Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0009077

Physical Location & Seq

Genomic Coordinates Forward (+)

9614525 .. 9617362

Gene Structure 2838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g11370.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGCTGGCTCATATGCAGCTCAAGTTCAAGACTGCAGAGTTGCAGCAAGAAGTGGTGCTTCAAGACCTTCCCAAGGCAATCAGATCCAGCATTGCCCACCATCTTTTCCAAAAAACCGTTGAGAAAACCTACCTGTTCAAAGGAGTCTCTGAACACCTTACTGTCCAATTGATTTCAGAGATGAAAGCAGAATATTTTCCACCTAAAGTTGACATCATCTTACAAAACGAAATCCCAACAGATTTCTACATTCTAGTAACTGGAGCATTGGACGTGCTGAAGTACAAGAACGGCACAGAACAGTTTTTGTCAAACCTAGGATCTGCAGACTTGGTAGGAGAAATTGGGATATGTTTCAACATCCCCCAACCTTTTACAGTGAGAACAAAAAAGCTTTCTCAGGTTATTCGGATCAGTCATCAATCATTCAAGCAAATGGTACAGTCACAGAATGAAGACAGCAAGATAATATTCAAAAACTTAATCGAGCACTTGAGAGACTTGCAAACAGAGGTGCGAGAAGAACTACCGTTTCTAACAGAATTGTTGGATGACCTAAATATAGAGCATATACAACCAAACGAACCAGTGAATTACCAAGGAGAAGCTAACACGGAAGAAACAAGCGAAACTTCCACTCCGGGGCCAATTCCTATGAGAGTCATAATTCACGGACATCATCCAGATGAAGGTTACACGAATGGAAAACTCATTCATTTGCCCGAGTCAGTGGAAGACCTTCTGAAATTAGCAGAGAAAAAGTTGGGAAAAAGAGGGAGCACGGTTATGATGGCGGACGGCTCACAGGTCGAAGAGCTAAACGCATTAAGAGACAACGACCGCTTGTTTATCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ion_trans KHA cNMP_binding

Protein Analysis

286

Amino Acids

32.47

Weight (kDa)

5.4

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32650 AT4G32650 AT4G32650
fragaria_vesca	FvH4_2g30280 FvH4_2g30280
malus_domestica	MD08G1134700.v1.1 MD15G1113600.v1.1
prunus_persica	Prupe.1G464600_v2.0.a1 Prupe.1G464600_v2.0.a1
pyrus_communis	pycom08g11370
rosa_chinensis	RchiOBHm_Chr6g0312591
rosa_laevigata	RLG00000010313
rosa_multiflora	Rmu_co8350831.1_g000001 Rmu_sc0003094.1_g000003 Rmu_sc0008363.1_g000002
rosa_roxburghii	Rroxscaffold_7G00156670
rosa_rugosa	Rorug06G0396700
rosa_samantha	Rh6AG514600 Rh6BG525400 Rh6CG530600 Rh6DG516700
rosa_wichuraiana	Rw6G044710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	794, 841
AclWI	GGATC	3 cut(s)	78, 328, 419
AcuI	CTGAAG	1 cut(s)	299
AfaI	GTAC	2 cut(s)	284, 441
AfiI	CCNNNNNNNGG	3 cut(s)	73, 642, 689
AgsI	TTSAA	6 cut(s)	28, 62, 139, 358, 430, 475
AjiI	CACGTC	1 cut(s)	274
AluBI	AGCT	4 cut(s)	19, 394, 608, 817
AluI	AGCT	4 cut(s)	19, 394, 608, 817
Alw21I	GWGCWC	2 cut(s)	492, 782
Alw26I	GTCTC	3 cut(s)	151, 492, 825
AlwI	GGATC	3 cut(s)	78, 328, 419
Ama87I	CYCGRG	1 cut(s)	722
AoxI	GGCC	1 cut(s)	644
ApeKI	GCWGC	2 cut(s)	16, 43
Asp700I	GAANNNNTTC	2 cut(s)	195, 738
AspA2I	CCTAGG	1 cut(s)	316
AspS9I	GGNCC	1 cut(s)	644
AsuC2I	CCSGG	1 cut(s)	642
AvaI	CYCGRG	1 cut(s)	722
AvrII	CCTAGG	1 cut(s)	316
BbsI	GAAGAC	2 cut(s)	462, 741
Bbv12I	GWGCWC	2 cut(s)	492, 782
BbvI	GCAGC	2 cut(s)	28, 55
BccI	CCATC	2 cut(s)	108, 784
BceAI	ACGGC	2 cut(s)	307, 814
BcnI	CCSGG	1 cut(s)	642
BcoDI	GTCTC	3 cut(s)	151, 492, 825
BfaI	CTAG	2 cut(s)	254, 317
BfmI	CTRYAG	2 cut(s)	33, 324
BisI	GCNGC	2 cut(s)	17, 44
BlnI	CCTAGG	1 cut(s)	316
BlsI	GCNGC	2 cut(s)	18, 45
Bme1390I	CCNGG	1 cut(s)	642
BmeT110I	CYCGRG	1 cut(s)	722
BmgBI	CACGTC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	644
BmiI	GGNNCC	1 cut(s)	645
BmrFI	CCNGG	1 cut(s)	642
BpiI	GAAGAC	2 cut(s)	462, 741
BpmI	CTGGAG	1 cut(s)	282
BpuEI	CTTGAG	2 cut(s)	5, 514
BpuMI	CCSGG	1 cut(s)	642
BsaJI	CCNNGG	4 cut(s)	72, 316, 598, 641
BsaXI	ACNNNNNCTCC	2 cut(s)	622, 652
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 642, 689
Bse1I	ACTGG	2 cut(s)	265, 587
Bse3DI	GCAATG	1 cut(s)	90
BseDI	CCNNGG	4 cut(s)	72, 316, 598, 641
BseGI	GGATG	3 cut(s)	360, 556, 679
BseLI	CCNNNNNNNGG	3 cut(s)	73, 642, 689
BseMI	GCAATG	1 cut(s)	90
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	2 cut(s)	265, 587
BseXI	GCAGC	2 cut(s)	28, 55
Bsh1285I	CGRYCG	1 cut(s)	841
BshFI	GGCC	1 cut(s)	646
BsiEI	CGRYCG	1 cut(s)	841
BsiHKAI	GWGCWC	2 cut(s)	492, 782
BsiHKCI	CYCGRG	1 cut(s)	722
BsiSI	CCGG	1 cut(s)	641
BslI	CCNNNNNNNGG	3 cut(s)	73, 642, 689
BsmAI	GTCTC	3 cut(s)	151, 492, 825
BsnI	GGCC	1 cut(s)	646
BsoBI	CYCGRG	1 cut(s)	722
Bsp1286I	GDGCHC	2 cut(s)	492, 782
Bsp143I	GATC	3 cut(s)	83, 320, 411
BspACI	CCGC	2 cut(s)	794, 841
BspANI	GGCC	1 cut(s)	646
BspCNI	CTCAG	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	645
BspMAI	CTGCAG	2 cut(s)	37, 328
BspPI	GGATC	3 cut(s)	78, 328, 419
BspQI	GCTCTTC	1 cut(s)	807
BsrDI	GCAATG	1 cut(s)	90
BsrI	ACTGG	2 cut(s)	265, 587
BssECI	CCNNGG	4 cut(s)	72, 316, 598, 641
BssMI	GATC	3 cut(s)	83, 320, 411
BssT1I	CCWWGG	3 cut(s)	72, 316, 598
Bst4CI	ACNGT	7 cut(s)	118, 163, 303, 379, 444, 531, 784
Bst6I	CTCTTC	1 cut(s)	807
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	399
BstENI	CCTNNNNNAGG	1 cut(s)	71
BstF5I	GGATG	3 cut(s)	360, 556, 679
BstKTI	GATC	3 cut(s)	86, 323, 414
BstMAI	GTCTC	3 cut(s)	151, 492, 825
BstMBI	GATC	3 cut(s)	83, 320, 411
BstMCI	CGRYCG	1 cut(s)	841
BstSCI	CCNGG	1 cut(s)	640
BstSFI	CTRYAG	2 cut(s)	33, 324
BstV1I	GCAGC	2 cut(s)	28, 55
BstV2I	GAAGAC	2 cut(s)	462, 741
BstX2I	RGATCY	2 cut(s)	83, 320
BstYI	RGATCY	2 cut(s)	83, 320
BsuRI	GGCC	1 cut(s)	646
BtrI	CACGTC	1 cut(s)	274
BtsCI	GGATG	3 cut(s)	360, 556, 679
BtsIMutI	CAGTG	3 cut(s)	384, 594, 735
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	644
Csp6I	GTAC	2 cut(s)	283, 440
CviJI	RGCY	7 cut(s)	8, 19, 394, 608, 646, 801, 817
CviKI_1	RGCY	7 cut(s)	8, 19, 394, 608, 646, 801, 817
CviQI	GTAC	2 cut(s)	283, 440
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	3 cut(s)	85, 322, 413
DpnII	GATC	3 cut(s)	83, 320, 411
Eam1104I	CTCTTC	1 cut(s)	807
EarI	CTCTTC	1 cut(s)	807
EciI	GGCGGA	1 cut(s)	809
Eco130I	CCWWGG	3 cut(s)	72, 316, 598
Eco57I	CTGAAG	1 cut(s)	299
Eco88I	CYCGRG	1 cut(s)	722
EcoNI	CCTNNNNNAGG	1 cut(s)	71
EcoT14I	CCWWGG	3 cut(s)	72, 316, 598
ErhI	CCWWGG	3 cut(s)	72, 316, 598
FaiI	YATR	9 cut(s)	12, 14, 352, 563, 570, 572, 656, 665, 788
FalI	AAGNNNNNCTT	4 cut(s)	42, 74, 616, 648
FauNDI	CATATG	1 cut(s)	12
Fnu4HI	GCNGC	2 cut(s)	17, 44
FokI	GGATG	3 cut(s)	347, 563, 666
Fsp4HI	GCNGC	2 cut(s)	17, 44
FspBI	CTAG	2 cut(s)	254, 317
GluI	GCNGC	2 cut(s)	17, 44
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	646
HapII	CCGG	1 cut(s)	641
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	3 cut(s)	144, 660, 725
HpaII	CCGG	1 cut(s)	641
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	5 cut(s)	83, 151, 178, 411, 744
Hpy188III	TCNNGA	3 cut(s)	28, 62, 683
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	3 cut(s)	77, 683, 749
HpyCH4III	ACNGT	7 cut(s)	118, 163, 303, 379, 444, 531, 784
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	5 cut(s)	16, 35, 43, 326, 505
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	1 cut(s)	273
Kzo9I	GATC	3 cut(s)	83, 320, 411
LguI	GCTCTTC	1 cut(s)	807
LmnI	GCTCC	2 cut(s)	263, 777
LpnPI	CCDG	8 cut(s)	100, 146, 246, 386, 600, 654, 696, 791
Lsp1109I	GCAGC	2 cut(s)	28, 55
MaeI	CTAG	2 cut(s)	254, 317
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	3 cut(s)	256, 444, 692
MalI	GATC	3 cut(s)	85, 322, 413
MboI	GATC	3 cut(s)	83, 320, 411
MboII	GAAGA	5 cut(s)	467, 533, 629, 746, 824
MfeI	CAATTG	1 cut(s)	167
MflI	RGATCY	2 cut(s)	83, 320
MhlI	GDGCHC	2 cut(s)	492, 782
MluCI	AATT	7 cut(s)	167, 342, 542, 592, 648, 666, 746
MlyI	GAGTC	3 cut(s)	153, 669, 734
MmeI	TCCRAC	1 cut(s)	528
MnlI	CCTC	2 cut(s)	505, 767
MroXI	GAANNNNTTC	2 cut(s)	195, 738
MseI	TTAA	2 cut(s)	482, 827
MslI	CAYNNNNRTG	2 cut(s)	684, 785
MspI	CCGG	1 cut(s)	641
MspR9I	CCNGG	1 cut(s)	642
MunI	CAATTG	1 cut(s)	167
NciI	CCSGG	1 cut(s)	642
NdeI	CATATG	1 cut(s)	12
NdeII	GATC	3 cut(s)	83, 320, 411
NlaIV	GGNNCC	1 cut(s)	645
NmuCI	GTSAC	1 cut(s)	444
PciSI	GCTCTTC	1 cut(s)	807
PdmI	GAANNNNTTC	2 cut(s)	195, 738
PkrI	GCNGC	2 cut(s)	18, 45
PleI	GAGTC	3 cut(s)	152, 668, 733
PpsI	GAGTC	3 cut(s)	152, 668, 733
PspN4I	GGNNCC	1 cut(s)	645
PspPI	GGNCC	1 cut(s)	644
PstI	CTGCAG	2 cut(s)	37, 328
PsuI	RGATCY	2 cut(s)	83, 320
RsaI	GTAC	2 cut(s)	284, 441
RsaNI	GTAC	2 cut(s)	283, 440
RseI	CAYNNNNRTG	2 cut(s)	684, 785
SapI	GCTCTTC	1 cut(s)	807
SaqAI	TTAA	2 cut(s)	482, 827
SatI	GCNGC	2 cut(s)	17, 44
Sau3AI	GATC	3 cut(s)	83, 320, 411
Sau96I	GGNCC	1 cut(s)	644
SchI	GAGTC	3 cut(s)	153, 669, 734
ScrFI	CCNGG	1 cut(s)	642
SduI	GDGCHC	2 cut(s)	492, 782
SfcI	CTRYAG	2 cut(s)	33, 324
SmiMI	CAYNNNNRTG	2 cut(s)	684, 785
SmlI	CTYRAG	2 cut(s)	20, 493
SmoI	CTYRAG	2 cut(s)	20, 493
Sse9I	AATT	7 cut(s)	167, 342, 542, 592, 648, 666, 746
SsiI	CCGC	2 cut(s)	794, 841
SspI	AATATT	2 cut(s)	194, 471
SspMI	CTAG	2 cut(s)	254, 317
StyD4I	CCNGG	1 cut(s)	640
StyI	CCWWGG	3 cut(s)	72, 316, 598
TaaI	ACNGT	7 cut(s)	118, 163, 303, 379, 444, 531, 784
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	2 cut(s)	486, 810
TasI	AATT	7 cut(s)	167, 342, 542, 592, 648, 666, 746
TatI	WGTACW	1 cut(s)	282
Tru1I	TTAA	2 cut(s)	482, 827
Tru9I	TTAA	2 cut(s)	482, 827
TscAI	CASTG	3 cut(s)	384, 594, 735
TseFI	GTSAC	1 cut(s)	444
TseI	GCWGC	2 cut(s)	16, 43
Tsp45I	GTSAC	1 cut(s)	444
TspDTI	ATGAA	4 cut(s)	197, 468, 702, 704
TspGWI	ACGGA	2 cut(s)	629, 687
TspRI	CASTG	3 cut(s)	384, 594, 735
XagI	CCTNNNNNAGG	1 cut(s)	71
XmaJI	CCTAGG	1 cut(s)	316
XmnI	GAANNNNTTC	2 cut(s)	195, 738
XspI	CTAG	2 cut(s)	254, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.