Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004759

Physical Location & Seq

Genomic Coordinates Forward (+)

69760833 .. 69764915

Gene Structure 4083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG496500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2691 bp

ATGGAGAAGGGTAGGACTGGTTTGGGGGCTGTCATCCTTGATGCAGCTGGGAATTTGGTAGGTGCTGCTGCTATCCCAATCGTTGGTCCTCTCAAACCAAGATCAGCGGAAGTATTGGCTCTTTGGAAGGGGTTGTGGTACTGTAAACAGTTAAGAATGGATCAAGTTTTGATAACTGGTGATGCCATTAACGTTATTAAAGCTTTGGATGATTCTGGATTGGACTTGAGTGAAGATGGTGGAGTGCTTGATGCAGTTCGTTCCCTCTTGAAGGAGTTTGCTCTTGTTTCGTGGAAGCATGTTCGGAAGAGATACAATACAGTGGCTCACAAACTAGCTAGACAGGCCTTAAGTATGGTGAAATGTATGTTCTGTAAGGAGATAGGGCCTCCATGGTTACATGAGATTATTGAGGCAGGAGAGTTGTCGAGAAATCGACGTGTTTGGCATGAAACAAGTCACAGAGAAGTGATTTTTGTTGGGTCATTTTGTGAAATAGTGAATTGGGTGAAGTGGGGAGTCCATTTTGGGGAGAAGATGTTGTGTGCTTGTTCAGGAGAGCAGTTCAAATTTGAAGAGCCACCTCAGTCGCCGGAGTCATTGGCTACCAGGGACTTCTCGGCGAGTGGCCTGTCTTCGAGGACCATCGGAGATTGGGACTTGGGCTCGAAATTTGATGACATTCAAGTAGATGAGGCTGAGTCCACTCTCAAAGAAGCTCTATCTTTGAATTATGAGGAAGCTAGGGCGTTGTTGGGGAGGCTTGAGTTCCAGACAGGGAATTTTGATGCTGCTCTTCAGGTGTTTCAGGGTATTGACATTAGGAACTTAACCCCAAGAATGGCCAAGGCCATTGTCGAGAGAATTAGGCACCGAAAACCGCGTGTGAAAGGCGATAGCTATGTGATGCTCAATGTGATGTCCTTGCATTCAGTGAGCTTACTGACTGAGGCAATATTGCTCAAGGCAAGATCACTGGGGGAGCTGGGAAGGTTTAGAGAGGCCGCAAAGGAATGCAAAGTTATTCTTGACACAGTTGAATTGGCATTGCCTAACGGAATGCCTGAAGAAATTGGTGAGGACTGTAAATTGCAAGAAATGTTTCACAAAGCACTTGAGTTGCTCCCTATTTTGTGGACCAAGGCAGGGTATCTTGAAGAAGCGATAACTGCATATCGCCGGGCTCTGATCAAGCCATGGAATTTGGACCCTGAGAGGTTGGCTGGTGTTCAGAAAAGCTTAGCTTGCACTTTACTGTATAGTGGTGTAGAAGCAAGCCTTCCACCTCAGCTGCAAGTATGGGGTCCAACTACACCCAAGAACAGTACAGAAGAAGCAATCCTGTTGTTGTTGATACTTATGAAAAAGGTGGCATTGAATCAAATAAAGTGGGATTCAGAAGTTATGGATCATTTGAGTTATGCACTTTCTGTTACTGGACAGTTCGAATTATTAGCTAATCATTTCGAGCAGGCCCTTCCGGGGTTGTATGGTCGAGCTGAGAGATGGTACTTGCTTGCACTTTGTTACAGTGCCTGTGGACAAAATGAAGAAGCACTGAACCTTTTGAAAAAGGTTGCCGGCTGTTCCGAAGCAAAGAACAAGCCCCATTTCCTATATTTTCTCTTGGGAGCAAAGCTATGTTCCCTAGATACGGTTCATGCTCATGAAGGGATAGAATTTTCGCGTAAAGCTATTGACTTGGTCAGTGATCAGTGCGAGCATTTCATGGGTCAAGCACATAAGTTTCTTGGTGTTTGCTATAGCGGTGCAGCAAGAGCATCTATATCTGATTCTGAAAGAATGGTTTTTCAGAGAGAGTCTTTGAACTCTCTAAATCATGCTGCTCTTAATTGGAAGGGGGATCCCGAGGTAATGTATAGTCTTGGCCTCGAAAATGCTGTGCAAAGGAATTTAGATGCAGCTTTCAGTTATACAATGAAGTACTCAGATATGATGGCTGGCAGCTCAGGACACGGCTGGAAGCTATTAGCCCTTGTAGTTTCTGCAGAGCAGCGATTCAATGATGCTGAAGCCATAGTGGATTTTGCTTTGGATGAAGCAGGAAGAAGAGATCAATTAGAACTGCTCAGACTGAAAGCGGTGCTTCAAATTGCTCAGGAACATCCCAAGCAAGCAATAGAAACCTACAGAATGTTGCTAGCTTCTGTTCAAGCACAAAGGAATTCAAAAGCAAAGAACTTTGAGCAAGGAAGGACCTTAGATCCTGAGGCAATTCTGGAAAGAAACTTGGAAAAGGAAGCCTGGAGGGACTTGGCAGCCATTTATACGAAACTTAGTTTGTGGCCTGATGCAGAAATATGTATCAATAAAGCCAAGCTAATTGAGTTTTATTCTCCTCAAAGTTGGCATACGACAGGTACGTTATTTGAAGCTCAATCCAAGCACAAGGAAGCCCTCATTTCGTTCTCAGTATCACTTTCAATAGAGCCAGATTATGTTCCAAGCATCGTTTCAACTGCAGAAGTATTGATGAAACTCGGTTCTGGATCACTCCCTATTGCAAGAAGCTTTTTAATGAATGCTCTGCGATTAGAACCCACAAACCATGAGGCTTGGTTGAATCTCGGAATGTTGTCGAAAATGGAAGGCTCATTGCAGCAAGCAGCAGAATTTTTCCAGGCTGCATATGAGCTTCAGCTGTCAGCTCCGGTGCAAAGCTTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016310 GO:0019637 GO:0030258 GO:0033036 GO:0034613 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0051179 GO:0051641 GO:0070727 GO:0071704 GO:0071944 GO:0072657 GO:0072659 GO:1990778

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_8

Protein Analysis

896

Amino Acids

100.08

Weight (kDa)

5.95

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	2 - 116	5.3e-17	Reverse transcriptase-like
TPR_CcmH_CycH	PF23914	788 - 884	7.9e-07	Cytochrome c-type biogenesis protein H TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27460 AT1G27460 AT1G27460
fragaria_vesca	FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080 FvH4_2g33080
malus_domestica	MD15G1069300.v1.1
prunus_persica	Prupe.1G422800_v2.0.a1 Prupe.1G422800_v2.0.a1 Prupe.1G422800_v2.0.a1
pyrus_communis	pycom08g06750 pycom15g06540
rosa_chinensis	RchiOBHm_Chr6g0309631
rosa_laevigata	RLG00000010548
rosa_multiflora	Rmu_co8186100.1_g000001 Rmu_sc0007632.1_g000005 Rmu_sc0008462.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159270
rosa_rugosa	Rorug06G0373200 Rorug06G0373300
rosa_samantha	Rh6AG486900 Rh6BG496500 Rh6CG501200 Rh6DG487400
rosa_wichuraiana	Rw6G042410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	870
AccB7I	CCANNNNNTGG	1 cut(s)	83
AccII	CGCG	2 cut(s)	883, 1687
AciI	CCGC	5 cut(s)	107, 881, 1005, 1767, 2102
AclI	AACGTT	1 cut(s)	192
AclWI	GGATC	6 cut(s)	168, 1416, 1859, 1872, 2219, 2518
AcoI	YGGCCR	1 cut(s)	843
AcsI	RAATTY	9 cut(s)	52, 569, 671, 781, 1201, 1679, 1912, 2185, 2633
AcuI	CTGAAG	4 cut(s)	782, 1086, 2052, 2642
AfaI	GTAC	5 cut(s)	140, 1327, 1511, 1946, 2383
AfiI	CCNNNNNNNGG	7 cut(s)	83, 271, 529, 841, 1146, 1482, 1654
AflII	CTTAAG	1 cut(s)	349
AflIII	ACRYGT	1 cut(s)	439
AjiI	CACGTC	1 cut(s)	440
AjnI	CCWGG	3 cut(s)	608, 2264, 2640
AjuI	GAANNNNNNNTTGG	2 cut(s)	2458, 2490
AlwI	GGATC	6 cut(s)	168, 1416, 1859, 1872, 2219, 2518
AlwNI	CAGNNNCTG	1 cut(s)	1536
Ama87I	CYCGRG	1 cut(s)	1868
AoxI	GGCC	9 cut(s)	345, 386, 628, 843, 849, 1002, 1473, 1888, 2306
ApoI	RAATTY	9 cut(s)	52, 569, 671, 781, 1201, 1679, 1912, 2185, 2633
Asp700I	GAANNNNTTC	1 cut(s)	1101
AspS9I	GGNCC	8 cut(s)	86, 386, 642, 1137, 1207, 1304, 1474, 2217
AsuC2I	CCSGG	2 cut(s)	1181, 1482
AsuHPI	GGTGA	4 cut(s)	191, 370, 520, 1088
AsuII	TTCGAA	1 cut(s)	1446
AsuNHI	GCTAGC	1 cut(s)	2161
AvaI	CYCGRG	1 cut(s)	1868
AvaII	GGWCC	6 cut(s)	86, 642, 1137, 1207, 1304, 2217
AxyI	CCTNAGG	1 cut(s)	2229
BalI	TGGCCA	1 cut(s)	845
BamHI	GGATCC	1 cut(s)	1864
BanI	GGYRCC	1 cut(s)	870
BanII	GRGCYC	2 cut(s)	668, 1186
BbsI	GAAGAC	1 cut(s)	627
BbvCI	CCTCAGC	1 cut(s)	1287
BccI	CCATC	4 cut(s)	230, 653, 1500, 1951
BceAI	ACGGC	1 cut(s)	1993
BciT130I	CCWGG	3 cut(s)	610, 2266, 2642
BclI	TGATCA	2 cut(s)	1188, 1711
BcnI	CCSGG	2 cut(s)	1181, 1482
BfaI	CTAG	5 cut(s)	335, 339, 744, 1649, 2162
BfmI	CTRYAG	4 cut(s)	1762, 2007, 2149, 2481
BfrI	CTTAAG	1 cut(s)	349
BlpI	GCTNAGC	1 cut(s)	1240
BmcAI	AGTACT	1 cut(s)	1946
Bme1390I	CCNGG	5 cut(s)	610, 1181, 1482, 2266, 2642
Bme18I	GGWCC	6 cut(s)	86, 642, 1137, 1207, 1304, 2217
BmeT110I	CYCGRG	1 cut(s)	1868
BmgBI	CACGTC	1 cut(s)	440
BmgT120I	GGNCC	8 cut(s)	86, 386, 642, 1137, 1207, 1304, 1474, 2217
BmiI	GGNNCC	4 cut(s)	872, 1209, 1305, 1866
BmrFI	CCNGG	5 cut(s)	610, 1181, 1482, 2266, 2642
BmrI	ACTGGG	1 cut(s)	986
BmtI	GCTAGC	1 cut(s)	2165
BmuI	ACTGGG	1 cut(s)	986
BpiI	GAAGAC	1 cut(s)	627
BpmI	CTGGAG	1 cut(s)	2287
Bpu10I	CCTNAGC	3 cut(s)	1287, 1969, 2118
Bpu1102I	GCTNAGC	1 cut(s)	1240
Bpu14I	TTCGAA	1 cut(s)	1446
BpuEI	CTTGAG	4 cut(s)	247, 785, 947, 1136
BpuMI	CCSGG	2 cut(s)	1181, 1482
BsaJI	CCNNGG	7 cut(s)	392, 609, 846, 1140, 1196, 1481, 1869
BsaWI	WCCGGW	1 cut(s)	2671
BsaXI	ACNNNNNCTCC	2 cut(s)	524, 554
Bsc4I	CCNNNNNNNGG	7 cut(s)	83, 271, 529, 841, 1146, 1482, 1654
Bse118I	RCCGGY	1 cut(s)	1580
Bse1I	ACTGG	4 cut(s)	22, 181, 981, 1441
Bse21I	CCTNAGG	1 cut(s)	2229
Bse3DI	GCAATG	2 cut(s)	1046, 2615
BseBI	CCWGG	3 cut(s)	610, 2266, 2642
BseDI	CCNNGG	7 cut(s)	392, 609, 846, 1140, 1196, 1481, 1869
BseGI	GGATG	4 cut(s)	33, 214, 2062, 2125
BseLI	CCNNNNNNNGG	7 cut(s)	83, 271, 529, 841, 1146, 1482, 1654
BseMI	GCAATG	2 cut(s)	1046, 2615
BseNI	ACTGG	4 cut(s)	22, 181, 981, 1441
BseRI	GAGGAG	1 cut(s)	2349
BseYI	CCCAGC	2 cut(s)	47, 985
BsgI	GTGCAG	1 cut(s)	1791
Bsh1236I	CGCG	2 cut(s)	883, 1687
BshFI	GGCC	9 cut(s)	347, 388, 630, 845, 851, 1004, 1475, 1890, 2308
BshNI	GGYRCC	1 cut(s)	870
BsiHKCI	CYCGRG	1 cut(s)	1868
BsiSI	CCGG	5 cut(s)	593, 1180, 1481, 1581, 2672
BslFI	GGGAC	3 cut(s)	626, 671, 2285
BslI	CCNNNNNNNGG	7 cut(s)	83, 271, 529, 841, 1146, 1482, 1654
BsmFI	GGGAC	3 cut(s)	626, 671, 2285
BsmI	GAATGC	4 cut(s)	928, 1019, 1065, 2548
BsnI	GGCC	9 cut(s)	347, 388, 630, 845, 851, 1004, 1475, 1890, 2308
BsoBI	CYCGRG	1 cut(s)	1868
Bsp119I	TTCGAA	1 cut(s)	1446
Bsp1286I	GDGCHC	2 cut(s)	668, 1186
Bsp1720I	GCTNAGC	1 cut(s)	1240
Bsp19I	CCATGG	2 cut(s)	392, 1196
BspACI	CCGC	5 cut(s)	107, 881, 1005, 1767, 2102
BspANI	GGCC	9 cut(s)	347, 388, 630, 845, 851, 1004, 1475, 1890, 2308
BspFNI	CGCG	2 cut(s)	883, 1687
BspHI	TCATGA	1 cut(s)	1666
BspLI	GGNNCC	4 cut(s)	872, 1209, 1305, 1866
BspMAI	CTGCAG	2 cut(s)	2011, 2485
BspOI	GCTAGC	1 cut(s)	2165
BspPI	GGATC	6 cut(s)	168, 1416, 1859, 1872, 2219, 2518
BspQI	GCTCTTC	2 cut(s)	570, 801
BspT104I	TTCGAA	1 cut(s)	1446
BspT107I	GGYRCC	1 cut(s)	870
BspTI	CTTAAG	1 cut(s)	349
BsrDI	GCAATG	2 cut(s)	1046, 2615
BsrFI	RCCGGY	1 cut(s)	1580
BsrI	ACTGG	4 cut(s)	22, 181, 981, 1441
BssAI	RCCGGY	1 cut(s)	1580
BssECI	CCNNGG	7 cut(s)	392, 609, 846, 1140, 1196, 1481, 1869
BssT1I	CCWWGG	4 cut(s)	392, 846, 1140, 1196
Bst2UI	CCWGG	3 cut(s)	610, 2266, 2642
Bst6I	CTCTTC	4 cut(s)	302, 570, 801, 2065
BstAFI	CTTAAG	1 cut(s)	349
BstBI	TTCGAA	1 cut(s)	1446
BstDSI	CCRYGG	2 cut(s)	392, 1196
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstF5I	GGATG	4 cut(s)	33, 214, 2062, 2125
BstFNI	CGCG	2 cut(s)	883, 1687
BstMWI	GCNNNNNNNGC	4 cut(s)	344, 1169, 1245, 1778
BstNI	CCWGG	3 cut(s)	610, 2266, 2642
BstNSI	RCATGY	1 cut(s)	302
BstSCI	CCNGG	5 cut(s)	608, 1179, 1480, 2264, 2640
BstSFI	CTRYAG	4 cut(s)	1762, 2007, 2149, 2481
BstUI	CGCG	2 cut(s)	883, 1687
BstV2I	GAAGAC	1 cut(s)	627
BstX2I	RGATCY	2 cut(s)	1864, 2224
BstYI	RGATCY	2 cut(s)	1864, 2224
Bsu36I	CCTNAGG	1 cut(s)	2229
BsuRI	GGCC	9 cut(s)	347, 388, 630, 845, 851, 1004, 1475, 1890, 2308
BtgI	CCRYGG	2 cut(s)	392, 1196
BtrI	CACGTC	1 cut(s)	440
BtsCI	GGATG	4 cut(s)	33, 214, 2062, 2125
BtsIMutI	CAGTG	7 cut(s)	327, 939, 974, 1537, 1556, 1714, 1721
CaiI	CAGNNNCTG	1 cut(s)	1536
CciI	TCATGA	1 cut(s)	1666
Cfr10I	RCCGGY	1 cut(s)	1580
Cfr13I	GGNCC	8 cut(s)	86, 386, 642, 1137, 1207, 1304, 1474, 2217
Csp6I	GTAC	5 cut(s)	139, 1326, 1510, 1945, 2382
CspCI	CAANNNNNGTGG	2 cut(s)	1370, 1405
CviQI	GTAC	5 cut(s)	139, 1326, 1510, 1945, 2382
EaeI	YGGCCR	1 cut(s)	843
Eam1104I	CTCTTC	4 cut(s)	302, 570, 801, 2065
EarI	CTCTTC	4 cut(s)	302, 570, 801, 2065
Eco130I	CCWWGG	4 cut(s)	392, 846, 1140, 1196
Eco147I	AGGCCT	1 cut(s)	347
Eco24I	GRGCYC	2 cut(s)	668, 1186
Eco47I	GGWCC	6 cut(s)	86, 642, 1137, 1207, 1304, 2217
Eco57I	CTGAAG	4 cut(s)	782, 1086, 2052, 2642
Eco81I	CCTNAGG	1 cut(s)	2229
Eco88I	CYCGRG	1 cut(s)	1868
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoO109I	RGGNCCY	3 cut(s)	386, 1474, 2217
EcoRI	GAATTC	1 cut(s)	2185
EcoRII	CCWGG	3 cut(s)	608, 2264, 2640
EcoT14I	CCWWGG	4 cut(s)	392, 846, 1140, 1196
EcoT38I	GRGCYC	2 cut(s)	668, 1186
ErhI	CCWWGG	4 cut(s)	392, 846, 1140, 1196
FalI	AAGNNNNNCTT	8 cut(s)	1011, 1043, 1228, 1260, 1263, 1295, 2091, 2123
FaqI	GGGAC	3 cut(s)	626, 671, 2285
FauNDI	CATATG	1 cut(s)	2650
FbaI	TGATCA	2 cut(s)	1188, 1711
FokI	GGATG	4 cut(s)	20, 221, 2069, 2112
FriOI	GRGCYC	2 cut(s)	668, 1186
FspBI	CTAG	5 cut(s)	335, 339, 744, 1649, 2162
GsaI	CCCAGC	2 cut(s)	51, 989
GsuI	CTGGAG	1 cut(s)	2287
HaeIII	GGCC	9 cut(s)	347, 388, 630, 845, 851, 1004, 1475, 1890, 2308
HapII	CCGG	5 cut(s)	593, 1180, 1481, 1581, 2672
HindIII	AAGCTT	4 cut(s)	201, 1237, 2530, 2680
HpaII	CCGG	5 cut(s)	593, 1180, 1481, 1581, 2672
HphI	GGTGA	4 cut(s)	191, 370, 520, 1088
Hpy166II	GTNNAC	4 cut(s)	146, 705, 1137, 1541
Hpy8I	GTNNAC	4 cut(s)	146, 705, 1137, 1541
Hpy99I	CGWCG	1 cut(s)	441
HpyAV	CCTTC	9 cut(s)	121, 265, 984, 1289, 1487, 1664, 1852, 2208, 2603
HpyCH4IV	ACGT	3 cut(s)	192, 439, 2384
HpyF10VI	GCNNNNNNNGC	4 cut(s)	344, 1169, 1245, 1778
HpySE526I	ACGT	3 cut(s)	192, 439, 2384
KroI	GCCGGC	1 cut(s)	1580
KroNI	GCCGGC	1 cut(s)	1582
Ksp22I	TGATCA	2 cut(s)	1188, 1711
LguI	GCTCTTC	2 cut(s)	570, 801
LmnI	GCTCC	4 cut(s)	982, 1128, 1631, 2674
MaeI	CTAG	5 cut(s)	335, 339, 744, 1649, 2162
MaeII	ACGT	3 cut(s)	192, 439, 2384
MaeIII	GTNAC	4 cut(s)	396, 458, 1432, 1526
MflI	RGATCY	2 cut(s)	1864, 2224
MhlI	GDGCHC	2 cut(s)	668, 1186
MlsI	TGGCCA	1 cut(s)	845
MluNI	TGGCCA	1 cut(s)	845
MlyI	GAGTC	4 cut(s)	528, 605, 710, 1829
MmeI	TCCRAC	1 cut(s)	1331
Mox20I	TGGCCA	1 cut(s)	845
MroNI	GCCGGC	1 cut(s)	1580
MroXI	GAANNNNTTC	1 cut(s)	1101
MscI	TGGCCA	1 cut(s)	845
MseI	TTAA	7 cut(s)	152, 189, 198, 350, 830, 1851, 2537
MslI	CAYNNNNRTG	1 cut(s)	1665
Msp20I	TGGCCA	1 cut(s)	845
MspA1I	CMGCKG	4 cut(s)	47, 107, 1291, 2662
MspCI	CTTAAG	1 cut(s)	349
MspI	CCGG	5 cut(s)	593, 1180, 1481, 1581, 2672
MspR9I	CCNGG	5 cut(s)	610, 1181, 1482, 2266, 2642
Mva1269I	GAATGC	4 cut(s)	928, 1019, 1065, 2548
MvaI	CCWGG	3 cut(s)	610, 2266, 2642
MvnI	CGCG	2 cut(s)	883, 1687
MwoI	GCNNNNNNNGC	4 cut(s)	344, 1169, 1245, 1778
NaeI	GCCGGC	1 cut(s)	1582
NciI	CCSGG	2 cut(s)	1181, 1482
NcoI	CCATGG	2 cut(s)	392, 1196
NdeI	CATATG	1 cut(s)	2650
NgoMIV	GCCGGC	1 cut(s)	1580
NheI	GCTAGC	1 cut(s)	2161
NlaIV	GGNNCC	4 cut(s)	872, 1209, 1305, 1866
NmeAIII	GCCGAG	1 cut(s)	599
NmuCI	GTSAC	1 cut(s)	458
NspI	RCATGY	1 cut(s)	302
NspV	TTCGAA	1 cut(s)	1446
PagI	TCATGA	1 cut(s)	1666
PceI	AGGCCT	1 cut(s)	347
PciSI	GCTCTTC	2 cut(s)	570, 801
PcsI	WCGNNNNNNNCGW	1 cut(s)	2381
PctI	GAATGC	4 cut(s)	928, 1019, 1065, 2548
PdiI	GCCGGC	1 cut(s)	1582
PdmI	GAANNNNTTC	1 cut(s)	1101
PfeI	GAWTC	6 cut(s)	212, 1378, 1394, 1793, 2019, 2584
PflFI	GACNNNGTC	1 cut(s)	1703
PflMI	CCANNNNNTGG	1 cut(s)	83
PleI	GAGTC	4 cut(s)	527, 604, 709, 1828
PpsI	GAGTC	4 cut(s)	527, 604, 709, 1828
PpuMI	RGGWCCY	1 cut(s)	2217
Psp1406I	AACGTT	1 cut(s)	192
Psp5II	RGGWCCY	1 cut(s)	2217
Psp6I	CCWGG	3 cut(s)	608, 2264, 2640
PspFI	CCCAGC	2 cut(s)	47, 985
PspGI	CCWGG	3 cut(s)	608, 2264, 2640
PspN4I	GGNNCC	4 cut(s)	872, 1209, 1305, 1866
PspPI	GGNCC	8 cut(s)	86, 386, 642, 1137, 1207, 1304, 1474, 2217
PspPPI	RGGWCCY	1 cut(s)	2217
PstI	CTGCAG	2 cut(s)	2011, 2485
PstNI	CAGNNNCTG	1 cut(s)	1536
PsuI	RGATCY	2 cut(s)	1864, 2224
PsyI	GACNNNGTC	1 cut(s)	1703
PvuII	CAGCTG	3 cut(s)	47, 1291, 2662
RsaI	GTAC	5 cut(s)	140, 1327, 1511, 1946, 2383
RsaNI	GTAC	5 cut(s)	139, 1326, 1510, 1945, 2382
RseI	CAYNNNNRTG	1 cut(s)	1665
SapI	GCTCTTC	2 cut(s)	570, 801
SaqAI	TTAA	7 cut(s)	152, 189, 198, 350, 830, 1851, 2537
Sau96I	GGNCC	8 cut(s)	86, 386, 642, 1137, 1207, 1304, 1474, 2217
ScaI	AGTACT	1 cut(s)	1946
SchI	GAGTC	4 cut(s)	528, 605, 710, 1829
ScrFI	CCNGG	5 cut(s)	610, 1181, 1482, 2266, 2642
SduI	GDGCHC	2 cut(s)	668, 1186
SfcI	CTRYAG	4 cut(s)	1762, 2007, 2149, 2481
SfuI	TTCGAA	1 cut(s)	1446
SinI	GGWCC	6 cut(s)	86, 642, 1137, 1207, 1304, 2217
SmiMI	CAYNNNNRTG	1 cut(s)	1665
SmlI	CTYRAG	5 cut(s)	226, 349, 764, 962, 1115
SmoI	CTYRAG	5 cut(s)	226, 349, 764, 962, 1115
SseBI	AGGCCT	1 cut(s)	347
SsiI	CCGC	5 cut(s)	107, 881, 1005, 1767, 2102
SspI	AATATT	1 cut(s)	957
SspMI	CTAG	5 cut(s)	335, 339, 744, 1649, 2162
StuI	AGGCCT	1 cut(s)	347
StyD4I	CCNGG	5 cut(s)	608, 1179, 1480, 2264, 2640
StyI	CCWWGG	4 cut(s)	392, 846, 1140, 1196
TaiI	ACGT	3 cut(s)	195, 442, 2387
TatI	WGTACW	2 cut(s)	1325, 1944
TauI	GCSGC	1 cut(s)	1007
TfiI	GAWTC	6 cut(s)	212, 1378, 1394, 1793, 2019, 2584
Tru1I	TTAA	7 cut(s)	152, 189, 198, 350, 830, 1851, 2537
Tru9I	TTAA	7 cut(s)	152, 189, 198, 350, 830, 1851, 2537
TscAI	CASTG	7 cut(s)	327, 939, 981, 1537, 1563, 1714, 1721
TseFI	GTSAC	1 cut(s)	458
Tsp45I	GTSAC	1 cut(s)	458
TspGWI	ACGGA	1 cut(s)	1071
TspRI	CASTG	7 cut(s)	327, 939, 981, 1537, 1563, 1714, 1721
Tth111I	GACNNNGTC	1 cut(s)	1703
Van91I	CCANNNNNTGG	1 cut(s)	83
Vha464I	CTTAAG	1 cut(s)	349
VpaK11BI	GGWCC	6 cut(s)	86, 642, 1137, 1207, 1304, 2217
XagI	CCTNNNNNAGG	1 cut(s)	269
XapI	RAATTY	9 cut(s)	52, 569, 671, 781, 1201, 1679, 1912, 2185, 2633
XceI	RCATGY	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	1101
XspI	CTAG	5 cut(s)	335, 339, 744, 1649, 2162
ZrmI	AGTACT	1 cut(s)	1946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.