Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8350831.1

Orthogroup ID

OG0009077

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 921

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8350831.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgcttgcccacatgcagctcaagttcaagacagcagagttacagcaggaagaagttctacaggaccttccgaaagcaataagatccagcattgcccaccatcttttccgtaaaaccattgataaaacatacctattcaaaggaatctctgaagagcttactgtccaattggtctcagagatgaaagcagaatattttccacccaaggtcgatattatcttgcaaaacgaaattccaacagacttttacattctagtagctggagctttggacgtgctaatatacaagaacggcacagaacagttcttgtcaaatctaggatctgcagacatggtaggagagtttggcgtatttttcaatatcccacaaccttttacagtgagaacaaaaaggctttctcaggttatccgcatcagtcatcagtatttcaagcaaatgatccagccacagaatgaagacgcaaagataatcatcacaaactttactcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ion_trans KHA cNMP_binding

Protein Analysis

163

Amino Acids

18.81

Weight (kDa)

6.42

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32650 AT4G32650 AT4G32650
fragaria_vesca	FvH4_2g30280 FvH4_2g30280
malus_domestica	MD08G1134700.v1.1 MD15G1113600.v1.1
prunus_persica	Prupe.1G464600_v2.0.a1 Prupe.1G464600_v2.0.a1
pyrus_communis	pycom08g11370
rosa_chinensis	RchiOBHm_Chr6g0312591
rosa_laevigata	RLG00000010313
rosa_multiflora	Rmu_co8350831.1_g000001 Rmu_sc0003094.1_g000003 Rmu_sc0008363.1_g000002
rosa_roxburghii	Rroxscaffold_7G00156670
rosa_rugosa	Rorug06G0396700
rosa_samantha	Rh6AG514600 Rh6BG525400 Rh6CG530600 Rh6DG516700
rosa_wichuraiana	Rw6G044710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	409
AclWI	GGATC	3 cut(s)	78, 328, 433
AcsI	RAATTY	1 cut(s)	231
AcuI	CTGAAG	1 cut(s)	171
AgsI	TTSAA	4 cut(s)	28, 139, 358, 430
AjiI	CACGTC	1 cut(s)	274
AluBI	AGCT	4 cut(s)	19, 157, 260, 266
AluI	AGCT	4 cut(s)	19, 157, 260, 266
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	3 cut(s)	78, 328, 433
ApeKI	GCWGC	1 cut(s)	16
ApoI	RAATTY	1 cut(s)	231
Asp700I	GAANNNNTTC	2 cut(s)	54, 195
AspS9I	GGNCC	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	64
BarI	GAAGNNNNNNTAC	2 cut(s)	42, 74
BbsI	GAAGAC	1 cut(s)	462
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	1 cut(s)	108
BceAI	ACGGC	1 cut(s)	307
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	2 cut(s)	254, 317
BfmI	CTRYAG	2 cut(s)	59, 324
BisI	GCNGC	1 cut(s)	17
BlsI	GCNGC	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	64
BmgBI	CACGTC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	64
BmsI	GCATC	1 cut(s)	420
BpiI	GAAGAC	1 cut(s)	462
BpmI	CTGGAG	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	5
BsaBI	GATNNNNATC	1 cut(s)	470
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	90
Bse8I	GATNNNNATC	1 cut(s)	470
BseDI	CCNNGG	1 cut(s)	204
BseJI	GATNNNNATC	1 cut(s)	470
BseMI	GCAATG	1 cut(s)	90
BseMII	CTCAG	2 cut(s)	189, 413
BseXI	GCAGC	1 cut(s)	28
BsmAI	GTCTC	1 cut(s)	178
Bso31I	GGTCTC	1 cut(s)	178
Bsp143I	GATC	3 cut(s)	83, 320, 438
BspACI	CCGC	1 cut(s)	409
BspCNI	CTCAG	2 cut(s)	188, 412
BspMAI	CTGCAG	1 cut(s)	328
BspPI	GGATC	3 cut(s)	78, 328, 433
BspQI	GCTCTTC	1 cut(s)	147
BspTNI	GGTCTC	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	3 cut(s)	83, 320, 438
BssT1I	CCWWGG	1 cut(s)	204
Bst4CI	ACNGT	3 cut(s)	163, 303, 379
Bst6I	CTCTTC	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	175, 399, 486
BstKTI	GATC	3 cut(s)	86, 323, 441
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	3 cut(s)	83, 320, 438
BstNSI	RCATGY	1 cut(s)	16
BstSFI	CTRYAG	2 cut(s)	59, 324
BstV1I	GCAGC	1 cut(s)	28
BstV2I	GAAGAC	1 cut(s)	462
BstX2I	RGATCY	2 cut(s)	83, 320
BstYI	RGATCY	2 cut(s)	83, 320
BtrI	CACGTC	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	1 cut(s)	467
CviAII	CATG	2 cut(s)	13, 331
CviJI	RGCY	6 cut(s)	19, 157, 260, 266, 394, 445
CviKI_1	RGCY	6 cut(s)	19, 157, 260, 266, 394, 445
DdeI	CTNAG	3 cut(s)	175, 399, 486
DpnI	GATC	3 cut(s)	85, 322, 440
DpnII	GATC	3 cut(s)	83, 320, 438
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	171
EcoO109I	RGGNCCY	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	2 cut(s)	16, 334
FaiI	YATR	4 cut(s)	14, 130, 283, 332
FatI	CATG	2 cut(s)	12, 330
Fnu4HI	GCNGC	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	17
FspBI	CTAG	2 cut(s)	254, 317
GluI	GCNGC	1 cut(s)	17
GsuI	CTGGAG	1 cut(s)	282
HgaI	GACGC	1 cut(s)	467
Hin1II	CATG	2 cut(s)	16, 334
HinfI	GANTC	1 cut(s)	144
Hpy188I	TCNGA	3 cut(s)	72, 151, 178
Hpy188III	TCNNGA	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	3 cut(s)	163, 303, 379
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	3 cut(s)	16, 223, 326
HpyF3I	CTNAG	3 cut(s)	175, 399, 486
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	2 cut(s)	16, 334
Kzo9I	GATC	3 cut(s)	83, 320, 438
LguI	GCTCTTC	1 cut(s)	147
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	6 cut(s)	32, 47, 100, 246, 386, 455
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	1 cut(s)	420
MaeI	CTAG	2 cut(s)	254, 317
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	39
MalI	GATC	3 cut(s)	85, 322, 440
MboI	GATC	3 cut(s)	83, 320, 438
MboII	GAAGA	3 cut(s)	62, 164, 467
MfeI	CAATTG	1 cut(s)	167
MflI	RGATCY	2 cut(s)	83, 320
MluCI	AATT	2 cut(s)	167, 231
MmeI	TCCRAC	1 cut(s)	260
MroXI	GAANNNNTTC	2 cut(s)	54, 195
MunI	CAATTG	1 cut(s)	167
NdeII	GATC	3 cut(s)	83, 320, 438
NlaIII	CATG	2 cut(s)	16, 334
NspI	RCATGY	1 cut(s)	16
PciSI	GCTCTTC	1 cut(s)	147
PdmI	GAANNNNTTC	2 cut(s)	54, 195
PfeI	GAWTC	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	18
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	64
PspPPI	RGGWCCY	1 cut(s)	64
PstI	CTGCAG	1 cut(s)	328
PsuI	RGATCY	2 cut(s)	83, 320
SapI	GCTCTTC	1 cut(s)	147
SatI	GCNGC	1 cut(s)	17
Sau3AI	GATC	3 cut(s)	83, 320, 438
Sau96I	GGNCC	1 cut(s)	64
SfaNI	GCATC	1 cut(s)	420
SfcI	CTRYAG	2 cut(s)	59, 324
SinI	GGWCC	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	2 cut(s)	167, 231
SsiI	CCGC	1 cut(s)	409
SspI	AATATT	1 cut(s)	194
SspMI	CTAG	2 cut(s)	254, 317
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	3 cut(s)	163, 303, 379
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	1 cut(s)	210
TasI	AATT	2 cut(s)	167, 231
TfiI	GAWTC	1 cut(s)	144
TscAI	CASTG	1 cut(s)	384
TseI	GCWGC	1 cut(s)	16
TspDTI	ATGAA	2 cut(s)	197, 468
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	384
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	1 cut(s)	231
XceI	RCATGY	1 cut(s)	16
XmnI	GAANNNNTTC	2 cut(s)	54, 195
XspI	CTAG	2 cut(s)	254, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.