Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009077

Physical Location & Seq

Genomic Coordinates Reverse (-)

71711914 .. 71718089

Gene Structure 6176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG525400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGTCGTCGTCATTCATAACGGCGTCGCCCCTGCCTTTTCTGCTCCGAAGGCGCTCGAGTGGCGAAATCAGGAATTTGGCCTCGGTTTCGAGCAGCATATTGCCCGCTTTTGGAACCGTCATCGATGACGGCCACTTGCAGACCAAGAAATTTGTTGTTGCTCCCTACGATAGGAGATATCGGTATGTTACGAGATATTACTTCGCAATGGACGTAGCCTCAACTGTACCGTTTCAATCGCTTCACAGGCTCTTCACTGGGCATACGCACAATAGCCTGGTCTTTGGCATCCTCAATCTGCTTCGTCTCTGGCGTCTCCGGCGCGTCAGTGAACTCTTTAAAAGGCTAGAGAAAGACACTCGCTTTAGTTACTTTTGGATCAGATACGTCAAACTCATATGTGACGTGCTAATATACAAGAACGGCACAGAACAGTTCTTGTCAAATCTAGGATCTGCAGACATGGTAGGAGAGTTTGGCGTATTTTTCAATATCCCACAACCTTTTACAGTGAGAACAAAAAGGCTTTCTCAAGTTATCCGCATCAGTCATCAGTATTTCAAGCAAATGATCCAGCCACAGAATGAAGACGCAAAGATAATCATCACAAACTTTACTCAGCACTTGAAGGACTTAAAACAGGAGGTGTTACAAGAAATTCCATTTCTACCAGAATTGCTGGAAGAACTGAATACAGAGCAGCTTGAATGGACATATAATTCTACTTCTCTGGACTTTAATCAGAAAGACTTTAGGTTTCATCATTCAGGAACAAACAAAACTTGTGCTCCAGGGCCTATCACCATGAGAGTCATAATTCATGGCCATCATCCAAATGAAGGCGGCTCGAAAGGAAAACTTATTCATCTGCCGGATTCAATAGACGACCTTCTGAGATTAGCAGAGAAAAAGTTGGAAAAAAGAGGAAGCACAGTTGTCATGGCCGACGGCTCAGCGGTTGAAGAACTGAATGCTTTGAGAGACAATGATCACTTGTTTATCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ion_trans KHA cNMP_binding

Protein Analysis

335

Amino Acids

38.78

Weight (kDa)

9.3

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	50 - 138	3.4e-09	Ion transport protein
cNMP_binding	PF00027	138 - 192	2.5e-07	Cyclic nucleotide-binding domain
KHA	PF11834	270 - 334	1e-21	KHA, dimerisation domain of potassium ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32650 AT4G32650 AT4G32650
fragaria_vesca	FvH4_2g30280 FvH4_2g30280
malus_domestica	MD08G1134700.v1.1 MD15G1113600.v1.1
prunus_persica	Prupe.1G464600_v2.0.a1 Prupe.1G464600_v2.0.a1
pyrus_communis	pycom08g11370
rosa_chinensis	RchiOBHm_Chr6g0312591
rosa_laevigata	RLG00000010313
rosa_multiflora	Rmu_co8350831.1_g000001 Rmu_sc0003094.1_g000003 Rmu_sc0008363.1_g000002
rosa_roxburghii	Rroxscaffold_7G00156670
rosa_rugosa	Rorug06G0396700
rosa_samantha	Rh6AG514600 Rh6BG525400 Rh6CG530600 Rh6DG516700
rosa_wichuraiana	Rw6G044710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	324
AciI	CCGC	4 cut(s)	105, 541, 843, 956
AclWI	GGATC	3 cut(s)	386, 460, 565
AcoI	YGGCCR	3 cut(s)	130, 823, 942
AcsI	RAATTY	3 cut(s)	73, 149, 657
AcyI	GRCGYC	2 cut(s)	23, 313
AfaI	GTAC	1 cut(s)	228
AfiI	CCNNNNNNNGG	3 cut(s)	110, 171, 839
AgsI	TTSAA	7 cut(s)	236, 490, 562, 628, 707, 879, 962
AjiI	CACGTC	1 cut(s)	406
AjnI	CCWGG	2 cut(s)	276, 790
AluBI	AGCT	1 cut(s)	703
AluI	AGCT	1 cut(s)	703
Alw21I	GWGCWC	1 cut(s)	790
Alw26I	GTCTC	3 cut(s)	311, 320, 975
AlwI	GGATC	3 cut(s)	386, 460, 565
Ama87I	CYCGRG	1 cut(s)	55
AoxI	GGCC	5 cut(s)	78, 130, 794, 823, 942
ApeKI	GCWGC	2 cut(s)	93, 700
ApoI	RAATTY	3 cut(s)	73, 149, 657
AspLEI	GCGC	2 cut(s)	54, 324
AspS9I	GGNCC	1 cut(s)	794
AsuHPI	GGTGA	1 cut(s)	793
AvaI	CYCGRG	1 cut(s)	55
BalI	TGGCCA	1 cut(s)	825
BbsI	GAAGAC	1 cut(s)	594
Bbv12I	GWGCWC	1 cut(s)	790
BbvI	GCAGC	2 cut(s)	105, 712
BccI	CCATC	1 cut(s)	834
BceAI	ACGGC	4 cut(s)	36, 145, 439, 964
BciT130I	CCWGG	2 cut(s)	278, 792
BclI	TGATCA	1 cut(s)	988
BcoDI	GTCTC	3 cut(s)	311, 320, 975
BfaI	CTAG	2 cut(s)	347, 449
BfmI	CTRYAG	1 cut(s)	456
BfoI	RGCGCY	1 cut(s)	55
BisI	GCNGC	3 cut(s)	94, 701, 844
BlpI	GCTNAGC	1 cut(s)	952
BlsI	GCNGC	3 cut(s)	95, 702, 845
Bme1390I	CCNGG	2 cut(s)	278, 792
BmeT110I	CYCGRG	1 cut(s)	55
BmgBI	CACGTC	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	794
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	2 cut(s)	278, 792
BmrI	ACTGGG	1 cut(s)	267
BmsI	GCATC	2 cut(s)	297, 552
BmuI	ACTGGG	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	594
BpmI	CTGGAG	1 cut(s)	774
Bpu1102I	GCTNAGC	1 cut(s)	952
BpuEI	CTTGAG	1 cut(s)	516
Bsa29I	ATCGAT	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	602
BsaHI	GRCGYC	2 cut(s)	23, 313
BsaJI	CCNNGG	2 cut(s)	81, 791
BsaXI	ACNNNNNCTCC	2 cut(s)	772, 802
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 171, 839
Bse1I	ACTGG	1 cut(s)	262
Bse3DI	GCAATG	1 cut(s)	213
Bse8I	GATNNNNATC	1 cut(s)	602
BseBI	CCWGG	2 cut(s)	278, 792
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	2 cut(s)	81, 791
BseGI	GGATG	2 cut(s)	288, 829
BseJI	GATNNNNATC	1 cut(s)	602
BseLI	CCNNNNNNNGG	3 cut(s)	110, 171, 839
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	3 cut(s)	632, 884, 966
BseNI	ACTGG	1 cut(s)	262
BseXI	GCAGC	2 cut(s)	105, 712
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	5 cut(s)	80, 132, 796, 825, 944
BshVI	ATCGAT	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	790
BsiHKCI	CYCGRG	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	319, 872
BslI	CCNNNNNNNGG	3 cut(s)	110, 171, 839
BsmAI	GTCTC	3 cut(s)	311, 320, 975
BsmBI	CGTCTC	2 cut(s)	311, 320
BsmI	GAATGC	1 cut(s)	976
BsnI	GGCC	5 cut(s)	80, 132, 796, 825, 944
BsoBI	CYCGRG	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	790
Bsp143I	GATC	4 cut(s)	378, 452, 570, 988
Bsp1720I	GCTNAGC	1 cut(s)	952
BspACI	CCGC	4 cut(s)	105, 541, 843, 956
BspANI	GGCC	5 cut(s)	80, 132, 796, 825, 944
BspCNI	CTCAG	3 cut(s)	631, 885, 965
BspDI	ATCGAT	1 cut(s)	123
BspFNI	CGCG	1 cut(s)	324
BspLI	GGNNCC	1 cut(s)	115
BspMAI	CTGCAG	1 cut(s)	460
BspPI	GGATC	3 cut(s)	386, 460, 565
BspQI	GCTCTTC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	2 cut(s)	81, 791
BssMI	GATC	4 cut(s)	378, 452, 570, 988
BssNI	GRCGYC	2 cut(s)	23, 313
Bst2UI	CCWGG	2 cut(s)	278, 792
Bst4CI	ACNGT	6 cut(s)	118, 226, 231, 435, 511, 934
Bst6I	CTCTTC	1 cut(s)	257
BstACI	GRCGYC	2 cut(s)	23, 313
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	3 cut(s)	618, 893, 952
BstENI	CCTNNNNNAGG	1 cut(s)	169
BstF5I	GGATG	2 cut(s)	288, 829
BstFNI	CGCG	1 cut(s)	324
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	2 cut(s)	54, 324
BstKTI	GATC	4 cut(s)	381, 455, 573, 991
BstMAI	GTCTC	3 cut(s)	311, 320, 975
BstMBI	GATC	4 cut(s)	378, 452, 570, 988
BstMWI	GCNNNNNNNGC	5 cut(s)	40, 49, 60, 247, 319
BstNI	CCWGG	2 cut(s)	278, 792
BstSCI	CCNGG	2 cut(s)	276, 790
BstSFI	CTRYAG	1 cut(s)	456
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	2 cut(s)	105, 712
BstV2I	GAAGAC	1 cut(s)	594
BstX2I	RGATCY	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	452
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	5 cut(s)	80, 132, 796, 825, 944
BsuTUI	ATCGAT	1 cut(s)	123
BtrI	CACGTC	1 cut(s)	406
BtsCI	GGATG	2 cut(s)	288, 829
BtsIMutI	CAGTG	3 cut(s)	255, 334, 516
Cac8I	GCNNGC	1 cut(s)	105
CfoI	GCGC	2 cut(s)	54, 324
Cfr13I	GGNCC	1 cut(s)	794
ClaI	ATCGAT	1 cut(s)	123
CseI	GACGC	4 cut(s)	12, 302, 313, 599
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	4 cut(s)	463, 805, 821, 940
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	3 cut(s)	618, 893, 952
DpnI	GATC	4 cut(s)	380, 454, 572, 990
DpnII	GATC	4 cut(s)	378, 452, 570, 988
DraI	TTTAAA	1 cut(s)	340
EaeI	YGGCCR	3 cut(s)	130, 823, 942
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Eco32I	GATATC	1 cut(s)	179
Eco88I	CYCGRG	1 cut(s)	55
EcoNI	CCTNNNNNAGG	1 cut(s)	169
EcoO109I	RGGNCCY	1 cut(s)	794
EcoRII	CCWGG	2 cut(s)	276, 790
EcoRV	GATATC	1 cut(s)	179
Esp3I	CGTCTC	2 cut(s)	311, 320
FaeI	CATG	4 cut(s)	466, 808, 824, 943
FalI	AAGNNNNNCTT	2 cut(s)	843, 875
FatI	CATG	4 cut(s)	462, 804, 820, 939
FauI	CCCGC	1 cut(s)	112
FauNDI	CATATG	1 cut(s)	398
FbaI	TGATCA	1 cut(s)	988
Fnu4HI	GCNGC	3 cut(s)	94, 701, 844
FokI	GGATG	2 cut(s)	275, 816
Fsp4HI	GCNGC	3 cut(s)	94, 701, 844
FspBI	CTAG	2 cut(s)	347, 449
GlaI	GCGC	2 cut(s)	53, 323
GluI	GCNGC	3 cut(s)	94, 701, 844
GsuI	CTGGAG	1 cut(s)	774
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	5 cut(s)	80, 132, 796, 825, 944
HapII	CCGG	2 cut(s)	319, 872
HgaI	GACGC	4 cut(s)	12, 302, 313, 599
HhaI	GCGC	2 cut(s)	54, 324
Hin1I	GRCGYC	2 cut(s)	23, 313
Hin1II	CATG	4 cut(s)	466, 808, 824, 943
Hin6I	GCGC	2 cut(s)	52, 322
HinP1I	GCGC	2 cut(s)	52, 322
HinfI	GANTC	2 cut(s)	810, 875
HpaII	CCGG	2 cut(s)	319, 872
HphI	GGTGA	1 cut(s)	793
Hpy166II	GTNNAC	1 cut(s)	332
Hpy188I	TCNGA	4 cut(s)	47, 383, 744, 894
Hpy188III	TCNNGA	3 cut(s)	70, 731, 768
Hpy8I	GTNNAC	1 cut(s)	332
Hpy99I	CGWCG	3 cut(s)	10, 28, 950
HpyAV	CCTTC	4 cut(s)	42, 622, 833, 899
HpyCH4III	ACNGT	6 cut(s)	118, 226, 231, 435, 511, 934
HpyCH4IV	ACGT	3 cut(s)	213, 387, 405
HpyCH4V	TGCA	2 cut(s)	139, 458
HpyF10VI	GCNNNNNNNGC	5 cut(s)	40, 49, 60, 247, 319
HpyF3I	CTNAG	3 cut(s)	618, 893, 952
HpySE526I	ACGT	3 cut(s)	213, 387, 405
Hsp92I	GRCGYC	2 cut(s)	23, 313
Hsp92II	CATG	4 cut(s)	466, 808, 824, 943
HspAI	GCGC	2 cut(s)	52, 322
Ksp22I	TGATCA	1 cut(s)	988
Kzo9I	GATC	4 cut(s)	378, 452, 570, 988
LguI	GCTCTTC	1 cut(s)	257
LmnI	GCTCC	3 cut(s)	48, 166, 793
Lsp1109I	GCAGC	2 cut(s)	105, 712
LweI	GCATC	2 cut(s)	297, 552
MaeI	CTAG	2 cut(s)	347, 449
MaeII	ACGT	3 cut(s)	213, 387, 405
MaeIII	GTNAC	4 cut(s)	187, 368, 401, 648
MalI	GATC	4 cut(s)	380, 454, 572, 990
MboI	GATC	4 cut(s)	378, 452, 570, 988
MboII	GAAGA	4 cut(s)	244, 599, 695, 974
MflI	RGATCY	1 cut(s)	452
MhlI	GDGCHC	1 cut(s)	790
MlsI	TGGCCA	1 cut(s)	825
MluCI	AATT	6 cut(s)	73, 149, 657, 674, 718, 816
MluNI	TGGCCA	1 cut(s)	825
MlyI	GAGTC	1 cut(s)	819
MmeI	TCCRAC	1 cut(s)	894
MnlI	CCTC	5 cut(s)	91, 229, 302, 637, 917
Mox20I	TGGCCA	1 cut(s)	825
MscI	TGGCCA	1 cut(s)	825
MseI	TTAA	3 cut(s)	339, 635, 738
MslI	CAYNNNNRTG	1 cut(s)	834
Msp20I	TGGCCA	1 cut(s)	825
MspA1I	CMGCKG	1 cut(s)	956
MspI	CCGG	2 cut(s)	319, 872
MspR9I	CCNGG	2 cut(s)	278, 792
Mva1269I	GAATGC	1 cut(s)	976
MvaI	CCWGG	2 cut(s)	278, 792
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	5 cut(s)	40, 49, 60, 247, 319
NdeI	CATATG	1 cut(s)	398
NdeII	GATC	4 cut(s)	378, 452, 570, 988
NlaIII	CATG	4 cut(s)	466, 808, 824, 943
NlaIV	GGNNCC	1 cut(s)	115
NmuCI	GTSAC	1 cut(s)	401
PaeR7I	CTCGAG	1 cut(s)	55
PciSI	GCTCTTC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	2 cut(s)	210, 310
PctI	GAATGC	1 cut(s)	976
PfeI	GAWTC	1 cut(s)	875
PkrI	GCNGC	3 cut(s)	95, 702, 845
PleI	GAGTC	1 cut(s)	818
PpsI	GAGTC	1 cut(s)	818
Psp6I	CCWGG	2 cut(s)	276, 790
PspGI	CCWGG	2 cut(s)	276, 790
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	794
PspXI	VCTCGAGB	1 cut(s)	55
PstI	CTGCAG	1 cut(s)	460
PsuI	RGATCY	1 cut(s)	452
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
RseI	CAYNNNNRTG	1 cut(s)	834
SapI	GCTCTTC	1 cut(s)	257
SaqAI	TTAA	3 cut(s)	339, 635, 738
SatI	GCNGC	3 cut(s)	94, 701, 844
Sau3AI	GATC	4 cut(s)	378, 452, 570, 988
Sau96I	GGNCC	1 cut(s)	794
SchI	GAGTC	1 cut(s)	819
ScrFI	CCNGG	2 cut(s)	278, 792
SduI	GDGCHC	1 cut(s)	790
SetI	ASST	8 cut(s)	216, 390, 408, 505, 648, 705, 758, 891
SfaNI	GCATC	2 cut(s)	297, 552
SfcI	CTRYAG	1 cut(s)	456
Sfr274I	CTCGAG	1 cut(s)	55
SlaI	CTCGAG	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	834
SmlI	CTYRAG	2 cut(s)	55, 531
SmoI	CTYRAG	2 cut(s)	55, 531
Sse9I	AATT	6 cut(s)	73, 149, 657, 674, 718, 816
SsiI	CCGC	4 cut(s)	105, 541, 843, 956
SspMI	CTAG	2 cut(s)	347, 449
StyD4I	CCNGG	2 cut(s)	276, 790
TaaI	ACNGT	6 cut(s)	118, 226, 231, 435, 511, 934
TaiI	ACGT	3 cut(s)	216, 390, 408
TaqI	TCGA	4 cut(s)	56, 89, 123, 848
TasI	AATT	6 cut(s)	73, 149, 657, 674, 718, 816
TauI	GCSGC	1 cut(s)	846
TfiI	GAWTC	1 cut(s)	875
Tru1I	TTAA	3 cut(s)	339, 635, 738
Tru9I	TTAA	3 cut(s)	339, 635, 738
TscAI	CASTG	3 cut(s)	262, 334, 516
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	2 cut(s)	93, 700
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	6 cut(s)	4, 600, 749, 809, 852, 854
TspRI	CASTG	3 cut(s)	262, 334, 516
XagI	CCTNNNNNAGG	1 cut(s)	169
XapI	RAATTY	3 cut(s)	73, 149, 657
XhoI	CTCGAG	1 cut(s)	55
XspI	CTAG	2 cut(s)	347, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.