Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006059

Physical Location & Seq

Genomic Coordinates Reverse (-)

57505788 .. 57510294

Gene Structure 4507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG380800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGCGGACCAGTCCTCTGCTGTTCTTCAACAGATCCTAACCTCACTCTCCCAATCAGCTGATCAACCACAAAGCTCGGTCTCGGAGCTCATCGACTTCCTCAATTCAACCTCCGCTCAATCAGTCCCGGACAACGAAGATTCAGAAGCCACCGCCTTCCGAACCCTCACGCAAGTTCACCAATTCATCTCTTCTCAGTCAGACCAGGCCATCTTTGATCAGCTCTTGTTTGAGTTGCCCAAGGCCGTTTCGGAGTTGGGAGGTGTTTCGGAGAGGTGCCTGGAGGTGTTCGAGAGCATTATCGATCGGTTTGCATCAATGTGTGGTGCCAGAGACATGCTTTCAGTTCTTGGCGAAGCATTGGCTTACCTAACTATGAAAGGCGGGGATTATGGCTATGTTGTGCCTCTTTTCTCGGTGTTTTCTAAAGTATTTCCTTGCCTTAAGAGGCGTCACTTTGAGCAAGTAAAAGAAGCTACTGGAATTATCCTCAAAGTTTTGAAGACCGTGTCTTTGGAGTTGGAAGATGAAGCAGAATTACAAAAAATGTTTGATAGAGCCGTGGGCATTGCTAATTCCATACATGCAGTTTGCTTGAAGTTGGAAGGAGGAGTATATGAAAAGCTTTGTGCTCTTCTTGGTCTTTATGTCTTAGAAATTATGGCTCTTGTCAGCATGAATTTCGAAGTTTTAAGTTCGCAGCCCTTTGTGCTGCAACTGTCTAGTTTCTTCCCGTTTTGTGGTTTGTCATATCTCGGCTTAATTACTGGGTCTAATGTTGACAAAATAAGTAGGATTGTAATAGGAGACGATGACGATTTACATGTTGATTGTTTCTCCGACGTCAAATGTGGTGCATCTGTTTCAGTGATTTGGGGCCATGCTTCTAATGAGGTTGCTACGGCTGCTGATGAGGATTTGACTGCTGTCAAGGTTGAACTTCAGAATAATCAGACTAAAAGGTGGCAAGCTTTTGGCATGCTAAAGCACATTCTAGCTTCTGTCAATCTGCCATGGGAACTTAAAAAACATGCAATTGATTTTCTGCTTAGCATCAGAGGTGGAAGTATTTCCCCTTGTGACAAACATAGTGACTTCTCATCTGACATGGCGGGCCTTTTTGCTCTTCTGCAGGTTGTCTCTTGCCATCATTATATATTCATCTTCTTCTTTTTTATCAAAGAGGAAGAGAGTCTAATTTGTTTTATCTCCTTATGCTACATTTTAGGCTGTTCAAATGGTCATCATGTATACATCAGACACAGAGCTGAGGAAGAATGCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinetochor_Ybp2

Protein Analysis

428

Amino Acids

47.37

Weight (kDa)

4.89

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030
fragaria_vesca	FvH4_2g28280 FvH4_2g28280 FvH4_2g28280 FvH4_2g28280
malus_domestica	MD15G1131200.v1.1
prunus_persica	Prupe.1G486500_v2.0.a1 Prupe.1G486500_v2.0.a1
pyrus_communis	pycom08g13330 pycom15g11830
rosa_chinensis	RchiOBHm_Chr6g0297191
rosa_laevigata	RLG00000011623
rosa_roxburghii	Rroxscaffold_7G00170800
rosa_rugosa	Rorug06G0269700
rosa_samantha	Rh6AG380800 Rh6BG388900 Rh6CG394200 Rh6DG380800
rosa_wichuraiana	Rw6G033160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	846
Acc36I	ACCTGC	1 cut(s)	1123
AccB1I	GGYRCC	2 cut(s)	276, 326
AccBSI	CCGCTC	1 cut(s)	116
AccI	GTMKAC	1 cut(s)	1251
AciI	CCGC	5 cut(s)	5, 114, 153, 384, 1112
AclWI	GGATC	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	679
AcuI	CTGAAG	1 cut(s)	926
AcyI	GRCGYC	2 cut(s)	451, 843
AfiI	CCNNNNNNNGG	1 cut(s)	740
AflII	CTTAAG	1 cut(s)	443
AflIII	ACRYGT	1 cut(s)	823
AgsI	TTSAA	6 cut(s)	29, 108, 502, 598, 938, 1236
AjnI	CCWGG	2 cut(s)	204, 279
AluBI	AGCT	9 cut(s)	59, 75, 88, 223, 476, 625, 971, 998, 1268
AluI	AGCT	9 cut(s)	59, 75, 88, 223, 476, 625, 971, 998, 1268
Alw21I	GWGCWC	2 cut(s)	90, 634
Alw26I	GTCTC	4 cut(s)	85, 327, 801, 1144
AlwI	GGATC	1 cut(s)	28
AoxI	GGCC	4 cut(s)	207, 243, 877, 1114
ApeKI	GCWGC	3 cut(s)	700, 712, 905
ApoI	RAATTY	1 cut(s)	679
ArsI	GACNNNNNNTTYG	2 cut(s)	496, 528
Asp700I	GAANNNNTTC	1 cut(s)	1069
AspS9I	GGNCC	3 cut(s)	7, 877, 1114
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	170
AsuII	TTCGAA	1 cut(s)	684
AvaII	GGWCC	1 cut(s)	7
BanI	GGYRCC	2 cut(s)	276, 326
BanII	GRGCYC	1 cut(s)	90
BarI	GAAGNNNNNNTAC	2 cut(s)	522, 554
BbsI	GAAGAC	1 cut(s)	509
Bbv12I	GWGCWC	2 cut(s)	90, 634
BbvCI	CCTCAGC	1 cut(s)	1269
BbvI	GCAGC	3 cut(s)	699, 712, 892
BccI	CCATC	2 cut(s)	218, 1155
BceAI	ACGGC	3 cut(s)	230, 545, 918
BcgI	CGANNNNNNTGC	4 cut(s)	293, 327, 664, 698
BciT130I	CCWGG	2 cut(s)	206, 281
BclI	TGATCA	2 cut(s)	61, 217
BcnI	CCSGG	1 cut(s)	128
BcoDI	GTCTC	4 cut(s)	85, 327, 801, 1144
BfaI	CTAG	2 cut(s)	723, 995
BfmI	CTRYAG	1 cut(s)	1130
BfrI	CTTAAG	1 cut(s)	443
BfuAI	ACCTGC	1 cut(s)	1123
BisI	GCNGC	3 cut(s)	701, 713, 906
BlpI	GCTNAGC	1 cut(s)	1049
BlsI	GCNGC	3 cut(s)	702, 714, 907
Bme1390I	CCNGG	3 cut(s)	128, 206, 281
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	3 cut(s)	7, 877, 1114
BmiI	GGNNCC	3 cut(s)	278, 328, 878
BmrFI	CCNGG	3 cut(s)	128, 206, 281
BmrI	ACTGGG	1 cut(s)	777
BmsI	GCATC	3 cut(s)	323, 866, 1062
BmuI	ACTGGG	1 cut(s)	777
BoxI	GACNNNNGTC	1 cut(s)	926
BpiI	GAAGAC	1 cut(s)	509
BpmI	CTGGAG	1 cut(s)	302
Bpu10I	CCTNAGC	1 cut(s)	1269
Bpu1102I	GCTNAGC	1 cut(s)	1049
Bpu14I	TTCGAA	1 cut(s)	684
BpuMI	CCSGG	1 cut(s)	128
Bsa29I	ATCGAT	1 cut(s)	303
BsaHI	GRCGYC	2 cut(s)	451, 843
BsaI	GGTCTC	1 cut(s)	85
BsaJI	CCNNGG	3 cut(s)	240, 561, 1013
Bsc4I	CCNNNNNNNGG	1 cut(s)	740
Bse1I	ACTGG	3 cut(s)	10, 484, 772
Bse3DI	GCAATG	1 cut(s)	567
BseBI	CCWGG	2 cut(s)	206, 281
BseCI	ATCGAT	1 cut(s)	303
BseDI	CCNNGG	3 cut(s)	240, 561, 1013
BseLI	CCNNNNNNNGG	1 cut(s)	740
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	2 cut(s)	209, 1260
BseNI	ACTGG	3 cut(s)	10, 484, 772
BseRI	GAGGAG	1 cut(s)	624
BseXI	GCAGC	3 cut(s)	699, 712, 892
Bsh1285I	CGRYCG	1 cut(s)	307
BshFI	GGCC	4 cut(s)	209, 245, 879, 1116
BshNI	GGYRCC	2 cut(s)	276, 326
BshVI	ATCGAT	1 cut(s)	303
BsiEI	CGRYCG	1 cut(s)	307
BsiHKAI	GWGCWC	2 cut(s)	90, 634
BsiSI	CCGG	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	740
BsmAI	GTCTC	4 cut(s)	85, 327, 801, 1144
BsmBI	CGTCTC	1 cut(s)	801
BsmFI	GGGAC	1 cut(s)	110
BsmI	GAATGC	1 cut(s)	1283
BsnI	GGCC	4 cut(s)	209, 245, 879, 1116
Bso31I	GGTCTC	1 cut(s)	85
Bsp119I	TTCGAA	1 cut(s)	684
Bsp1286I	GDGCHC	2 cut(s)	90, 634
Bsp143I	GATC	4 cut(s)	33, 61, 217, 304
Bsp1720I	GCTNAGC	1 cut(s)	1049
Bsp19I	CCATGG	1 cut(s)	1013
BspACI	CCGC	5 cut(s)	5, 114, 153, 384, 1112
BspANI	GGCC	4 cut(s)	209, 245, 879, 1116
BspCNI	CTCAG	2 cut(s)	208, 1261
BspDI	ATCGAT	1 cut(s)	303
BspLI	GGNNCC	3 cut(s)	278, 328, 878
BspMAI	CTGCAG	1 cut(s)	1134
BspMI	ACCTGC	1 cut(s)	1123
BspPI	GGATC	1 cut(s)	28
BspQI	GCTCTTC	2 cut(s)	639, 1131
BspT104I	TTCGAA	1 cut(s)	684
BspT107I	GGYRCC	2 cut(s)	276, 326
BspTI	CTTAAG	1 cut(s)	443
BspTNI	GGTCTC	1 cut(s)	85
BsrBI	CCGCTC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	567
BsrI	ACTGG	3 cut(s)	10, 484, 772
BssECI	CCNNGG	3 cut(s)	240, 561, 1013
BssMI	GATC	4 cut(s)	33, 61, 217, 304
BssNAI	GTATAC	1 cut(s)	1252
BssNI	GRCGYC	2 cut(s)	451, 843
BssT1I	CCWWGG	2 cut(s)	240, 1013
Bst1107I	GTATAC	1 cut(s)	1252
Bst2UI	CCWGG	2 cut(s)	206, 281
Bst4CI	ACNGT	2 cut(s)	508, 720
Bst6I	CTCTTC	4 cut(s)	196, 639, 1131, 1182
BstACI	GRCGYC	2 cut(s)	451, 843
BstAFI	CTTAAG	1 cut(s)	443
BstBI	TTCGAA	1 cut(s)	684
BstC8I	GCNNGC	3 cut(s)	969, 980, 1114
BstDEI	CTNAG	4 cut(s)	195, 652, 1049, 1269
BstDSI	CCRYGG	2 cut(s)	561, 1013
BstKTI	GATC	4 cut(s)	36, 64, 220, 307
BstMAI	GTCTC	4 cut(s)	85, 327, 801, 1144
BstMBI	GATC	4 cut(s)	33, 61, 217, 304
BstMCI	CGRYCG	1 cut(s)	307
BstMWI	GCNNNNNNNGC	2 cut(s)	709, 905
BstNI	CCWGG	2 cut(s)	206, 281
BstNSI	RCATGY	5 cut(s)	340, 587, 827, 982, 1034
BstPAI	GACNNNNGTC	1 cut(s)	926
BstSCI	CCNGG	3 cut(s)	126, 204, 279
BstSFI	CTRYAG	1 cut(s)	1130
BstV1I	GCAGC	3 cut(s)	699, 712, 892
BstV2I	GAAGAC	1 cut(s)	509
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
BstZ17I	GTATAC	1 cut(s)	1252
Bsu15I	ATCGAT	1 cut(s)	303
BsuRI	GGCC	4 cut(s)	209, 245, 879, 1116
BsuTUI	ATCGAT	1 cut(s)	303
BtgI	CCRYGG	2 cut(s)	561, 1013
BtsIMutI	CAGTG	1 cut(s)	873
BveI	ACCTGC	1 cut(s)	1123
Cac8I	GCNNGC	3 cut(s)	969, 980, 1114
Cfr13I	GGNCC	3 cut(s)	7, 877, 1114
ClaI	ATCGAT	1 cut(s)	303
CseI	GACGC	1 cut(s)	440
DdeI	CTNAG	4 cut(s)	195, 652, 1049, 1269
DpnI	GATC	4 cut(s)	35, 63, 219, 306
DpnII	GATC	4 cut(s)	33, 61, 217, 304
Eam1104I	CTCTTC	4 cut(s)	196, 639, 1131, 1182
EarI	CTCTTC	4 cut(s)	196, 639, 1131, 1182
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	88
Eco130I	CCWWGG	2 cut(s)	240, 1013
Eco24I	GRGCYC	1 cut(s)	90
Eco31I	GGTCTC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	7
Eco53kI	GAGCTC	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	926
EcoICRI	GAGCTC	1 cut(s)	88
EcoRII	CCWGG	2 cut(s)	204, 279
EcoT14I	CCWWGG	2 cut(s)	240, 1013
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	2 cut(s)	240, 1013
Esp3I	CGTCTC	1 cut(s)	801
FalI	AAGNNNNNCTT	1 cut(s)	1266
FaqI	GGGAC	1 cut(s)	110
FauI	CCCGC	2 cut(s)	377, 1105
FbaI	TGATCA	2 cut(s)	61, 217
FblI	GTMKAC	1 cut(s)	1251
Fnu4HI	GCNGC	3 cut(s)	701, 713, 906
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	3 cut(s)	701, 713, 906
FspBI	CTAG	2 cut(s)	723, 995
GluI	GCNGC	3 cut(s)	701, 713, 906
GsuI	CTGGAG	1 cut(s)	302
HaeIII	GGCC	4 cut(s)	209, 245, 879, 1116
HapII	CCGG	1 cut(s)	128
HgaI	GACGC	1 cut(s)	440
Hin1I	GRCGYC	2 cut(s)	451, 843
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HindIII	AAGCTT	2 cut(s)	623, 969
HinfI	GANTC	2 cut(s)	140, 1192
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	3 cut(s)	178, 781, 1252
Hpy188III	TCNNGA	1 cut(s)	292
Hpy8I	GTNNAC	3 cut(s)	178, 781, 1252
Hpy99I	CGWCG	1 cut(s)	845
HpyAV	CCTTC	2 cut(s)	166, 599
HpyCH4III	ACNGT	2 cut(s)	508, 720
HpyCH4IV	ACGT	1 cut(s)	843
HpyCH4V	TGCA	6 cut(s)	314, 587, 715, 857, 1034, 1132
HpyF10VI	GCNNNNNNNGC	2 cut(s)	709, 905
HpyF3I	CTNAG	4 cut(s)	195, 652, 1049, 1269
HpySE526I	ACGT	1 cut(s)	843
Hsp92I	GRCGYC	2 cut(s)	451, 843
Ksp22I	TGATCA	2 cut(s)	61, 217
Kzo9I	GATC	4 cut(s)	33, 61, 217, 304
LguI	GCTCTTC	2 cut(s)	639, 1131
LmnI	GCTCC	1 cut(s)	85
Lsp1109I	GCAGC	3 cut(s)	699, 712, 892
LweI	GCATC	3 cut(s)	323, 866, 1062
MaeI	CTAG	2 cut(s)	723, 995
MaeII	ACGT	1 cut(s)	843
MaeIII	GTNAC	3 cut(s)	452, 1079, 1091
MalI	GATC	4 cut(s)	35, 63, 219, 306
MbiI	CCGCTC	1 cut(s)	116
MboI	GATC	4 cut(s)	33, 61, 217, 304
MfeI	CAATTG	1 cut(s)	1035
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	2 cut(s)	90, 634
MlyI	GAGTC	1 cut(s)	1201
MmeI	TCCRAC	3 cut(s)	501, 582, 864
MroXI	GAANNNNTTC	1 cut(s)	1069
MseI	TTAA	4 cut(s)	444, 692, 761, 1023
MslI	CAYNNNNRTG	1 cut(s)	319
MspA1I	CMGCKG	1 cut(s)	59
MspCI	CTTAAG	1 cut(s)	443
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	3 cut(s)	128, 206, 281
MunI	CAATTG	1 cut(s)	1035
Mva1269I	GAATGC	1 cut(s)	1283
MvaI	CCWGG	2 cut(s)	206, 281
MwoI	GCNNNNNNNGC	2 cut(s)	709, 905
NciI	CCSGG	1 cut(s)	128
NcoI	CCATGG	1 cut(s)	1013
NdeII	GATC	4 cut(s)	33, 61, 217, 304
NlaIV	GGNNCC	3 cut(s)	278, 328, 878
NmeAIII	GCCGAG	1 cut(s)	735
NmuCI	GTSAC	3 cut(s)	452, 1079, 1091
NspI	RCATGY	5 cut(s)	340, 587, 827, 982, 1034
NspV	TTCGAA	1 cut(s)	684
PaeI	GCATGC	1 cut(s)	982
PciI	ACATGT	1 cut(s)	823
PciSI	GCTCTTC	2 cut(s)	639, 1131
PctI	GAATGC	1 cut(s)	1283
PdmI	GAANNNNTTC	1 cut(s)	1069
PfeI	GAWTC	1 cut(s)	140
PflFI	GACNNNGTC	1 cut(s)	508
PfoI	TCCNGGA	1 cut(s)	126
PkrI	GCNGC	3 cut(s)	702, 714, 907
Ple19I	CGATCG	1 cut(s)	307
PleI	GAGTC	1 cut(s)	1200
PpsI	GAGTC	1 cut(s)	1200
PscI	ACATGT	1 cut(s)	823
PshAI	GACNNNNGTC	1 cut(s)	926
Psp124BI	GAGCTC	1 cut(s)	90
Psp6I	CCWGG	2 cut(s)	204, 279
PspGI	CCWGG	2 cut(s)	204, 279
PspN4I	GGNNCC	3 cut(s)	278, 328, 878
PspPI	GGNCC	3 cut(s)	7, 877, 1114
PstI	CTGCAG	1 cut(s)	1134
PsuI	RGATCY	1 cut(s)	33
PsyI	GACNNNGTC	1 cut(s)	508
PvuI	CGATCG	1 cut(s)	307
PvuII	CAGCTG	1 cut(s)	59
RseI	CAYNNNNRTG	1 cut(s)	319
SacI	GAGCTC	1 cut(s)	90
SapI	GCTCTTC	2 cut(s)	639, 1131
SaqAI	TTAA	4 cut(s)	444, 692, 761, 1023
SatI	GCNGC	3 cut(s)	701, 713, 906
Sau3AI	GATC	4 cut(s)	33, 61, 217, 304
Sau96I	GGNCC	3 cut(s)	7, 877, 1114
SchI	GAGTC	1 cut(s)	1201
ScrFI	CCNGG	3 cut(s)	128, 206, 281
SduI	GDGCHC	2 cut(s)	90, 634
SfaNI	GCATC	3 cut(s)	323, 866, 1062
SfcI	CTRYAG	1 cut(s)	1130
SfuI	TTCGAA	1 cut(s)	684
SinI	GGWCC	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	319
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SphI	GCATGC	1 cut(s)	982
SsiI	CCGC	5 cut(s)	5, 114, 153, 384, 1112
SspMI	CTAG	2 cut(s)	723, 995
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	3 cut(s)	126, 204, 279
StyI	CCWWGG	2 cut(s)	240, 1013
TaaI	ACNGT	2 cut(s)	508, 720
TaiI	ACGT	1 cut(s)	846
TaqI	TCGA	4 cut(s)	93, 291, 303, 684
TaqII	GACCGA	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	4 cut(s)	444, 692, 761, 1023
Tru9I	TTAA	4 cut(s)	444, 692, 761, 1023
TscAI	CASTG	1 cut(s)	873
TseFI	GTSAC	3 cut(s)	452, 1079, 1091
TseI	GCWGC	3 cut(s)	700, 712, 905
Tsp45I	GTSAC	3 cut(s)	452, 1079, 1091
TspDTI	ATGAA	6 cut(s)	175, 392, 543, 633, 692, 1150
TspRI	CASTG	1 cut(s)	873
Tth111I	GACNNNGTC	1 cut(s)	508
Vha464I	CTTAAG	1 cut(s)	443
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	1 cut(s)	679
XceI	RCATGY	5 cut(s)	340, 587, 827, 982, 1034
XmiI	GTMKAC	1 cut(s)	1251
XmnI	GAANNNNTTC	1 cut(s)	1069
XspI	CTAG	2 cut(s)	723, 995
ZraI	GACGTC	1 cut(s)	844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.