Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004759

Physical Location & Seq

Genomic Coordinates Reverse (-)

51957296 .. 51967293

Gene Structure 9998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0373300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6408 bp

ATGTCAAAGTCTTCCTCCCCTGAACTACGGGAACCCGTGTCTTCTTCTACTTCTCGGTCTAGGGATTTAGATGAAACAACAATGGATGATGAAGAAGGTACAATGGCAAGTGTTGCTGAATTTGTCGAGAAACTACATGCCAGCATGTCTTCACCGCATGAAAAAGAACTTATTACAGCACGTTTGCTAGGTATTGCCAAAGCAAGGAAGGATGCAAGAACAATTATTGGTTCACATTCCCAGGCCATGCCATTGTTCATAAATATTCTGAGGAGTGGCACCCCTGTTGCAAAGGTTAATGTTGCGGCAACTCTGAGTGTCCTGTGTAAAGATGAAGACTTGCGTCTTAAAGTACTTCTAGGTGGGTGCATCCCCCCGTTACTCTCACTTTTGAAGTCCGAATCAACTCAGGCCAGGAAGGCTGCAGCCGAAGCTATATATGAAGTTTCCTCTGGTGGGCTTTCAGATGATCACGTTGGCGTAAAAATATTTATTACCGAAGGTGTTGTACCAAACTTGTGGAATCAGCTCAATCCAAACAGCAACCAGGACAAAGTGGTAGAGGGATTTGTGACAGGGGCTTTAAGAAATCTCTGTGGTGACAAGGATGGCTACTGGAGAGCAACACTTGAGGCTGGTGGAGTAGATATCACTGTGGGTCTCCTTTATTCTGACAATGTGGCTGCCCAGTCCAATGCTGCGTCCCTTTTGGCCCGTCTCATGTTGGCTTTCAGTGATAGCATCCCCAAAGTAATAGATTCTGGAGCTGTCAAAGCTTTGCTTCGGCTTGTGGGTCAAGAAAATAATGTTTCTGTTCGTGCTAGTGCTGCTGATGCTCTGGAAGCTCTTTCTTCAAAGTCAACTGGCGCTAAGAAAGCTATTGTTGATGCAAATGGTCTTCTAGTTCTGATTGGAGCTATTGTTGCTCCATCTAAGGAGTGCATGCAAGGTGAGTGCGGGCAGGCTCTCCAGGAGCATTCAACAAGGGCTTTAGCAAATATTTGTGGTGGGGTGTCTGCTTTAATACTTTATCTTGGAGAGCTTTCACAGTCAGCTCGCCTAGCTGCCCCAGTTGCTGATATTATTGGAGCTCTTGCATACACTTTAATGGTCTTTGAGCAAAAATCTGGTGATGGTAAGGAATCTTTTAAGGTAACAAAGATAGAGGATATTCTTGTAATGCTGCTAAAGCCTCGTGATAATAAGCTTGTTCAAGAGCGTGTCCTTGAGGCCATGGCTAGTCTATATGGCAACATTCATCTCTCAAAATGGCTCAATCATGCAGAAGCGAAGAAGGTGCTTATTGGACTTATAACAATGGCTGCTGCTGATGTACAAGAGTCTCTGATACTCTCTTTGACAAGCTTATGCTGTGATGGTGTTGGAATCTGGGAGTCCATTGGCGAGAGAGAAGGAATTCAGCTACTTATTTCATTGCTTGGCTTATCCAGTGAGCAGCATCAAGAATATGCTGTTCAGTTGCTAGGGATCTTAACTGACCAGGTTGATGACAGCAAGTGGGCTATTACTGCTGCTGGTGGGATTCCTCCTCTAGTGCAGTTGTTAGAGACGGGATCGCAAAAGGCGAAGGAGGACGCTGCTCATGTGTTGTGGAACTTGTGCTGTCACAGTGAGGATATTCGTGCATGTGTTGAAAGTGCAGGAGCCATTCCAGCATTTTTATGGCTTCTAAAAAGTGGTGGATCAAGGGGGCAAGAAGCATCAGCTATGGCACTTACAAAGCTTATCCAAACAGCCGATTCGGCTACCATTAATCAGTTGTTAGCTTTGCTCTTAGGTGACTCTCCATGCTCAAAGGCCCATACTATCAGGGTGTTGGGTCATGTACTCACAATGGCATCACACAAGGATCTTGTGCATAAGGGTTCGGCAGCTAATAAAGGGTTGAGGTCTCTCGTTCAGGTTCTCAACTCATCAAATGAAGAAACTCAAGAGTATGCCGCGTCTGTCTTAGCTGATCTATTCAGCATGAGACAAGATATTTGTGACACTCTTGCAACTGATGAGATCGTGCATCCTTGCATGAAGCTTTTGACCAGCAGCACACAAGCTGTTGCAACACAGTCGGCTCGAGCTTTGGGTGCTCTTTCCCGTCCTATGAAGACCAAAACAATAAGCAAGATGTCTTATATTGCAGAAGGGGATGTTAAACCCCTCATCAAACTAGCAAAAACTTCTTCAATTGATGCTGCTCAAACTGCAGTTGCTGCACTCGCCAATCTTCTCTCTGATCCCCAGATTGCTGCAGAAGCCCTGGCAGAAGATGTTGTTTCAGCTTTGATAAGAGTACTGGGAGATGGAACTACAGAAGGTAAAAAGAATGCATCCCGTGCCCTTCATCAATTGTTGAAGCATTTTCCAGTAGGTGATGTGCTCACAGGAAATGCTCATTGCCGTTTTGCTATTCTTGCTGTTGTTGATTCCTTAAATGCATTGGATATGGATGAGACTGATGCTGCTGATGCTTTAGAAGTAGTAGCACTTTTGGCCAGAACCAAACAGGGTGTGAACTTCACTTACCCTCCATGGTCTGTATTTGCTGAAGTTGAATCGAGCTTAGAACCTCTTGTCCGCTGTCTGGCCGAAGGGTCTCCTTTGCTTCAGGATAAGGCAATAGAAGTTTTGTCTAGGCTTTGCGGGGAGCAACCAGTTGTGCTTGGTGATCTATTGATTGCAAGATCTGGATCCCTTGGTTCACTAGCTAACAGAATAATGAACTCATCTAGTTTAGAAGTCAGAGTTGGAGGAGCTGCATTACTCATTTGTGCAGCAAAAGAGCACAAAGAGCAGTGGATGGAAGTACTTGAGGTGTCAGGATATTTAAAACCATTAATGTATGCTTTAGTGGATATGATGAAGCAAAATTGTAGCTGCTCCTCTTTAGAAATTGAAGTCCGAACTTCTAAAGCTTTTATGGAAAGAACTGCATTCCACGAAGGGGATGAGTTTGATGCCCCTGATCCAGCCATTGTCTTGGGGGGTACTGTTGCTTTGTGGTTGCTATGTATAATTGGTTCCTGTAATGCAAAGAGCAAACTCACCATTATGGAAGCCGGAGGTCTTGAGGCTCTCTGTGACAAGCTTGAGAGCCACACTTCCAATCCACAGGCAGATTATGAGGATACTGAAGGTATATGGATTAGTGCCCTGCTTCTGGCTATTCTCTTCCAAGATGCCAATGTCATTTCATCTCCTACAACAATGCGGATCATAGCTTCTCTTGCGCTTCTGCTGAGATCAGATGAGGTGATTGATAGGTTCTTTGCTGCCCAGTCAATGGCCAGTCTTGTTTGCAGTGGTAATAAGGGAATAATTCTTGCCATTGCAAATTCAGGTGCTGTTGCTGGATTGATAACCCTCATTGGTTACGTAGAATCTGATATGCCTAACCTTGTTACTTTATCAGAAGAGTTTTCTCTGGTGCGAAACCCTGATCAAGTTGTTTTGGAATACCTTTTTGATTTTGAAGATGTAAGAGTTGGATCCACAGCACGCAAATCTATACCTCTCTTGGTGGATCTCTTGAGACCAATGCCAGATAGACCTGGTGCCCCCCCAGTTGCTCTTAAACTCTTGACCTGTATTGCTGATGGAAGTGATACAAACAAATTAGTCATGGCTGAAGCTGGAGCTCTGGACGCTCTGACAAAGTACCTGTCTTTGAGCCCACAAGATTCAACTGAAGCTGCAATATCTGATTTATTCAGAATATTGTTTAGCCATCCTGATCTGATTCGCTATGAAGCATCAGCTAGTTCGTTGAATCAGCTCATAGCTGTTCTGCGTCTGGGGTCAAGAAATGCTAGATACAGTGCTGCAAGAGCTCTTCATGAACTATTTGATGCTGAGAACATCAGAGATTCTGATTTAGCCAGGCAATCTGTTCAGCCATTGGTTGACATGCTTAACGCCGCATCAGAGAATGAACAAGAGGCTGCTCTTGTTGCTGTAATTAAGCTGACTTCCGGAAATTCTTCTAGTGCAGCTTTGTTGACTGATGTGGAGGGAAATCCACTGGAGAGTTTATTTAAAATATTGTCTTCTGCTTCATCCTTGGATTTGAAGAGACTTGCTGCACAACTATGTTGTGTACTGTTTGATAGTACCAAAGTCAGAGGAAATCCAATTGCCTCCGAATGTATAGAGCCTCTTATTTCCTTGATGCTTTCTGGTATAAATGCAGCTGTAGAAGCTGGGGTTTGTGCCTTTGAAAAATTGTTGGATGATGAACACCAGGTAGAGCTTGCAGTGAACTATAATGTTGTCGATCTTCTTGTTGGATTAGTTTCTGGTACGAACAGTCAGCTCATTGAGGCTAGCATCTGCTCTCTCATAAAGTTGGGGAAAGACCGGACCCAATGCAAATCGGATATGATCAATGCTGGCATTATTGATAACTGTCTTGAGCTACTCCCTGTTGCAGCCAGTTCATTATGCTCTTCTATTGCTGAATTATTTCGCATTTTGACAAACAGTGATGCAATTGCTAGAAGTTCAGCTGCTGCAACAATTGTAGAACCCCTTTTCCTAGTTTTACTTCGTCCAGATTTCAGTATGTGGGGACAGCACAGTGCATTGCAAGCACTAGTAAATATTTTGGAGAAGCCACAAAGCCTTGCCACTTTAAAACTTACGCCTAGCCAAGTCATTGAGCCTCTGATTTCATTTCTTGAATCCCCATCTCTAGCCATCCAGCAGCTTGGTACAGAATTGCTATCTCATCTTCTTGCACAAGAACATTTTCAGCAAGATATTACAACAAAAAATGCTGTTGTTCCTCTTGTGCAACTTGCGGGAATTGGAATACTGAACTTACAGCAAACAGCGATAAAGGCATTGGAAAAAATATCCACAAGATGGCCAAAGGCAGTTGCTGATGCTGGAGGTATTTTTGAGCTTGGAAAGGTTATTATACAAGATGATCCTCAGCCACCTCATGCATTGTGGGAATCAGCTGCTTTAGTTCTCTCAAATGTTTTGTGCTTCAATGCTGAGTACTACTTTAAGGTTCCTGTGGTGGTTCTTGTTAAAATGTTGCATTCAACAGTGGATAGCACTATTACGGTGGCTCTCAATGCACTACTTGTTCATGAAAGGAGTGATAAGCTAAGTGCTGAACAGATGACTGAAAATGGTGCTATAGATGCCTTGTTGGACCTTTTAACATCTCATCAGTGTGAAGAAGCATCTGGAAGGTTACTTGAAGCGTTATTCAACAATGTCAGGATACGAGCAATGAAGGTTTCCAAGTATGCAATAGCACCTTTATCACAGTATCTGTTGGATTCACAAACCAAATCACAATCTGGAAAACTTCTCGTAGCTCTAGCTCTTGGAGACCTTTCCCAACACGAAGGGCTTGCTAGAGCCAGTGATTCTGTTTCTGCATGTCGGGCATTAATAAGTTTGCTTGAAGATCAGCCCACAGAAGATATGAAAATGGTGGCAACTTGTGCATTGCAAAATTTTGTCATGAACAGCCGAACGAATCGGCGTGCTGTCGCAGAAGCAGGGGGAATACTGGTTATTCAAGAACTACTACTGTCTCTCAATGCAGAAGTTGCTGGGCAAGCAGCGTTGCTTATCAAATTTTTGTTTTCTAATCACACACTTCAAGAATATGTGTCAAACGAGCTCATCAGATCTTTGACAGCCGCATTAGAGAGAGAGTTGTGGTCCACAGCAACTATTAATGAAGAGGTGTTGAGAGCCCTACATATGATATTTACCAACTTTCCTAAGCTCCATATTTCCGAGGCAGCCACTCTCTGCATTCCCAATCTTATTGGAGCCCTTAAATCTGGCAGTGAGGCAGCTCAGGATGTCGTGTTGGACACCCTTTGCTTGTTGAGACATTCTTGGTCAACCATGCCAATAGATATTGCAAAGTCTCAATCTGTGGTTGCTGCTGAAGCCATTCCCATCTTACAAATGCTTATGAAAACCTGCCCACCAAGTTTCCATGAGAGAGCAGACAGCCTGTTGCATTGCTTACCAGGTTGTTTGACTGTTACAATCAAGCGTGGAAACAACCTTAAACAGGCTATGGGAGGCACAAATGCTTTTTGCCGATTGACAATAGGCAACGGTCCTCCTCGACAAACCAAGGTAGTGAGCCACAGTACTTCTCCCGAATGGAAAGAAGGGTTTACGTGGGCATTTGATGTGCCCCCGAAGGGACAAAAGCTCCACATCATCTGCAAAAGCAAAAATACCTTTGGAAAGTCAACACTGGGGAGAGTGACTATCCAGATCGATAAAGTTGTGTCAGAAGGAGTATACAGTGGATTATTCAGCCTAAACCATGACAACAACAAAGATGGATCTTCACGTACACTAGAAATCGAGATTATCTGGTCCAACAGCATGCCCGATGATGAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016310 GO:0019637 GO:0030258 GO:0033036 GO:0034613 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0051179 GO:0051641 GO:0070727 GO:0071704 GO:0071944 GO:0072657 GO:0072659 GO:1990778

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_8

Protein Analysis

2135

Amino Acids

228.94

Weight (kDa)

5.21

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_PUB	PF25598	67 - 288	9.9e-06	Plant U-box protein ARM repeat region
ARM_ARMC5	PF24768	380 - 571	2.7e-07	ARMC5
Arm	PF00514	504 - 541	2.6e-06	Armadillo/beta-catenin-like repeat
ARM_ARMC5	PF24768	611 - 784	1.4e-07	ARMC5
ARM_ARMC5	PF24768	1261 - 1395	9.7e-06	ARMC5
C2	PF00168	2008 - 2106	5.7e-13	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27460 AT1G27460 AT1G27460
fragaria_vesca	FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080
malus_domestica	MD15G1069300.v1.1
prunus_persica	Prupe.1G422800_v2.0.a1 Prupe.1G422800_v2.0.a1 Prupe.1G422800_v2.0.a1
pyrus_communis	pycom08g06750 pycom15g06540
rosa_chinensis	RchiOBHm_Chr6g0309631
rosa_laevigata	RLG00000010548
rosa_multiflora	Rmu_co8186100.1_g000001 Rmu_sc0007632.1_g000005 Rmu_sc0008462.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159270
rosa_rugosa	Rorug06G0373200 Rorug06G0373300
rosa_samantha	Rh6AG486900 Rh6BG496500 Rh6CG501200 Rh6DG487400
rosa_wichuraiana	Rw6G042410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1313
Acc36I	ACCTGC	1 cut(s)	5975
AccB1I	GGYRCC	2 cut(s)	278, 3569
AccB7I	CCANNNNNTGG	2 cut(s)	3298, 4878
AccI	GTMKAC	1 cut(s)	6300
AccII	CGCG	1 cut(s)	1964
AccIII	TCCGGA	1 cut(s)	3986
AcoI	YGGCCR	4 cut(s)	2508, 2601, 3300, 4880
AcsI	RAATTY	6 cut(s)	119, 1416, 3349, 3991, 5485, 5609
AcuI	CTGAAG	6 cut(s)	2583, 2606, 3168, 3663, 3723, 5952
AfiI	CCNNNNNNNGG	9 cut(s)	204, 456, 2599, 2959, 3175, 3298, 4878, 6061, 6197
AhlI	ACTAGT	1 cut(s)	4606
AjuI	GAANNNNNNNTTGG	2 cut(s)	2745, 2777
AloI	GAACNNNNNNTCC	4 cut(s)	2574, 2606, 4530, 4562
Alw21I	GWGCWC	7 cut(s)	1093, 2107, 2397, 2802, 3655, 3847, 5658
AlwNI	CAGNNNCTG	6 cut(s)	1076, 2228, 3359, 4523, 4895, 5299
Ama87I	CYCGRG	1 cut(s)	2091
Aor13HI	TCCGGA	1 cut(s)	3986
AoxI	GGCC	9 cut(s)	243, 411, 711, 1230, 1818, 2508, 2601, 3300, 4880
ApoI	RAATTY	6 cut(s)	119, 1416, 3349, 3991, 5485, 5609
ArsI	GACNNNNNNTTYG	4 cut(s)	1986, 2018, 3662, 3694
AseI	ATTAAT	4 cut(s)	1773, 2852, 5420, 5712
Asp700I	GAANNNNTTC	5 cut(s)	1416, 3994, 4476, 4761, 5937
AspLEI	GCGC	2 cut(s)	869, 3247
AspS9I	GGNCC	7 cut(s)	712, 1819, 4374, 5176, 5697, 6110, 6378
AsuHPI	GGTGA	9 cut(s)	144, 611, 962, 1142, 1811, 2399, 2693, 3052, 3280
AsuNHI	GCTAGC	1 cut(s)	4337
AvaI	CYCGRG	1 cut(s)	2091
AvaII	GGWCC	5 cut(s)	4374, 5176, 5697, 6110, 6378
BaeGI	GKGCMC	4 cut(s)	2356, 3169, 3574, 6192
BalI	TGGCCA	3 cut(s)	2510, 3302, 4882
BamHI	GGATCC	2 cut(s)	2705, 3503
BanI	GGYRCC	2 cut(s)	278, 3569
BanII	GRGCYC	7 cut(s)	1093, 3655, 3689, 3847, 5658, 5734, 5815
BarI	GAAGNNNNNNTAC	2 cut(s)	492, 524
BauI	CACGAG	1 cut(s)	1194
BbsI	GAAGAC	7 cut(s)	3, 33, 141, 342, 890, 2129, 4053
Bbv12I	GWGCWC	7 cut(s)	1093, 2107, 2397, 2802, 3655, 3847, 5658
BbvCI	CCTCAGC	1 cut(s)	4947
BceAI	ACGGC	1 cut(s)	2400
BcgI	CGANNNNNNTGC	6 cut(s)	1279, 1313, 2067, 2101, 5363, 5397
BciVI	GTATCC	2 cut(s)	3136, 5241
BclI	TGATCA	3 cut(s)	469, 3454, 4395
BcuI	ACTAGT	1 cut(s)	4606
BfmI	CTRYAG	6 cut(s)	423, 2220, 2265, 2325, 4206, 5160
BfoI	RGCGCY	1 cut(s)	870
BfuAI	ACCTGC	1 cut(s)	5975
BfuI	GTATCC	2 cut(s)	3136, 5241
BglI	GCCNNNNNGGC	2 cut(s)	419, 1763
BglII	AGATCT	2 cut(s)	2699, 5663
BmcAI	AGTACT	5 cut(s)	354, 2310, 2823, 5018, 6145
Bme18I	GGWCC	5 cut(s)	4374, 5176, 5697, 6110, 6378
BmeT110I	CYCGRG	1 cut(s)	2091
BmgT120I	GGNCC	7 cut(s)	712, 1819, 4374, 5176, 5697, 6110, 6378
BmrI	ACTGGG	6 cut(s)	682, 1064, 2321, 3286, 3572, 6263
BmtI	GCTAGC	1 cut(s)	4341
BmuI	ACTGGG	6 cut(s)	682, 1064, 2321, 3286, 3572, 6263
BoxI	GACNNNNGTC	1 cut(s)	342
BpiI	GAAGAC	7 cut(s)	3, 33, 141, 342, 890, 2129, 4053
BpmI	CTGGAG	6 cut(s)	637, 783, 953, 3669, 4058, 4923
Bpu10I	CCTNAGC	3 cut(s)	4947, 5760, 5838
BpuEI	CTTGAG	8 cut(s)	650, 1247, 1935, 2846, 3104, 3125, 3565, 4445
Bsa29I	ATCGAT	1 cut(s)	6276
BsaAI	YACGTR	3 cut(s)	3391, 6174, 6353
BsaBI	GATNNNNATC	1 cut(s)	2704
BsaI	GGTCTC	5 cut(s)	665, 1917, 2616, 3541, 5352
BsaJI	CCNNGG	8 cut(s)	240, 1233, 2274, 2546, 2710, 4074, 5775, 6126
BsaWI	WCCGGW	2 cut(s)	3986, 4371
BsaXI	ACNNNNNCTCC	6 cut(s)	906, 936, 2527, 2557, 6192, 6222
Bsc4I	CCNNNNNNNGG	9 cut(s)	204, 456, 2599, 2959, 3175, 3298, 4878, 6061, 6197
Bse3DI	GCAATG	7 cut(s)	1433, 2410, 3342, 4595, 5262, 5477, 6007
Bse8I	GATNNNNATC	1 cut(s)	2704
BseAI	TCCGGA	1 cut(s)	3986
BseCI	ATCGAT	1 cut(s)	6276
BseDI	CCNNGG	8 cut(s)	240, 1233, 2274, 2546, 2710, 4074, 5775, 6126
BseJI	GATNNNNATC	1 cut(s)	2704
BseLI	CCNNNNNNNGG	9 cut(s)	204, 456, 2599, 2959, 3175, 3298, 4878, 6061, 6197
BseMI	GCAATG	7 cut(s)	1433, 2410, 3342, 4595, 5262, 5477, 6007
BseMII	CTCAG	8 cut(s)	260, 305, 422, 3245, 3858, 4961, 5004, 5852
BseRI	GAGGAG	5 cut(s)	286, 1539, 2781, 2887, 6105
BseSI	GKGCMC	4 cut(s)	2356, 3169, 3574, 6192
BseYI	CCCAGC	2 cut(s)	4214, 5585
BsgI	GTGCAG	6 cut(s)	1577, 1680, 2214, 2808, 4023, 4080
Bsh1236I	CGCG	1 cut(s)	1964
BshFI	GGCC	9 cut(s)	245, 413, 713, 1232, 1820, 2510, 2603, 3302, 4882
BshNI	GGYRCC	2 cut(s)	278, 3569
BshVI	ATCGAT	1 cut(s)	6276
BsiHKAI	GWGCWC	7 cut(s)	1093, 2107, 2397, 2802, 3655, 3847, 5658
BsiHKCI	CYCGRG	1 cut(s)	2091
BsiSI	CCGG	3 cut(s)	3075, 3987, 4372
BslFI	GGGAC	3 cut(s)	688, 4596, 6213
BslI	CCNNNNNNNGG	9 cut(s)	204, 456, 2599, 2959, 3175, 3298, 4878, 6061, 6197
BsmBI	CGTCTC	2 cut(s)	722, 1562
BsmFI	GGGAC	3 cut(s)	688, 4596, 6213
BsmI	GAATGC	5 cut(s)	976, 2347, 2948, 5059, 5793
BsnI	GGCC	9 cut(s)	245, 413, 713, 1232, 1820, 2510, 2603, 3302, 4882
Bso31I	GGTCTC	5 cut(s)	665, 1917, 2616, 3541, 5352
BsoBI	CYCGRG	1 cut(s)	2091
Bsp13I	TCCGGA	1 cut(s)	3986
Bsp1407I	TGTACA	1 cut(s)	1333
Bsp19I	CCATGG	2 cut(s)	1233, 2546
BspANI	GGCC	9 cut(s)	245, 413, 713, 1232, 1820, 2510, 2603, 3302, 4882
BspCNI	CTCAG	8 cut(s)	261, 306, 421, 3246, 3859, 4960, 5005, 5851
BspDI	ATCGAT	1 cut(s)	6276
BspEI	TCCGGA	1 cut(s)	3986
BspFNI	CGCG	1 cut(s)	1964
BspHI	TCATGA	3 cut(s)	3850, 5110, 5493
BspMAI	CTGCAG	3 cut(s)	427, 2224, 2269
BspMI	ACCTGC	1 cut(s)	5975
BspOI	GCTAGC	1 cut(s)	4341
BspQI	GCTCTTC	2 cut(s)	3852, 4465
BspT107I	GGYRCC	2 cut(s)	278, 3569
BspTNI	GGTCTC	5 cut(s)	665, 1917, 2616, 3541, 5352
BsrDI	GCAATG	7 cut(s)	1433, 2410, 3342, 4595, 5262, 5477, 6007
BsrGI	TGTACA	1 cut(s)	1333
BssECI	CCNNGG	8 cut(s)	240, 1233, 2274, 2546, 2710, 4074, 5775, 6126
BssNAI	GTATAC	1 cut(s)	6301
BssSI	CACGAG	1 cut(s)	1194
BssT1I	CCWWGG	5 cut(s)	1233, 2546, 2710, 4074, 6126
Bst1107I	GTATAC	1 cut(s)	6301
Bst2BI	CACGAG	1 cut(s)	1194
Bst6I	CTCTTC	6 cut(s)	3191, 3423, 3852, 4079, 4465, 5712
BstAPI	GCANNNNNTGC	5 cut(s)	113, 2228, 2351, 5474, 5582
BstAUI	TGTACA	1 cut(s)	1333
BstBAI	YACGTR	3 cut(s)	3391, 6174, 6353
BstDSI	CCRYGG	2 cut(s)	1233, 2546
BstENI	CCTNNNNNAGG	1 cut(s)	6059
BstFNI	CGCG	1 cut(s)	1964
BstH2I	RGCGCY	1 cut(s)	870
BstHHI	GCGC	2 cut(s)	869, 3247
BstNSI	RCATGY	7 cut(s)	140, 148, 946, 1650, 3925, 5412, 6391
BstPAI	GACNNNNGTC	1 cut(s)	342
BstSFI	CTRYAG	6 cut(s)	423, 2220, 2265, 2325, 4206, 5160
BstSLI	GKGCMC	4 cut(s)	2356, 3169, 3574, 6192
BstSNI	TACGTA	1 cut(s)	3391
BstUI	CGCG	1 cut(s)	1964
BstV2I	GAAGAC	7 cut(s)	3, 33, 141, 342, 890, 2129, 4053
BstX2I	RGATCY	8 cut(s)	1488, 1870, 2699, 2705, 3503, 3538, 5663, 6344
BstXI	CCANNNNNNTGG	3 cut(s)	519, 2995, 4721
BstYI	RGATCY	8 cut(s)	1488, 1870, 2699, 2705, 3503, 3538, 5663, 6344
BstZ17I	GTATAC	1 cut(s)	6301
Bsu15I	ATCGAT	1 cut(s)	6276
BsuI	GTATCC	2 cut(s)	3136, 5241
BsuRI	GGCC	9 cut(s)	245, 413, 713, 1232, 1820, 2510, 2603, 3302, 4882
BsuTUI	ATCGAT	1 cut(s)	6276
BtgI	CCRYGG	2 cut(s)	1233, 2546
BtsI	GCAGTG	4 cut(s)	2816, 3322, 4275, 5833
BveI	ACCTGC	1 cut(s)	5975
CaiI	CAGNNNCTG	6 cut(s)	1076, 2228, 3359, 4523, 4895, 5299
CciI	TCATGA	3 cut(s)	3850, 5110, 5493
CfoI	GCGC	2 cut(s)	869, 3247
Cfr13I	GGNCC	7 cut(s)	712, 1819, 4374, 5176, 5697, 6110, 6378
ClaI	ATCGAT	1 cut(s)	6276
CseI	GACGC	6 cut(s)	332, 690, 1604, 1953, 3668, 3794
CsiI	ACCWGGT	4 cut(s)	1500, 3565, 4254, 6016
DraI	TTTAAA	3 cut(s)	2844, 4051, 4647
EaeI	YGGCCR	4 cut(s)	2508, 2601, 3300, 4880
Eam1104I	CTCTTC	6 cut(s)	3191, 3423, 3852, 4079, 4465, 5712
EarI	CTCTTC	6 cut(s)	3191, 3423, 3852, 4079, 4465, 5712
Ecl136II	GAGCTC	4 cut(s)	1091, 3653, 3845, 5656
Eco105I	TACGTA	1 cut(s)	3391
Eco130I	CCWWGG	5 cut(s)	1233, 2546, 2710, 4074, 6126
Eco24I	GRGCYC	7 cut(s)	1093, 3655, 3689, 3847, 5658, 5734, 5815
Eco31I	GGTCTC	5 cut(s)	665, 1917, 2616, 3541, 5352
Eco32I	GATATC	1 cut(s)	649
Eco47I	GGWCC	5 cut(s)	4374, 5176, 5697, 6110, 6378
Eco53kI	GAGCTC	4 cut(s)	1091, 3653, 3845, 5656
Eco57I	CTGAAG	6 cut(s)	2583, 2606, 3168, 3663, 3723, 5952
Eco88I	CYCGRG	1 cut(s)	2091
EcoICRI	GAGCTC	4 cut(s)	1091, 3653, 3845, 5656
EcoNI	CCTNNNNNAGG	1 cut(s)	6059
EcoRI	GAATTC	1 cut(s)	1416
EcoRV	GATATC	1 cut(s)	649
EcoT14I	CCWWGG	5 cut(s)	1233, 2546, 2710, 4074, 6126
EcoT22I	ATGCAT	3 cut(s)	2347, 2455, 4963
EcoT38I	GRGCYC	7 cut(s)	1093, 3655, 3689, 3847, 5658, 5734, 5815
ErhI	CCWWGG	5 cut(s)	1233, 2546, 2710, 4074, 6126
Esp3I	CGTCTC	2 cut(s)	722, 1562
FalI	AAGNNNNNCTT	2 cut(s)	765, 797
FaqI	GGGAC	3 cut(s)	688, 4596, 6213
FauI	CCCGC	3 cut(s)	950, 2651, 4807
FauNDI	CATATG	1 cut(s)	5739
FbaI	TGATCA	3 cut(s)	469, 3454, 4395
FblI	GTMKAC	1 cut(s)	6300
FriOI	GRGCYC	7 cut(s)	1093, 3655, 3689, 3847, 5658, 5734, 5815
GlaI	GCGC	2 cut(s)	868, 3246
GsaI	CCCAGC	2 cut(s)	4218, 5589
GsuI	CTGGAG	6 cut(s)	637, 783, 953, 3669, 4058, 4923
HaeII	RGCGCY	1 cut(s)	870
HaeIII	GGCC	9 cut(s)	245, 413, 713, 1232, 1820, 2510, 2603, 3302, 4882
HapII	CCGG	3 cut(s)	3075, 3987, 4372
HgaI	GACGC	6 cut(s)	332, 690, 1604, 1953, 3668, 3794
HhaI	GCGC	2 cut(s)	869, 3247
Hin6I	GCGC	2 cut(s)	867, 3245
HinP1I	GCGC	2 cut(s)	867, 3245
HincII	GTYRAC	5 cut(s)	861, 3919, 4014, 5886, 6249
HindII	GTYRAC	5 cut(s)	861, 3919, 4014, 5886, 6249
HindIII	AAGCTT	7 cut(s)	774, 1205, 1363, 1742, 2048, 2928, 3101
HpaII	CCGG	3 cut(s)	3075, 3987, 4372
HphI	GGTGA	9 cut(s)	144, 611, 962, 1142, 1811, 2399, 2693, 3052, 3280
HpyCH4IV	ACGT	5 cut(s)	181, 474, 3390, 6173, 6352
HpySE526I	ACGT	5 cut(s)	181, 474, 3390, 6173, 6352
HspAI	GCGC	2 cut(s)	867, 3245
Kpn2I	TCCGGA	1 cut(s)	3986
Ksp22I	TGATCA	3 cut(s)	469, 3454, 4395
LguI	GCTCTTC	2 cut(s)	3852, 4465
MabI	ACCWGGT	4 cut(s)	1500, 3565, 4254, 6016
MaeII	ACGT	5 cut(s)	181, 474, 3390, 6173, 6352
MfeI	CAATTG	5 cut(s)	2202, 2363, 4146, 4503, 4530
MflI	RGATCY	8 cut(s)	1488, 1870, 2699, 2705, 3503, 3538, 5663, 6344
MlsI	TGGCCA	3 cut(s)	2510, 3302, 4882
MluNI	TGGCCA	3 cut(s)	2510, 3302, 4882
MlyI	GAGTC	3 cut(s)	1349, 1403, 1796
MmeI	TCCRAC	9 cut(s)	1363, 2743, 3481, 4221, 4279, 5154, 5283, 5832, 6405
Mox20I	TGGCCA	3 cut(s)	2510, 3302, 4882
Mph1103I	ATGCAT	3 cut(s)	2347, 2455, 4963
MroI	TCCGGA	1 cut(s)	3986
MroXI	GAANNNNTTC	5 cut(s)	1416, 3994, 4476, 4761, 5937
MscI	TGGCCA	3 cut(s)	2510, 3302, 4882
MslI	CAYNNNNRTG	5 cut(s)	1106, 1681, 3065, 4102, 5196
Msp20I	TGGCCA	3 cut(s)	2510, 3302, 4882
MspA1I	CMGCKG	4 cut(s)	2595, 4205, 4520, 4976
MspI	CCGG	3 cut(s)	3075, 3987, 4372
MunI	CAATTG	5 cut(s)	2202, 2363, 4146, 4503, 4530
Mva1269I	GAATGC	5 cut(s)	976, 2347, 2948, 5059, 5793
MvnI	CGCG	1 cut(s)	1964
NcoI	CCATGG	2 cut(s)	1233, 2546
NdeI	CATATG	1 cut(s)	5739
NheI	GCTAGC	1 cut(s)	4337
NmuCI	GTSAC	7 cut(s)	571, 599, 1625, 1799, 2006, 3095, 6262
NsiI	ATGCAT	3 cut(s)	2347, 2455, 4963
NspI	RCATGY	7 cut(s)	140, 148, 946, 1650, 3925, 5412, 6391
PaeI	GCATGC	2 cut(s)	946, 6391
PaeR7I	CTCGAG	1 cut(s)	2091
PagI	TCATGA	3 cut(s)	3850, 5110, 5493
PciSI	GCTCTTC	2 cut(s)	3852, 4465
PcsI	WCGNNNNNNNCGW	1 cut(s)	1583
PctI	GAATGC	5 cut(s)	976, 2347, 2948, 5059, 5793
PdmI	GAANNNNTTC	5 cut(s)	1416, 3994, 4476, 4761, 5937
PflMI	CCANNNNNTGG	2 cut(s)	3298, 4878
PfoI	TCCNGGA	1 cut(s)	969
PleI	GAGTC	3 cut(s)	1348, 1402, 1796
PpsI	GAGTC	3 cut(s)	1348, 1402, 1796
Ppu21I	YACGTR	3 cut(s)	3391, 6174, 6353
PshAI	GACNNNNGTC	1 cut(s)	342
PshBI	ATTAAT	4 cut(s)	1773, 2852, 5420, 5712
PsiI	TTATAA	1 cut(s)	1313
Psp124BI	GAGCTC	4 cut(s)	1093, 3655, 3847, 5658
PspFI	CCCAGC	2 cut(s)	4214, 5585
PspPI	GGNCC	7 cut(s)	712, 1819, 4374, 5176, 5697, 6110, 6378
PspXI	VCTCGAGB	1 cut(s)	2091
PsrI	GAACNNNNNNTAC	4 cut(s)	2522, 2554, 3019, 3051
PstI	CTGCAG	3 cut(s)	427, 2224, 2269
PstNI	CAGNNNCTG	6 cut(s)	1076, 2228, 3359, 4523, 4895, 5299
PsuI	RGATCY	8 cut(s)	1488, 1870, 2699, 2705, 3503, 3538, 5663, 6344
PvuII	CAGCTG	3 cut(s)	4205, 4520, 4976
RseI	CAYNNNNRTG	5 cut(s)	1106, 1681, 3065, 4102, 5196
SacI	GAGCTC	4 cut(s)	1093, 3655, 3847, 5658
SapI	GCTCTTC	2 cut(s)	3852, 4465
Sau96I	GGNCC	7 cut(s)	712, 1819, 4374, 5176, 5697, 6110, 6378
ScaI	AGTACT	5 cut(s)	354, 2310, 2823, 5018, 6145
SchI	GAGTC	3 cut(s)	1349, 1403, 1796
SexAI	ACCWGGT	4 cut(s)	1500, 3565, 4254, 6016
SfcI	CTRYAG	6 cut(s)	423, 2220, 2265, 2325, 4206, 5160
Sfr274I	CTCGAG	1 cut(s)	2091
SinI	GGWCC	5 cut(s)	4374, 5176, 5697, 6110, 6378
SlaI	CTCGAG	1 cut(s)	2091
SmiMI	CAYNNNNRTG	5 cut(s)	1106, 1681, 3065, 4102, 5196
SmlI	CTYRAG	9 cut(s)	629, 1226, 1950, 2091, 2825, 3083, 3104, 3544, 4424
SmoI	CTYRAG	9 cut(s)	629, 1226, 1950, 2091, 2825, 3083, 3104, 3544, 4424
SnaBI	TACGTA	1 cut(s)	3391
SpeI	ACTAGT	1 cut(s)	4606
SphI	GCATGC	2 cut(s)	946, 6391
SspI	AATATT	6 cut(s)	265, 489, 1000, 3732, 4056, 4615
SstI	GAGCTC	4 cut(s)	1093, 3655, 3847, 5658
StyI	CCWWGG	5 cut(s)	1233, 2546, 2710, 4074, 6126
TaiI	ACGT	5 cut(s)	184, 477, 3393, 6176, 6355
TaqI	TCGA	7 cut(s)	126, 2092, 2573, 4287, 6118, 6276, 6366
TaqII	GACCGA	1 cut(s)	45
TatI	WGTACW	8 cut(s)	352, 1333, 1846, 2308, 2821, 4111, 5016, 6143
TauI	GCSGC	4 cut(s)	308, 1964, 3935, 5678
TseFI	GTSAC	7 cut(s)	571, 599, 1625, 1799, 2006, 3095, 6262
Tsp45I	GTSAC	7 cut(s)	571, 599, 1625, 1799, 2006, 3095, 6262
Van91I	CCANNNNNTGG	2 cut(s)	3298, 4878
VpaK11BI	GGWCC	5 cut(s)	4374, 5176, 5697, 6110, 6378
VspI	ATTAAT	4 cut(s)	1773, 2852, 5420, 5712
XagI	CCTNNNNNAGG	1 cut(s)	6059
XapI	RAATTY	6 cut(s)	119, 1416, 3349, 3991, 5485, 5609
XceI	RCATGY	7 cut(s)	140, 148, 946, 1650, 3925, 5412, 6391
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1680
XhoI	CTCGAG	1 cut(s)	2091
XmiI	GTMKAC	1 cut(s)	6300
XmnI	GAANNNNTTC	5 cut(s)	1416, 3994, 4476, 4761, 5937
ZrmI	AGTACT	5 cut(s)	354, 2310, 2823, 5018, 6145
Zsp2I	ATGCAT	3 cut(s)	2347, 2455, 4963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.