pycom08g09830
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0006637
Physical Location & Seq
Reverse (-)
8156196 .. 8157561
1366 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g09830.3

Sequence Viewer

Length: 360 bp
ATGGAAGGTGAAAGAACAAATTCTACTCCTTCAGAAGTGCTCGGTGACAACAATCAGAAAGTTCGAGCTCTCCATGGGAGGACTAGTGGACCTACGAGGCGTTCTACGAAGGGACAATGGACACCCGAAGAGGATGAGATTTTGCGGAGGGCGGTTCAGCGTTTTAAAGGAAAGAATTGGAAAAAAATAGCGGAGTGTTTCAAGGATCGGACTGATGTGCAATGCCTACATAGATGGCAGAAAGTCTTGAATCCCGAACTGGTCAAAGGTCCGTGGTCTAAAGAGATTTTTTGTCGGATCAATCTCAAATTTCTCTTTTTTACATGCAATGTTTTCTTACTGTTCTGCAAAATTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006275 GO:0006355 GO:0006357 GO:0008150 GO:0008285 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009623 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0032875 GO:0042127 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051704 GO:0051707 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0090329 GO:0097159 GO:0140110 GO:1901181 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04151 ko04218 ko05166 map04151 map04218 map05166
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

120

Amino Acids

14.03

Weight (kDa)

9.67

Isoelectric Point (pI)

33.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 145, 152, 191
AclWI GGATC 2 cut(s) 213, 305
AcsI RAATTY 2 cut(s) 19, 308
AcuI CTGAAG 1 cut(s) 15
AgsI TTSAA 2 cut(s) 202, 250
AhlI ACTAGT 1 cut(s) 83
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw21I GWGCWC 2 cut(s) 42, 70
AlwI GGATC 2 cut(s) 213, 305
ApoI RAATTY 2 cut(s) 19, 308
Asp700I GAANNNNTTC 1 cut(s) 19
AspS9I GGNCC 2 cut(s) 89, 269
AsuHPI GGTGA 2 cut(s) 20, 56
AvaII GGWCC 2 cut(s) 89, 269
BanII GRGCYC 1 cut(s) 70
Bbv12I GWGCWC 2 cut(s) 42, 70
BccI CCATC 1 cut(s) 228
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 1 cut(s) 84
Bme18I GGWCC 2 cut(s) 89, 269
BmgT120I GGNCC 2 cut(s) 89, 269
BsaJI CCNNGG 2 cut(s) 73, 272
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bse1I ACTGG 1 cut(s) 264
Bse3DI GCAATG 2 cut(s) 227, 334
BseDI CCNNGG 2 cut(s) 73, 272
BseGI GGATG 1 cut(s) 139
BseMI GCAATG 2 cut(s) 227, 334
BseNI ACTGG 1 cut(s) 264
BsiHKAI GWGCWC 2 cut(s) 42, 70
BslFI GGGAC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 126
Bsp1286I GDGCHC 2 cut(s) 42, 70
Bsp143I GATC 2 cut(s) 205, 297
Bsp19I CCATGG 1 cut(s) 73
BspACI CCGC 3 cut(s) 145, 152, 191
BspPI GGATC 2 cut(s) 213, 305
BsrDI GCAATG 2 cut(s) 227, 334
BsrI ACTGG 1 cut(s) 264
BssECI CCNNGG 2 cut(s) 73, 272
BssMI GATC 2 cut(s) 205, 297
BssT1I CCWWGG 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 342
Bst6I CTCTTC 1 cut(s) 123
BstDSI CCRYGG 2 cut(s) 73, 272
BstF5I GGATG 1 cut(s) 139
BstKTI GATC 2 cut(s) 208, 300
BstMBI GATC 2 cut(s) 205, 297
BstNSI RCATGY 1 cut(s) 327
BtgI CCRYGG 2 cut(s) 73, 272
BtsCI GGATG 1 cut(s) 139
Cfr13I GGNCC 2 cut(s) 89, 269
CviAII CATG 2 cut(s) 74, 324
CviJI RGCY 1 cut(s) 68
CviKI_1 RGCY 1 cut(s) 68
DpnI GATC 2 cut(s) 207, 299
DpnII GATC 2 cut(s) 205, 297
DraI TTTAAA 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Ecl136II GAGCTC 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 73
Eco24I GRGCYC 1 cut(s) 70
Eco47I GGWCC 2 cut(s) 89, 269
Eco53kI GAGCTC 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 15
EcoICRI GAGCTC 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 73
EcoT38I GRGCYC 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 2 cut(s) 77, 327
FaiI YATR 3 cut(s) 75, 231, 325
FaqI GGGAC 1 cut(s) 126
FatI CATG 2 cut(s) 73, 323
FokI GGATG 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 70
FspBI CTAG 1 cut(s) 84
Hin1II CATG 2 cut(s) 77, 327
HinfI GANTC 1 cut(s) 250
HphI GGTGA 2 cut(s) 20, 56
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 4 cut(s) 34, 57, 210, 297
Hpy188III TCNNGA 2 cut(s) 247, 254
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 2 cut(s) 39, 103
HpyCH4III ACNGT 1 cut(s) 342
HpyCH4V TGCA 3 cut(s) 220, 327, 348
Hsp92II CATG 2 cut(s) 77, 327
Kzo9I GATC 2 cut(s) 205, 297
LpnPI CCDG 1 cut(s) 245
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 44
MalI GATC 2 cut(s) 207, 299
MboI GATC 2 cut(s) 205, 297
MboII GAAGA 1 cut(s) 140
MhlI GDGCHC 2 cut(s) 42, 70
MluCI AATT 4 cut(s) 19, 175, 308, 351
MmeI TCCRAC 1 cut(s) 275
MnlI CCTC 4 cut(s) 72, 90, 124, 141
MroXI GAANNNNTTC 1 cut(s) 19
MseI TTAA 1 cut(s) 165
NcoI CCATGG 1 cut(s) 73
NdeII GATC 2 cut(s) 205, 297
NlaIII CATG 2 cut(s) 77, 327
NmuCI GTSAC 1 cut(s) 44
NspI RCATGY 1 cut(s) 327
PdmI GAANNNNTTC 1 cut(s) 19
PfeI GAWTC 1 cut(s) 250
Psp124BI GAGCTC 1 cut(s) 70
PspPI GGNCC 2 cut(s) 89, 269
PsrI GAACNNNNNNTAC 2 cut(s) 7, 39
SacI GAGCTC 1 cut(s) 70
SaqAI TTAA 1 cut(s) 165
Sau3AI GATC 2 cut(s) 205, 297
Sau96I GGNCC 2 cut(s) 89, 269
SduI GDGCHC 2 cut(s) 42, 70
SetI ASST 4 cut(s) 10, 70, 94, 271
SinI GGWCC 2 cut(s) 89, 269
SpeI ACTAGT 1 cut(s) 83
Sse9I AATT 4 cut(s) 19, 175, 308, 351
SsiI CCGC 3 cut(s) 145, 152, 191
SspMI CTAG 1 cut(s) 84
SstI GAGCTC 1 cut(s) 70
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 1 cut(s) 342
TaqI TCGA 1 cut(s) 64
TasI AATT 4 cut(s) 19, 175, 308, 351
TfiI GAWTC 1 cut(s) 250
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TseFI GTSAC 1 cut(s) 44
Tsp45I GTSAC 1 cut(s) 44
TspGWI ACGGA 1 cut(s) 261
VpaK11BI GGWCC 2 cut(s) 89, 269
XapI RAATTY 2 cut(s) 19, 308
XceI RCATGY 1 cut(s) 327
XmnI GAANNNNTTC 1 cut(s) 19
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.