pycom08g09820
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0006637
Physical Location & Seq
Reverse (-)
8152647 .. 8154508
1862 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g09820.2

Sequence Viewer

Length: 1362 bp
ATGCAGCAAGAATATAGTCCCCTCGGCATTCGTCAGCTGATGATGTCTTCTATGAATTGCCTCACTCCATATAGGTTATGGGATTCACCCTCTCGTGAGGGTAGCCCTGATGCCTTGCTAAAAAGTGCTGCTAAAACTTTTACAGGCACGCCATCTATTTTGAAGAAACGACACCGGGATTTGTTGTCTCCACTGTCGCCATTGTCCGATAGAAGATTTGATAAAAGGGTTGGGACTGACGTGACCTCCTGCTTGGCCAGAGATTTTTCACGTCTAGATGTTATGTTTGAAGATACAGAGAACAAAGAAGATTCACTTTCTCCATCATCTGATCAGAAAAGGAATTCTGATGCCTCTGTTGAAGATAAAGAGAACAAGGGTACCTGTGAAAACAAAGTAGAAAAAGGGATTGACAGCACTGCAATGTCAGATGATGGAACCGCACAGAAGGGTGTTGATGACGGTCAATCCCAGGAAAAGAGAAAGCAGTTCCAACAAACTTCTGATGTTGATGCTGAGAGTAAGGTTGATCTCGTCCCAACTACACAAAGTGCACAACCCTCTGGAGTTCTTGTTGAACGTAACACAAATGATCTGCCACTGAATTCTCCTGATGTAGTTGGTTGTAAAGCTGAAAAACCCTTCAGCTCAACTTCTAGAACTCCTAAAAGTCTCTTACGTAAAAGCTTTGAAGCCGCCAACCCAGGAGTTCCTTCTAAATCTTTCTCTGCAAGACAATGCCCATCTGTTAAAACCCCCACTATATGCGTAAAGAAGCATGAAAGTCTTGCAGATAAATGCTTACAATCTGATTCTTCATCAGTTCCCCCAGAGACATCTGGTGATAATGCTGGCAATGATGTCAGTATTGAAAGCATTTTCGGTGGTACTCCTTTTAAGAGAAGTATCGAATCTCCTTCCGCATGGAAATCTCCTTGGTTCATCAACTCCTTCGTCCCCGGCCCTAGTGTTGATACTGAAATTACAATTGAGGATATGGGGTTTTTCATGAGCCCAGGGGATAGAAGCTACGATGCCATTGGGCTGATGAAACAGATAAGTGAGCAGAGTGCTGCTGCCTATGCCAATGCCCAGGAGGTTTTGGGAAATGAAACTCCCGAAAGTTTATTCCGGGAAAGACAGAAAGACCGAGATATTGCGGGCCTCGAGAACGACCATGGGCTACCTAATCAGCCAGGGAGTAGTTCTCTTTCGGCTCCTAATGTTTTGGTGGAGCGTCGCACCCTCGACTTCAGCGAATGCGGGACGCCCGGGAAGAAGGGAACAGAAAATGTAAAGTCTGCCTCTAATGCCAAAAGCTTCTCAAGTCCGACTTCTTATTTGTTGAAGGGTTGCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006275 GO:0006355 GO:0006357 GO:0008150 GO:0008285 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009623 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0032875 GO:0042127 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051704 GO:0051707 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0090329 GO:0097159 GO:0140110 GO:1901181 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04151 ko04218 ko05166 map04151 map04218 map05166
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

454

Amino Acids

49.27

Weight (kDa)

5.38

Isoelectric Point (pI)

63.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 380
AccB1I GGYRCC 1 cut(s) 380
AciI CCGC 5 cut(s) 441, 696, 921, 1160, 1263
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 2 cut(s) 343, 604
AcuI CTGAAG 2 cut(s) 628, 1237
AcyI GRCGYC 1 cut(s) 1268
AdeI CACNNNGTG 1 cut(s) 551
AfaI GTAC 2 cut(s) 382, 889
AgsI TTSAA 7 cut(s) 163, 290, 362, 578, 692, 872, 1348
AjiI CACGTC 2 cut(s) 241, 272
AjnI CCWGG 5 cut(s) 471, 703, 1015, 1092, 1195
AluBI AGCT 6 cut(s) 37, 632, 648, 687, 1029, 1320
AluI AGCT 6 cut(s) 37, 632, 648, 687, 1029, 1320
Alw21I GWGCWC 1 cut(s) 556
Alw26I GTCTC 3 cut(s) 192, 677, 827
Alw44I GTGCAC 1 cut(s) 552
Ama87I CYCGRG 2 cut(s) 1166, 1271
AoxI GGCC 3 cut(s) 255, 961, 1162
ApaLI GTGCAC 1 cut(s) 552
ApeKI GCWGC 4 cut(s) 4, 128, 1073, 1076
ApoI RAATTY 2 cut(s) 343, 604
ArsI GACNNNNNNTTYG 2 cut(s) 1324, 1356
Asp718I GGTACC 1 cut(s) 380
AspS9I GGNCC 2 cut(s) 962, 1162
AsuC2I CCSGG 5 cut(s) 176, 960, 1133, 1272, 1273
AsuHPI GGTGA 2 cut(s) 78, 854
AvaI CYCGRG 2 cut(s) 1166, 1271
BaeGI GKGCMC 1 cut(s) 556
BaeI ACNNNNGTAYC 2 cut(s) 364, 397
BalI TGGCCA 1 cut(s) 257
BanI GGYRCC 1 cut(s) 380
BanII GRGCYC 1 cut(s) 1016
BauI CACGAG 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 556
BbvI GCAGC 4 cut(s) 16, 115, 1060, 1063
BccI CCATC 4 cut(s) 160, 331, 428, 751
BciT130I CCWGG 5 cut(s) 473, 705, 1017, 1094, 1197
BclI TGATCA 1 cut(s) 331
BcnI CCSGG 5 cut(s) 176, 960, 1133, 1272, 1273
BcoDI GTCTC 3 cut(s) 192, 677, 827
BfaI CTAG 3 cut(s) 275, 657, 966
BisI GCNGC 5 cut(s) 5, 129, 696, 1074, 1077
BlsI GCNGC 5 cut(s) 6, 130, 697, 1075, 1078
BmeT110I CYCGRG 2 cut(s) 1166, 1271
BmgBI CACGTC 2 cut(s) 241, 272
BmgT120I GGNCC 2 cut(s) 962, 1162
BmiI GGNNCC 3 cut(s) 382, 439, 1218
BmsI GCATC 4 cut(s) 100, 340, 502, 1024
BpiI GAAGAC 1 cut(s) 39
BplI GAGNNNNNCTC 2 cut(s) 1192, 1224
BpmI CTGGAG 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 1309
BpuMI CCSGG 5 cut(s) 176, 960, 1133, 1272, 1273
BsaAI YACGTR 1 cut(s) 680
BsaHI GRCGYC 1 cut(s) 1268
BsaXI ACNNNNNCTCC 4 cut(s) 230, 260, 558, 588
Bse3DI GCAATG 2 cut(s) 429, 862
BseBI CCWGG 5 cut(s) 473, 705, 1017, 1094, 1197
BseMI GCAATG 2 cut(s) 429, 862
BseMII CTCAG 1 cut(s) 507
BseSI GKGCMC 1 cut(s) 556
BseXI GCAGC 4 cut(s) 16, 115, 1060, 1063
BshFI GGCC 3 cut(s) 257, 963, 1164
BshNI GGYRCC 1 cut(s) 380
BsiHKAI GWGCWC 1 cut(s) 556
BsiHKCI CYCGRG 2 cut(s) 1166, 1271
BsiSI CCGG 4 cut(s) 175, 960, 1132, 1272
BslFI GGGAC 5 cut(s) 3, 247, 521, 941, 1279
BsmAI GTCTC 3 cut(s) 192, 677, 827
BsmFI GGGAC 5 cut(s) 3, 247, 521, 941, 1279
BsmI GAATGC 2 cut(s) 27, 1265
BsnI GGCC 3 cut(s) 257, 963, 1164
BsoBI CYCGRG 2 cut(s) 1166, 1271
Bsp1286I GDGCHC 2 cut(s) 556, 1016
Bsp143I GATC 3 cut(s) 331, 529, 592
Bsp19I CCATGG 1 cut(s) 1177
BspACI CCGC 5 cut(s) 441, 696, 921, 1160, 1263
BspANI GGCC 3 cut(s) 257, 963, 1164
BspCNI CTCAG 1 cut(s) 508
BspHI TCATGA 1 cut(s) 1008
BspLI GGNNCC 3 cut(s) 382, 439, 1218
BspT107I GGYRCC 1 cut(s) 380
BsrDI GCAATG 2 cut(s) 429, 862
BssMI GATC 3 cut(s) 331, 529, 592
BssNI GRCGYC 1 cut(s) 1268
BssSI CACGAG 1 cut(s) 93
BssT1I CCWWGG 2 cut(s) 935, 1177
Bst2BI CACGAG 1 cut(s) 93
Bst2UI CCWGG 5 cut(s) 473, 705, 1017, 1094, 1197
Bst4CI ACNGT 2 cut(s) 195, 464
BstACI GRCGYC 1 cut(s) 1268
BstBAI YACGTR 1 cut(s) 680
BstC8I GCNNGC 3 cut(s) 149, 853, 1162
BstDEI CTNAG 1 cut(s) 516
BstDSI CCRYGG 1 cut(s) 1177
BstKTI GATC 3 cut(s) 334, 532, 595
BstMAI GTCTC 3 cut(s) 192, 677, 827
BstMBI GATC 3 cut(s) 331, 529, 592
BstMWI GCNNNNNNNGC 2 cut(s) 1082, 1310
BstNI CCWGG 5 cut(s) 473, 705, 1017, 1094, 1197
BstSLI GKGCMC 1 cut(s) 556
BstSNI TACGTA 1 cut(s) 680
BstV1I GCAGC 4 cut(s) 16, 115, 1060, 1063
BstV2I GAAGAC 1 cut(s) 39
BsuRI GGCC 3 cut(s) 257, 963, 1164
BtgI CCRYGG 1 cut(s) 1177
BtrI CACGTC 2 cut(s) 241, 272
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 3 cut(s) 191, 417, 599
Cac8I GCNNGC 3 cut(s) 149, 853, 1162
CciI TCATGA 1 cut(s) 1008
Cfr13I GGNCC 2 cut(s) 962, 1162
Cfr9I CCCGGG 1 cut(s) 1271
CseI GACGC 2 cut(s) 1226, 1276
Csp6I GTAC 2 cut(s) 381, 888
CviAII CATG 4 cut(s) 779, 924, 1009, 1178
CviQI GTAC 2 cut(s) 381, 888
DdeI CTNAG 1 cut(s) 516
DpnI GATC 3 cut(s) 333, 531, 594
DpnII GATC 3 cut(s) 331, 529, 592
DraIII CACNNNGTG 1 cut(s) 551
EaeI YGGCCR 1 cut(s) 255
Eco105I TACGTA 1 cut(s) 680
Eco130I CCWWGG 2 cut(s) 935, 1177
Eco24I GRGCYC 1 cut(s) 1016
Eco57I CTGAAG 2 cut(s) 628, 1237
Eco88I CYCGRG 2 cut(s) 1166, 1271
EcoRI GAATTC 2 cut(s) 343, 604
EcoRII CCWGG 5 cut(s) 471, 703, 1015, 1092, 1195
EcoT14I CCWWGG 2 cut(s) 935, 1177
EcoT38I GRGCYC 1 cut(s) 1016
ErhI CCWWGG 2 cut(s) 935, 1177
FaeI CATG 4 cut(s) 782, 927, 1012, 1181
FalI AAGNNNNNCTT 4 cut(s) 300, 332, 1318, 1350
FaqI GGGAC 5 cut(s) 3, 247, 521, 941, 1279
FatI CATG 4 cut(s) 778, 923, 1008, 1177
FauI CCCGC 2 cut(s) 1153, 1256
FbaI TGATCA 1 cut(s) 331
Fnu4HI GCNGC 5 cut(s) 5, 129, 696, 1074, 1077
FriOI GRGCYC 1 cut(s) 1016
Fsp4HI GCNGC 5 cut(s) 5, 129, 696, 1074, 1077
FspBI CTAG 3 cut(s) 275, 657, 966
GluI GCNGC 5 cut(s) 5, 129, 696, 1074, 1077
GsuI CTGGAG 1 cut(s) 585
HaeIII GGCC 3 cut(s) 257, 963, 1164
HapII CCGG 4 cut(s) 175, 960, 1132, 1272
HgaI GACGC 2 cut(s) 1226, 1276
Hin1I GRCGYC 1 cut(s) 1268
Hin1II CATG 4 cut(s) 782, 927, 1012, 1181
HindIII AAGCTT 2 cut(s) 685, 1318
HinfI GANTC 4 cut(s) 83, 311, 812, 911
HpaII CCGG 4 cut(s) 175, 960, 1132, 1272
HphI GGTGA 2 cut(s) 78, 854
Hpy166II GTNNAC 1 cut(s) 554
Hpy188I TCNGA 8 cut(s) 208, 331, 336, 349, 430, 505, 811, 1332
Hpy188III TCNNGA 8 cut(s) 95, 275, 564, 611, 657, 1009, 1118, 1168
Hpy8I GTNNAC 1 cut(s) 554
Hpy99I CGWCG 1 cut(s) 1242
HpyAV CCTTC 7 cut(s) 442, 652, 723, 927, 961, 1273, 1342
HpyCH4III ACNGT 2 cut(s) 195, 464
HpyCH4IV ACGT 4 cut(s) 240, 271, 580, 679
HpyCH4V TGCA 6 cut(s) 4, 422, 554, 731, 791, 1356
HpyF10VI GCNNNNNNNGC 2 cut(s) 1082, 1310
HpyF3I CTNAG 1 cut(s) 516
HpySE526I ACGT 4 cut(s) 240, 271, 580, 679
Hsp92I GRCGYC 1 cut(s) 1268
Hsp92II CATG 4 cut(s) 782, 927, 1012, 1181
KpnI GGTACC 1 cut(s) 384
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 3 cut(s) 331, 529, 592
LmnI GCTCC 2 cut(s) 1222, 1234
Lsp1109I GCAGC 4 cut(s) 16, 115, 1060, 1063
LweI GCATC 4 cut(s) 100, 340, 502, 1024
MaeI CTAG 3 cut(s) 275, 657, 966
MaeII ACGT 4 cut(s) 240, 271, 580, 679
MaeIII GTNAC 2 cut(s) 241, 581
MalI GATC 3 cut(s) 333, 531, 594
MboI GATC 3 cut(s) 331, 529, 592
MboII GAAGA 8 cut(s) 39, 175, 225, 302, 320, 374, 807, 1288
MfeI CAATTG 1 cut(s) 987
MhlI GDGCHC 2 cut(s) 556, 1016
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 5 cut(s) 55, 343, 604, 981, 987
MluNI TGGCCA 1 cut(s) 257
MmeI TCCRAC 2 cut(s) 517, 1355
Mox20I TGGCCA 1 cut(s) 257
MscI TGGCCA 1 cut(s) 257
MseI TTAA 2 cut(s) 750, 897
MslI CAYNNNNRTG 1 cut(s) 422
Msp20I TGGCCA 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 37
MspI CCGG 4 cut(s) 175, 960, 1132, 1272
MunI CAATTG 1 cut(s) 987
Mva1269I GAATGC 2 cut(s) 27, 1265
MvaI CCWGG 5 cut(s) 473, 705, 1017, 1094, 1197
MwoI GCNNNNNNNGC 2 cut(s) 1082, 1310
NciI CCSGG 5 cut(s) 176, 960, 1133, 1272, 1273
NcoI CCATGG 1 cut(s) 1177
NdeII GATC 3 cut(s) 331, 529, 592
NlaIII CATG 4 cut(s) 782, 927, 1012, 1181
NlaIV GGNNCC 3 cut(s) 382, 439, 1218
NmuCI GTSAC 1 cut(s) 241
PaeR7I CTCGAG 1 cut(s) 1166
PagI TCATGA 1 cut(s) 1008
PasI CCCWGGG 1 cut(s) 1016
PcsI WCGNNNNNNNCGW 1 cut(s) 1254
PctI GAATGC 2 cut(s) 27, 1265
PfeI GAWTC 4 cut(s) 83, 311, 812, 911
PfoI TCCNGGA 1 cut(s) 1131
PkrI GCNGC 5 cut(s) 6, 130, 697, 1075, 1078
Ppu21I YACGTR 1 cut(s) 680
Psp6I CCWGG 5 cut(s) 471, 703, 1015, 1092, 1195
PspGI CCWGG 5 cut(s) 471, 703, 1015, 1092, 1195
PspN4I GGNNCC 3 cut(s) 382, 439, 1218
PspPI GGNCC 2 cut(s) 962, 1162
PvuII CAGCTG 1 cut(s) 37
RsaI GTAC 2 cut(s) 382, 889
RsaNI GTAC 2 cut(s) 381, 888
RseI CAYNNNNRTG 1 cut(s) 422
SaqAI TTAA 2 cut(s) 750, 897
SatI GCNGC 5 cut(s) 5, 129, 696, 1074, 1077
Sau3AI GATC 3 cut(s) 331, 529, 592
Sau96I GGNCC 2 cut(s) 962, 1162
SduI GDGCHC 2 cut(s) 556, 1016
SfaNI GCATC 4 cut(s) 100, 340, 502, 1024
Sfr274I CTCGAG 1 cut(s) 1166
SlaI CTCGAG 1 cut(s) 1166
SmaI CCCGGG 1 cut(s) 1273
SmiMI CAYNNNNRTG 1 cut(s) 422
SmlI CTYRAG 2 cut(s) 1166, 1324
SmoI CTYRAG 2 cut(s) 1166, 1324
SnaBI TACGTA 1 cut(s) 680
Sse9I AATT 5 cut(s) 55, 343, 604, 981, 987
SsiI CCGC 5 cut(s) 441, 696, 921, 1160, 1263
SspMI CTAG 3 cut(s) 275, 657, 966
StyI CCWWGG 2 cut(s) 935, 1177
TaaI ACNGT 2 cut(s) 195, 464
TaiI ACGT 4 cut(s) 243, 274, 583, 682
TaqI TCGA 3 cut(s) 909, 1167, 1248
TaqII GACCGA 1 cut(s) 1164
TasI AATT 5 cut(s) 55, 343, 604, 981, 987
TauI GCSGC 1 cut(s) 698
TfiI GAWTC 4 cut(s) 83, 311, 812, 911
Tru1I TTAA 2 cut(s) 750, 897
Tru9I TTAA 2 cut(s) 750, 897
TscAI CASTG 3 cut(s) 198, 424, 606
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 4 cut(s) 4, 128, 1073, 1076
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 7 cut(s) 68, 795, 807, 931, 997, 1064, 1125
TspMI CCCGGG 1 cut(s) 1271
TspRI CASTG 3 cut(s) 198, 424, 606
VneI GTGCAC 1 cut(s) 552
XapI RAATTY 2 cut(s) 343, 604
XbaI TCTAGA 2 cut(s) 274, 656
XcmI CCANNNNNNNNNTGG 1 cut(s) 75
XhoI CTCGAG 1 cut(s) 1166
XmaI CCCGGG 1 cut(s) 1271
XspI CTAG 3 cut(s) 275, 657, 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.