Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006059

Physical Location & Seq

Genomic Coordinates Forward (+)

12084440 .. 12084679

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g13330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGGTGGACAGTCTGGACCAGTCCTTGCCCCTTCTCTCCGTCTCACAACTCATCAACTTCCTCAATTCGACCCTAGACGCCACTCTAACAGACCCAGACAACGAAGACACAAAAGCCAACGTCTCTCGAGCTCTCACGAAAGTCCACAAATTCGTCTCTTCCCCTTCACTGGACCAGGTCCCGTTTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinetochor_Ybp2

Protein Analysis

64

Amino Acids

6.93

Weight (kDa)

4.6

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030
fragaria_vesca	FvH4_2g28280 FvH4_2g28280 FvH4_2g28280 FvH4_2g28280
malus_domestica	MD15G1131200.v1.1
prunus_persica	Prupe.1G486500_v2.0.a1 Prupe.1G486500_v2.0.a1
pyrus_communis	pycom08g13330 pycom15g11830
rosa_chinensis	RchiOBHm_Chr6g0297191
rosa_laevigata	RLG00000011623
rosa_roxburghii	Rroxscaffold_7G00170800
rosa_rugosa	Rorug06G0269700
rosa_samantha	Rh6AG380800 Rh6BG388900 Rh6CG394200 Rh6DG380800
rosa_wichuraiana	Rw6G033160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	149
AcyI	GRCGYC	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	3 cut(s)	46, 127, 160
Ama87I	CYCGRG	1 cut(s)	126
ApoI	RAATTY	1 cut(s)	149
AspS9I	GGNCC	3 cut(s)	16, 172, 178
AvaI	CYCGRG	1 cut(s)	126
AvaII	GGWCC	3 cut(s)	16, 172, 178
BanII	GRGCYC	1 cut(s)	133
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	176
BcoDI	GTCTC	3 cut(s)	46, 127, 160
BfaI	CTAG	1 cut(s)	74
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	3 cut(s)	16, 172, 178
BmeT110I	CYCGRG	1 cut(s)	126
BmgT120I	GGNCC	3 cut(s)	16, 172, 178
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse1I	ACTGG	2 cut(s)	19, 174
BseBI	CCWGG	1 cut(s)	176
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseNI	ACTGG	2 cut(s)	19, 174
BsiHKAI	GWGCWC	1 cut(s)	133
BsiHKCI	CYCGRG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	3 cut(s)	46, 127, 160
BsmBI	CGTCTC	3 cut(s)	46, 127, 160
BsmFI	GGGAC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	19, 174
BssNI	GRCGYC	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	163
BstACI	GRCGYC	1 cut(s)	78
BstMAI	GTCTC	3 cut(s)	46, 127, 160
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	167
Cfr13I	GGNCC	3 cut(s)	16, 172, 178
CseI	GACGC	1 cut(s)	86
CsiI	ACCWGGT	1 cut(s)	174
CviJI	RGCY	2 cut(s)	116, 131
CviKI_1	RGCY	2 cut(s)	116, 131
Eam1104I	CTCTTC	1 cut(s)	163
EarI	CTCTTC	1 cut(s)	163
Ecl136II	GAGCTC	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	133
Eco47I	GGWCC	3 cut(s)	16, 172, 178
Eco53kI	GAGCTC	1 cut(s)	131
Eco88I	CYCGRG	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	133
Esp3I	CGTCTC	3 cut(s)	46, 127, 160
FaqI	GGGAC	1 cut(s)	164
FriOI	GRGCYC	1 cut(s)	133
FspBI	CTAG	1 cut(s)	74
HgaI	GACGC	1 cut(s)	86
Hin1I	GRCGYC	1 cut(s)	78
Hpy166II	GTNNAC	2 cut(s)	7, 145
Hpy188III	TCNNGA	3 cut(s)	14, 126, 136
Hpy8I	GTNNAC	2 cut(s)	7, 145
HpyAV	CCTTC	2 cut(s)	41, 174
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	120
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	1 cut(s)	78
LpnPI	CCDG	5 cut(s)	32, 108, 155, 161, 188
MabI	ACCWGGT	1 cut(s)	174
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	1 cut(s)	120
MboII	GAAGA	2 cut(s)	116, 150
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	2 cut(s)	64, 149
MnlI	CCTC	1 cut(s)	71
MseI	TTAA	1 cut(s)	190
MspR9I	CCNGG	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	176
NlaIV	GGNNCC	1 cut(s)	180
PaeR7I	CTCGAG	1 cut(s)	126
PflFI	GACNNNGTC	1 cut(s)	176
PpuMI	RGGWCCY	1 cut(s)	178
Psp124BI	GAGCTC	1 cut(s)	133
Psp5II	RGGWCCY	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	3 cut(s)	16, 172, 178
PspPPI	RGGWCCY	1 cut(s)	178
PsyI	GACNNNGTC	1 cut(s)	176
SacI	GAGCTC	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	190
Sau96I	GGNCC	3 cut(s)	16, 172, 178
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	3 cut(s)	123, 133, 180
SexAI	ACCWGGT	1 cut(s)	174
Sfr274I	CTCGAG	1 cut(s)	126
SinI	GGWCC	3 cut(s)	16, 172, 178
SlaI	CTCGAG	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	126
SmoI	CTYRAG	1 cut(s)	126
Sse9I	AATT	2 cut(s)	64, 149
SspMI	CTAG	1 cut(s)	74
SstI	GAGCTC	1 cut(s)	133
StyD4I	CCNGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	2 cut(s)	68, 127
TasI	AATT	2 cut(s)	64, 149
Tru1I	TTAA	1 cut(s)	190
Tru9I	TTAA	1 cut(s)	190
TscAI	CASTG	1 cut(s)	174
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	1 cut(s)	174
Tth111I	GACNNNGTC	1 cut(s)	176
VpaK11BI	GGWCC	3 cut(s)	16, 172, 178
XapI	RAATTY	1 cut(s)	149
XhoI	CTCGAG	1 cut(s)	126
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.