Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006059

Physical Location & Seq

Genomic Coordinates Reverse (-)

58022930 .. 58027588

Gene Structure 4659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG380800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGCGGACCAACCGGACCAGTCCTCTGCTGTTCTTCAACAGATCCTAACCTCACTCTCCCAATCCGCTGATCAACCACAAAGCTCGGTCTCGGAGCTCATCGACTTCCTCAATTCAACCTCCGCTCAATCAGTCCCGGACAACGAAGATTCAGAAGCCACCGCCTTCCGAACCCTCACGCAAGTTCACCAATTCATCTCTTCTCAGTCACACCAGGCGATCTTTGATCAGCTCTTGTTTGAGTTGCCGAAGGCCGTTTCGGAGTTGGGAGGTGTTTCGGAGAGGTGCCTGGAGGTGTTTGAGAGCATTATCGGTCGGTTTGTATCAATGTGTGGTGCCAGAGACATGCTTTCAGTTCTTGGCGAAGCATTGGCTTACCTAACTATGAAAGGCGGGGATTATGGCTATGTTGTGCCTCTTTTCTCGGTGTTTTCTAAAGTATTTCCTTGCCTTAAGAGGCGTCACTTTGAGCAAGTAAAAGAAGCTACTGGAATTATCCTCAAAGTTTTGAAGACCGTGTCTTTGGAGTTGGAAGATGAAGCAGAATTACAAAAAATGTTTGATAGAGCCGTGGGCATTGCTAATTCCATACATGCAGTTTGCTTGAAGTTGGAAGGAGGAGTATATGAAGAGCTTTGTGCTCTTCTTGGTCTTTATGTCTTAGAAATTATGGCTCTTGTCAGCATGAATTTCGAAGTTTTAAGTTCGCAGCCCTTTGTGCTGCAACTGTCTCGTTTCTTCCCGTTTTGTGGTTTGTCATATCTCGGCTTAATTACTGGGTCTAATGTTGACAAAATAAGTAGGATTGTAATACGAGACGATGAAGATTTACATGTTGATTGTTTCTCCGACGTCAAATGTGGTGCATCTGTTTCAGTGATTTGGGGCCATGCTTCTAATGAGGTTGCTACGGCTGCTGATGAGGATTTGACTGCTGTCAAGGTTGAACTTCAGAATAATCAGACTAAAAGGTGGCAAGCTTTTGGCATGCTCAAGCACATTCTAGCTTCTGTCAATCTGCCATGGGAACTTAAAAAACTTGCAATTGATTTTCTGCTTAGCATCAGAGGTGGAAATATTTCCCCTTGTGACCAACATAGTGACTTCTCATCTGACATGGCGGGCCTTTTTGCTCTTCTGCAGGTTGTCTCTTGCCTTCATTATATATTTATCTTCTTCTTTTTTATCAAAGAGGAAGAGAGTCTAATTTGTTTTATCTCCTTATGCTACATTTTAGGCTGTTCAAATGGTCATCATGTATACATCAGACACAGAGCTGAGGAAGAATGCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinetochor_Ybp2

Protein Analysis

431

Amino Acids

47.86

Weight (kDa)

4.86

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030
fragaria_vesca	FvH4_2g28280 FvH4_2g28280 FvH4_2g28280 FvH4_2g28280
malus_domestica	MD15G1131200.v1.1
prunus_persica	Prupe.1G486500_v2.0.a1 Prupe.1G486500_v2.0.a1
pyrus_communis	pycom08g13330 pycom15g11830
rosa_chinensis	RchiOBHm_Chr6g0297191
rosa_laevigata	RLG00000011623
rosa_roxburghii	Rroxscaffold_7G00170800
rosa_rugosa	Rorug06G0269700
rosa_samantha	Rh6AG380800 Rh6BG388900 Rh6CG394200 Rh6DG380800
rosa_wichuraiana	Rw6G033160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	855
Acc36I	ACCTGC	1 cut(s)	1132
AccB1I	GGYRCC	2 cut(s)	285, 335
AccBSI	CCGCTC	1 cut(s)	125
AccI	GTMKAC	1 cut(s)	1260
AciI	CCGC	6 cut(s)	5, 66, 123, 162, 393, 1121
AclWI	GGATC	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	688
AcuI	CTGAAG	1 cut(s)	935
AcyI	GRCGYC	2 cut(s)	460, 852
AfiI	CCNNNNNNNGG	1 cut(s)	749
AflII	CTTAAG	1 cut(s)	452
AflIII	ACRYGT	1 cut(s)	832
AgsI	TTSAA	6 cut(s)	38, 117, 511, 607, 947, 1245
AjnI	CCWGG	2 cut(s)	213, 288
AluBI	AGCT	8 cut(s)	84, 97, 232, 485, 634, 980, 1007, 1277
AluI	AGCT	8 cut(s)	84, 97, 232, 485, 634, 980, 1007, 1277
Alw21I	GWGCWC	2 cut(s)	99, 643
Alw26I	GTCTC	5 cut(s)	94, 336, 735, 810, 1153
AlwI	GGATC	1 cut(s)	37
AoxI	GGCC	3 cut(s)	252, 886, 1123
ApeKI	GCWGC	3 cut(s)	709, 721, 914
ApoI	RAATTY	1 cut(s)	688
ArsI	GACNNNNNNTTYG	2 cut(s)	505, 537
Asp700I	GAANNNNTTC	1 cut(s)	1078
AspS9I	GGNCC	4 cut(s)	7, 16, 886, 1123
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	179
AsuII	TTCGAA	1 cut(s)	693
AvaII	GGWCC	2 cut(s)	7, 16
BanI	GGYRCC	2 cut(s)	285, 335
BanII	GRGCYC	1 cut(s)	99
BarI	GAAGNNNNNNTAC	2 cut(s)	531, 563
BbsI	GAAGAC	1 cut(s)	518
Bbv12I	GWGCWC	2 cut(s)	99, 643
BbvCI	CCTCAGC	1 cut(s)	1278
BbvI	GCAGC	3 cut(s)	708, 721, 901
BceAI	ACGGC	3 cut(s)	239, 554, 927
BcgI	CGANNNNNNTGC	4 cut(s)	673, 707, 713, 747
BciT130I	CCWGG	2 cut(s)	215, 290
BclI	TGATCA	2 cut(s)	70, 226
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	5 cut(s)	94, 336, 735, 810, 1153
BfaI	CTAG	1 cut(s)	1004
BfmI	CTRYAG	1 cut(s)	1139
BfrI	CTTAAG	1 cut(s)	452
BfuAI	ACCTGC	1 cut(s)	1132
BisI	GCNGC	3 cut(s)	710, 722, 915
BlpI	GCTNAGC	1 cut(s)	1058
BlsI	GCNGC	3 cut(s)	711, 723, 916
Bme1390I	CCNGG	3 cut(s)	137, 215, 290
Bme18I	GGWCC	2 cut(s)	7, 16
BmgT120I	GGNCC	4 cut(s)	7, 16, 886, 1123
BmiI	GGNNCC	3 cut(s)	287, 337, 887
BmrFI	CCNGG	3 cut(s)	137, 215, 290
BmrI	ACTGGG	1 cut(s)	786
BmsI	GCATC	2 cut(s)	875, 1071
BmuI	ACTGGG	1 cut(s)	786
BoxI	GACNNNNGTC	1 cut(s)	935
BpiI	GAAGAC	1 cut(s)	518
BpmI	CTGGAG	1 cut(s)	311
Bpu10I	CCTNAGC	1 cut(s)	1278
Bpu1102I	GCTNAGC	1 cut(s)	1058
Bpu14I	TTCGAA	1 cut(s)	693
BpuEI	CTTGAG	1 cut(s)	977
BpuMI	CCSGG	1 cut(s)	137
BsaHI	GRCGYC	2 cut(s)	460, 852
BsaI	GGTCTC	1 cut(s)	94
BsaJI	CCNNGG	2 cut(s)	570, 1022
BsaWI	WCCGGW	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	1 cut(s)	749
Bse1I	ACTGG	3 cut(s)	19, 493, 781
Bse3DI	GCAATG	1 cut(s)	576
BseBI	CCWGG	2 cut(s)	215, 290
BseDI	CCNNGG	2 cut(s)	570, 1022
BseLI	CCNNNNNNNGG	1 cut(s)	749
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	2 cut(s)	218, 1269
BseNI	ACTGG	3 cut(s)	19, 493, 781
BseRI	GAGGAG	1 cut(s)	633
BseXI	GCAGC	3 cut(s)	708, 721, 901
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	3 cut(s)	254, 888, 1125
BshNI	GGYRCC	2 cut(s)	285, 335
BsiEI	CGRYCG	1 cut(s)	316
BsiHKAI	GWGCWC	2 cut(s)	99, 643
BsiSI	CCGG	2 cut(s)	14, 137
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	749
BsmAI	GTCTC	5 cut(s)	94, 336, 735, 810, 1153
BsmBI	CGTCTC	1 cut(s)	810
BsmFI	GGGAC	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	1292
BsnI	GGCC	3 cut(s)	254, 888, 1125
Bso31I	GGTCTC	1 cut(s)	94
Bsp119I	TTCGAA	1 cut(s)	693
Bsp1286I	GDGCHC	2 cut(s)	99, 643
Bsp143I	GATC	4 cut(s)	42, 70, 219, 226
Bsp1720I	GCTNAGC	1 cut(s)	1058
Bsp19I	CCATGG	1 cut(s)	1022
BspACI	CCGC	6 cut(s)	5, 66, 123, 162, 393, 1121
BspANI	GGCC	3 cut(s)	254, 888, 1125
BspCNI	CTCAG	2 cut(s)	217, 1270
BspLI	GGNNCC	3 cut(s)	287, 337, 887
BspMAI	CTGCAG	1 cut(s)	1143
BspMI	ACCTGC	1 cut(s)	1132
BspPI	GGATC	1 cut(s)	37
BspQI	GCTCTTC	3 cut(s)	624, 648, 1140
BspT104I	TTCGAA	1 cut(s)	693
BspT107I	GGYRCC	2 cut(s)	285, 335
BspTI	CTTAAG	1 cut(s)	452
BspTNI	GGTCTC	1 cut(s)	94
BsrBI	CCGCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	576
BsrI	ACTGG	3 cut(s)	19, 493, 781
BssECI	CCNNGG	2 cut(s)	570, 1022
BssMI	GATC	4 cut(s)	42, 70, 219, 226
BssNAI	GTATAC	1 cut(s)	1261
BssNI	GRCGYC	2 cut(s)	460, 852
BssT1I	CCWWGG	1 cut(s)	1022
Bst1107I	GTATAC	1 cut(s)	1261
Bst2UI	CCWGG	2 cut(s)	215, 290
Bst4CI	ACNGT	2 cut(s)	517, 729
Bst6I	CTCTTC	5 cut(s)	205, 624, 648, 1140, 1191
BstACI	GRCGYC	2 cut(s)	460, 852
BstAFI	CTTAAG	1 cut(s)	452
BstBI	TTCGAA	1 cut(s)	693
BstC8I	GCNNGC	3 cut(s)	978, 989, 1123
BstDEI	CTNAG	4 cut(s)	204, 661, 1058, 1278
BstDSI	CCRYGG	2 cut(s)	570, 1022
BstKTI	GATC	4 cut(s)	45, 73, 222, 229
BstMAI	GTCTC	5 cut(s)	94, 336, 735, 810, 1153
BstMBI	GATC	4 cut(s)	42, 70, 219, 226
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	2 cut(s)	718, 914
BstNI	CCWGG	2 cut(s)	215, 290
BstNSI	RCATGY	4 cut(s)	349, 596, 836, 991
BstPAI	GACNNNNGTC	1 cut(s)	935
BstSCI	CCNGG	3 cut(s)	135, 213, 288
BstSFI	CTRYAG	1 cut(s)	1139
BstV1I	GCAGC	3 cut(s)	708, 721, 901
BstV2I	GAAGAC	1 cut(s)	518
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BstZ17I	GTATAC	1 cut(s)	1261
BsuRI	GGCC	3 cut(s)	254, 888, 1125
BtgI	CCRYGG	2 cut(s)	570, 1022
BtsIMutI	CAGTG	1 cut(s)	882
BveI	ACCTGC	1 cut(s)	1132
Cac8I	GCNNGC	3 cut(s)	978, 989, 1123
Cfr13I	GGNCC	4 cut(s)	7, 16, 886, 1123
CseI	GACGC	1 cut(s)	449
CviAII	CATG	9 cut(s)	346, 593, 685, 833, 890, 988, 1023, 1117, 1256
DdeI	CTNAG	4 cut(s)	204, 661, 1058, 1278
DpnI	GATC	4 cut(s)	44, 72, 221, 228
DpnII	GATC	4 cut(s)	42, 70, 219, 226
Eam1104I	CTCTTC	5 cut(s)	205, 624, 648, 1140, 1191
EarI	CTCTTC	5 cut(s)	205, 624, 648, 1140, 1191
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	1022
Eco24I	GRGCYC	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	7, 16
Eco53kI	GAGCTC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	935
EcoICRI	GAGCTC	1 cut(s)	97
EcoRII	CCWGG	2 cut(s)	213, 288
EcoT14I	CCWWGG	1 cut(s)	1022
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	1022
Esp3I	CGTCTC	1 cut(s)	810
FaeI	CATG	9 cut(s)	349, 596, 688, 836, 893, 991, 1026, 1120, 1259
FalI	AAGNNNNNCTT	1 cut(s)	1275
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	9 cut(s)	345, 592, 684, 832, 889, 987, 1022, 1116, 1255
FauI	CCCGC	2 cut(s)	386, 1114
FbaI	TGATCA	2 cut(s)	70, 226
FblI	GTMKAC	1 cut(s)	1260
Fnu4HI	GCNGC	3 cut(s)	710, 722, 915
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	3 cut(s)	710, 722, 915
FspBI	CTAG	1 cut(s)	1004
GluI	GCNGC	3 cut(s)	710, 722, 915
GsuI	CTGGAG	1 cut(s)	311
HaeIII	GGCC	3 cut(s)	254, 888, 1125
HapII	CCGG	2 cut(s)	14, 137
HgaI	GACGC	1 cut(s)	449
Hin1I	GRCGYC	2 cut(s)	460, 852
Hin1II	CATG	9 cut(s)	349, 596, 688, 836, 893, 991, 1026, 1120, 1259
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HindIII	AAGCTT	1 cut(s)	978
HinfI	GANTC	2 cut(s)	149, 1201
HpaII	CCGG	2 cut(s)	14, 137
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	3 cut(s)	187, 790, 1261
Hpy8I	GTNNAC	3 cut(s)	187, 790, 1261
Hpy99I	CGWCG	1 cut(s)	854
HpyAV	CCTTC	4 cut(s)	175, 244, 608, 1166
HpyCH4III	ACNGT	2 cut(s)	517, 729
HpyCH4IV	ACGT	1 cut(s)	852
HpyCH4V	TGCA	5 cut(s)	596, 724, 866, 1043, 1141
HpyF10VI	GCNNNNNNNGC	2 cut(s)	718, 914
HpyF3I	CTNAG	4 cut(s)	204, 661, 1058, 1278
HpySE526I	ACGT	1 cut(s)	852
Hsp92I	GRCGYC	2 cut(s)	460, 852
Hsp92II	CATG	9 cut(s)	349, 596, 688, 836, 893, 991, 1026, 1120, 1259
Ksp22I	TGATCA	2 cut(s)	70, 226
Kzo9I	GATC	4 cut(s)	42, 70, 219, 226
LguI	GCTCTTC	3 cut(s)	624, 648, 1140
LmnI	GCTCC	1 cut(s)	94
Lsp1109I	GCAGC	3 cut(s)	708, 721, 901
LweI	GCATC	2 cut(s)	875, 1071
MaeI	CTAG	1 cut(s)	1004
MaeII	ACGT	1 cut(s)	852
MaeIII	GTNAC	4 cut(s)	207, 461, 1088, 1100
MalI	GATC	4 cut(s)	44, 72, 221, 228
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	4 cut(s)	42, 70, 219, 226
MfeI	CAATTG	1 cut(s)	1044
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	2 cut(s)	99, 643
MlyI	GAGTC	1 cut(s)	1210
MmeI	TCCRAC	3 cut(s)	510, 591, 873
MroXI	GAANNNNTTC	1 cut(s)	1078
MseI	TTAA	4 cut(s)	453, 701, 770, 1032
MspA1I	CMGCKG	1 cut(s)	68
MspCI	CTTAAG	1 cut(s)	452
MspI	CCGG	2 cut(s)	14, 137
MspR9I	CCNGG	3 cut(s)	137, 215, 290
MunI	CAATTG	1 cut(s)	1044
Mva1269I	GAATGC	1 cut(s)	1292
MvaI	CCWGG	2 cut(s)	215, 290
MwoI	GCNNNNNNNGC	2 cut(s)	718, 914
NciI	CCSGG	1 cut(s)	137
NcoI	CCATGG	1 cut(s)	1022
NdeII	GATC	4 cut(s)	42, 70, 219, 226
NlaIII	CATG	9 cut(s)	349, 596, 688, 836, 893, 991, 1026, 1120, 1259
NlaIV	GGNNCC	3 cut(s)	287, 337, 887
NmeAIII	GCCGAG	1 cut(s)	744
NmuCI	GTSAC	4 cut(s)	207, 461, 1088, 1100
NspI	RCATGY	4 cut(s)	349, 596, 836, 991
NspV	TTCGAA	1 cut(s)	693
PaeI	GCATGC	1 cut(s)	991
PciI	ACATGT	1 cut(s)	832
PciSI	GCTCTTC	3 cut(s)	624, 648, 1140
PctI	GAATGC	1 cut(s)	1292
PdmI	GAANNNNTTC	1 cut(s)	1078
PfeI	GAWTC	1 cut(s)	149
PflFI	GACNNNGTC	1 cut(s)	517
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	3 cut(s)	711, 723, 916
PleI	GAGTC	1 cut(s)	1209
PpsI	GAGTC	1 cut(s)	1209
PscI	ACATGT	1 cut(s)	832
PshAI	GACNNNNGTC	1 cut(s)	935
Psp124BI	GAGCTC	1 cut(s)	99
Psp6I	CCWGG	2 cut(s)	213, 288
PspGI	CCWGG	2 cut(s)	213, 288
PspN4I	GGNNCC	3 cut(s)	287, 337, 887
PspPI	GGNCC	4 cut(s)	7, 16, 886, 1123
PstI	CTGCAG	1 cut(s)	1143
PsuI	RGATCY	1 cut(s)	42
PsyI	GACNNNGTC	1 cut(s)	517
SacI	GAGCTC	1 cut(s)	99
SapI	GCTCTTC	3 cut(s)	624, 648, 1140
SaqAI	TTAA	4 cut(s)	453, 701, 770, 1032
SatI	GCNGC	3 cut(s)	710, 722, 915
Sau3AI	GATC	4 cut(s)	42, 70, 219, 226
Sau96I	GGNCC	4 cut(s)	7, 16, 886, 1123
SchI	GAGTC	1 cut(s)	1210
ScrFI	CCNGG	3 cut(s)	137, 215, 290
SduI	GDGCHC	2 cut(s)	99, 643
SfaNI	GCATC	2 cut(s)	875, 1071
SfcI	CTRYAG	1 cut(s)	1139
SfuI	TTCGAA	1 cut(s)	693
SinI	GGWCC	2 cut(s)	7, 16
SmlI	CTYRAG	2 cut(s)	452, 992
SmoI	CTYRAG	2 cut(s)	452, 992
SphI	GCATGC	1 cut(s)	991
SsiI	CCGC	6 cut(s)	5, 66, 123, 162, 393, 1121
SspI	AATATT	1 cut(s)	1078
SspMI	CTAG	1 cut(s)	1004
SstI	GAGCTC	1 cut(s)	99
StyD4I	CCNGG	3 cut(s)	135, 213, 288
StyI	CCWWGG	1 cut(s)	1022
TaaI	ACNGT	2 cut(s)	517, 729
TaiI	ACGT	1 cut(s)	855
TaqI	TCGA	2 cut(s)	102, 693
TaqII	GACCGA	2 cut(s)	76, 302
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	4 cut(s)	453, 701, 770, 1032
Tru9I	TTAA	4 cut(s)	453, 701, 770, 1032
TscAI	CASTG	1 cut(s)	882
TseFI	GTSAC	4 cut(s)	207, 461, 1088, 1100
TseI	GCWGC	3 cut(s)	709, 721, 914
Tsp45I	GTSAC	4 cut(s)	207, 461, 1088, 1100
TspDTI	ATGAA	7 cut(s)	184, 401, 552, 642, 701, 837, 1148
TspRI	CASTG	1 cut(s)	882
Tth111I	GACNNNGTC	1 cut(s)	517
Vha464I	CTTAAG	1 cut(s)	452
VpaK11BI	GGWCC	2 cut(s)	7, 16
XapI	RAATTY	1 cut(s)	688
XceI	RCATGY	4 cut(s)	349, 596, 836, 991
XmiI	GTMKAC	1 cut(s)	1260
XmnI	GAANNNNTTC	1 cut(s)	1078
XspI	CTAG	1 cut(s)	1004
ZraI	GACGTC	1 cut(s)	853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.