 1074, 1442
EcoICRI	GAGCTC	1 cut(s)	448
EcoO109I	RGGNCCY	1 cut(s)	937
EcoRII	CCWGG	3 cut(s)	71, 943, 1440
EcoT14I	CCWWGG	3 cut(s)	309, 603, 659
EcoT38I	GRGCYC	3 cut(s)	131, 450, 649
ErhI	CCWWGG	3 cut(s)	309, 603, 659
FaeI	CATG	4 cut(s)	663, 1127, 1133, 1373
FalI	AAGNNNNNCTT	6 cut(s)	474, 506, 691, 723, 726, 758
FaqI	GGGAC	2 cut(s)	89, 134
FatI	CATG	4 cut(s)	659, 1123, 1129, 1369
FauNDI	CATATG	1 cut(s)	1450
FbaI	TGATCA	1 cut(s)	651
Fnu4HI	GCNGC	6 cut(s)	255, 468, 755, 1421, 1428, 1446
FriOI	GRGCYC	3 cut(s)	131, 450, 649
Fsp4HI	GCNGC	6 cut(s)	255, 468, 755, 1421, 1428, 1446
FspBI	CTAG	3 cut(s)	207, 687, 1112
GluI	GCNGC	6 cut(s)	255, 468, 755, 1421, 1428, 1446
HaeIII	GGCC	4 cut(s)	93, 308, 314, 938
HapII	CCGG	3 cut(s)	56, 643, 1472
Hin1II	CATG	4 cut(s)	663, 1127, 1133, 1373
HindIII	AAGCTT	3 cut(s)	700, 1330, 1480
HinfI	GANTC	5 cut(s)	59, 164, 841, 857, 1384
HpaII	CCGG	3 cut(s)	56, 643, 1472
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	2 cut(s)	168, 1004
Hpy188I	TCNGA	8 cut(s)	113, 452, 651, 696, 862, 879, 1054, 1391
Hpy188III	TCNNGA	7 cut(s)	18, 235, 322, 491, 598, 617, 1130
Hpy8I	GTNNAC	2 cut(s)	168, 1004
HpyAV	CCTTC	5 cut(s)	447, 752, 950, 1127, 1403
HpyCH4III	ACNGT	6 cut(s)	499, 548, 906, 995, 1120, 1242
HpyCH4IV	ACGT	1 cut(s)	1184
HpyF10VI	GCNNNNNNNGC	2 cut(s)	632, 708
HpyF3I	CTNAG	9 cut(s)	48, 162, 411, 675, 703, 750, 878, 963, 1231
HpySE526I	ACGT	1 cut(s)	1184
Hsp92II	CATG	4 cut(s)	663, 1127, 1133, 1373
Ksp22I	TGATCA	1 cut(s)	651
Kzo9I	GATC	4 cut(s)	434, 651, 871, 1310
LguI	GCTCTTC	2 cut(s)	33, 264
LmnI	GCTCC	4 cut(s)	445, 591, 1094, 1474
Lsp1109I	GCAGC	6 cut(s)	241, 454, 741, 1432, 1432, 1439
LweI	GCATC	3 cut(s)	241, 360, 1278
MaeI	CTAG	3 cut(s)	207, 687, 1112
MaeII	ACGT	1 cut(s)	1184
MaeIII	GTNAC	2 cut(s)	895, 989
MalI	GATC	4 cut(s)	436, 653, 873, 1312
MboI	GATC	4 cut(s)	434, 651, 871, 1310
MboII	GAAGA	7 cut(s)	50, 90, 251, 542, 632, 806, 1025
MhlI	GDGCHC	3 cut(s)	131, 450, 649
MlsI	TGGCCA	1 cut(s)	308
MluNI	TGGCCA	1 cut(s)	308
MlyI	GAGTC	2 cut(s)	68, 173
MmeI	TCCRAC	1 cut(s)	794
Mox20I	TGGCCA	1 cut(s)	308
MroXI	GAANNNNTTC	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	2 cut(s)	293, 1337
MslI	CAYNNNNRTG	1 cut(s)	1128
Msp20I	TGGCCA	1 cut(s)	308
MspA1I	CMGCKG	2 cut(s)	754, 1462
MspI	CCGG	3 cut(s)	56, 643, 1472
MspR9I	CCNGG	4 cut(s)	73, 644, 945, 1442
Mva1269I	GAATGC	4 cut(s)	391, 482, 528, 1348
MvaI	CCWGG	3 cut(s)	73, 945, 1442
MvnI	CGCG	2 cut(s)	346, 1150
MwoI	GCNNNNNNNGC	2 cut(s)	632, 708
NciI	CCSGG	1 cut(s)	644
NcoI	CCATGG	1 cut(s)	659
NdeI	CATATG	1 cut(s)	1450
NdeII	GATC	4 cut(s)	434, 651, 871, 1310
NlaIII	CATG	4 cut(s)	663, 1127, 1133, 1373
NlaIV	GGNNCC	3 cut(s)	335, 672, 768
NmeAIII	GCCGAG	1 cut(s)	62
NspV	TTCGAA	1 cut(s)	909
PagI	TCATGA	1 cut(s)	1129
PciSI	GCTCTTC	2 cut(s)	33, 264
PctI	GAATGC	4 cut(s)	391, 482, 528, 1348
PdmI	GAANNNNTTC	1 cut(s)	564
PfeI	GAWTC	3 cut(s)	841, 857, 1384
PkrI	GCNGC	6 cut(s)	256, 469, 756, 1422, 1429, 1447
PleI	GAGTC	2 cut(s)	67, 172
PpsI	GAGTC	2 cut(s)	67, 172
Psp124BI	GAGCTC	1 cut(s)	450
Psp6I	CCWGG	3 cut(s)	71, 943, 1440
PspGI	CCWGG	3 cut(s)	71, 943, 1440
PspN4I	GGNNCC	3 cut(s)	335, 672, 768
PspPI	GGNCC	5 cut(s)	105, 600, 670, 767, 937
PstI	CTGCAG	1 cut(s)	1285
PstNI	CAGNNNCTG	1 cut(s)	999
PvuII	CAGCTG	2 cut(s)	754, 1462
RsaI	GTAC	3 cut(s)	974, 1183, 1306
RsaNI	GTAC	3 cut(s)	973, 1182, 1305
RseI	CAYNNNNRTG	1 cut(s)	1128
SacI	GAGCTC	1 cut(s)	450
SapI	GCTCTTC	2 cut(s)	33, 264
SaqAI	TTAA	2 cut(s)	293, 1337
SatI	GCNGC	6 cut(s)	255, 468, 755, 1421, 1428, 1446
Sau3AI	GATC	4 cut(s)	434, 651, 871, 1310
Sau96I	GGNCC	5 cut(s)	105, 600, 670, 767, 937
SchI	GAGTC	2 cut(s)	68, 173
ScrFI	CCNGG	4 cut(s)	73, 644, 945, 1442
SduI	GDGCHC	3 cut(s)	131, 450, 649
SfaNI	GCATC	3 cut(s)	241, 360, 1278
SfcI	CTRYAG	1 cut(s)	1281
SfuI	TTCGAA	1 cut(s)	909
SinI	GGWCC	4 cut(s)	105, 600, 670, 767
SmiMI	CAYNNNNRTG	1 cut(s)	1128
SmlI	CTYRAG	3 cut(s)	227, 425, 578
SmoI	CTYRAG	3 cut(s)	227, 425, 578
SsiI	CCGC	1 cut(s)	344
SspI	AATATT	1 cut(s)	420
SspMI	CTAG	3 cut(s)	207, 687, 1112
SstI	GAGCTC	1 cut(s)	450
StyD4I	CCNGG	4 cut(s)	71, 642, 943, 1440
StyI	CCWWGG	3 cut(s)	309, 603, 659
TaaI	ACNGT	6 cut(s)	499, 548, 906, 995, 1120, 1242
TaiI	ACGT	1 cut(s)	1187
TaqI	TCGA	7 cut(s)	101, 131, 321, 909, 930, 958, 1400
TfiI	GAWTC	3 cut(s)	841, 857, 1384
Tru1I	TTAA	2 cut(s)	293, 1337
Tru9I	TTAA	2 cut(s)	293, 1337
TscAI	CASTG	4 cut(s)	402, 1000, 1026, 1245
TseI	GCWGC	6 cut(s)	254, 467, 754, 1420, 1427, 1445
TspDTI	ATGAA	7 cut(s)	839, 1026, 1112, 1146, 1215, 1310, 1355
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	4 cut(s)	402, 1000, 1026, 1245
VpaK11BI	GGWCC	4 cut(s)	105, 600, 670, 767
XapI	RAATTY	6 cut(s)	32, 134, 244, 664, 1142, 1433
XmnI	GAANNNNTTC	1 cut(s)	564
XspI	CTAG	3 cut(s)	207, 687, 1112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.