Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006059

Physical Location & Seq

Genomic Coordinates Forward (+)

41669807 .. 41677926

Gene Structure 8120 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0269700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCGGTAAAGCTTATGCATGCGGTTCAGTACAACAGTTATGGTGGAGGACCCTCTGGTTTAAAGCATGTTGAGATTCCAATCCCAACTCCGAAGAAAGATGAGGTTTTGCTGAAATTAGAAGCAGCTAGTCTGAATCTCGTTGATTGGACAATTCAGACAGGCTTGATGCGGCCTTTATTTTTCCCGCGCCACTTTCCTCATACTCCTGTTAGCGATGTGGCCGGAGAGGTTGTCGAGGTTGGACAAGGAGTTCGAAAGTTCAAAGTGGGCGATAAAGCTGTGGCAATTCTCACCCTCTCTAATGGAGGTGGATTTGCTGAATTTGCAACTGCTAGTGAGAGTTTGACTGTTACTATGCCGCCGGAAGTTTCAGCAGCCGAAGCTGCAGGGTTACCTGTTGCAGGTATCACAGCTCACAAGTGTCTCACTCAAGCTGCAGGAGTCAAGCTGGACGGCACCGGCCCGCAGAAAAACATATTGGTTACTGCTGCCTCTGGAGGTGTAGGGCACTATGCAGTCCAACTAGCAAAGCTCGGGAACCATCATGTCACAGCCACTTGTGGAGCGCGTAACATTGATTTGGTCAAGAGCTTAGGGGCTGACGAGGTTCTTGACTACAAGACCCCTGAAGGGGCAGCTCTAAATAGCCCGTCTGGTCGGAAATATGATGCTGTGATCCACTGTACAACAGGCATTCCTTGGTCCACTTTTAATCCGAATTTGAGTCCAAATGGGAAGGTCATAGACATTACTCCCGGTCCAAAGGCTATGCTTAATTACTTTCACTCTACAGAAACTCACCTGCTCCAAGAAGCAGCTGGTGCCGCTGCTGGTGATTCGCAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinetochor_Ybp2

Protein Analysis

283

Amino Acids

29.42

Weight (kDa)

6.59

Isoelectric Point (pI)

31.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	33 - 121	1.3e-13	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	168 - 248	6.2e-10	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030
fragaria_vesca	FvH4_2g28280 FvH4_2g28280 FvH4_2g28280 FvH4_2g28280
malus_domestica	MD15G1131200.v1.1
prunus_persica	Prupe.1G486500_v2.0.a1 Prupe.1G486500_v2.0.a1
pyrus_communis	pycom08g13330 pycom15g11830
rosa_chinensis	RchiOBHm_Chr6g0297191
rosa_laevigata	RLG00000011623
rosa_roxburghii	Rroxscaffold_7G00170800
rosa_rugosa	Rorug06G0269700
rosa_samantha	Rh6AG380800 Rh6BG388900 Rh6CG394200 Rh6DG380800
rosa_wichuraiana	Rw6G033160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	813
Acc36I	ACCTGC	2 cut(s)	395, 813
AccB1I	GGYRCC	2 cut(s)	458, 824
AccII	CGCG	2 cut(s)	190, 571
AciI	CCGC	7 cut(s)	5, 23, 172, 188, 362, 467, 828
AclWI	GGATC	1 cut(s)	673
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	2 cut(s)	323, 721
AcuI	CTGAAG	1 cut(s)	651
AfaI	GTAC	2 cut(s)	32, 688
AfiI	CCNNNNNNNGG	3 cut(s)	404, 633, 634
AgsI	TTSAA	1 cut(s)	265
AjuI	GAANNNNNNNTTGG	2 cut(s)	464, 496
AloI	GAACNNNNNNTCC	2 cut(s)	237, 269
Alw26I	GTCTC	1 cut(s)	431
AlwI	GGATC	1 cut(s)	673
Ama87I	CYCGRG	1 cut(s)	536
AoxI	GGCC	3 cut(s)	173, 222, 463
ApeKI	GCWGC	8 cut(s)	125, 377, 386, 437, 491, 638, 818, 830
ApoI	RAATTY	2 cut(s)	323, 721
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
AspLEI	GCGC	2 cut(s)	192, 571
AspS9I	GGNCC	4 cut(s)	50, 464, 705, 761
AsuC2I	CCSGG	1 cut(s)	759
AsuHPI	GGTGA	3 cut(s)	286, 794, 848
AsuII	TTCGAA	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	536
AvaII	GGWCC	3 cut(s)	50, 705, 761
BaeGI	GKGCMC	1 cut(s)	513
BanI	GGYRCC	2 cut(s)	458, 824
BbvI	GCAGC	8 cut(s)	137, 373, 389, 424, 478, 650, 817, 830
BccI	CCATC	1 cut(s)	552
BceAI	ACGGC	1 cut(s)	472
BcnI	CCSGG	1 cut(s)	759
BcoDI	GTCTC	1 cut(s)	431
BfaI	CTAG	3 cut(s)	129, 336, 527
BfmI	CTRYAG	3 cut(s)	387, 438, 792
BfuAI	ACCTGC	2 cut(s)	395, 813
Bme1390I	CCNGG	1 cut(s)	759
Bme18I	GGWCC	3 cut(s)	50, 705, 761
BmeT110I	CYCGRG	1 cut(s)	536
BmgT120I	GGNCC	4 cut(s)	50, 464, 705, 761
BmiI	GGNNCC	4 cut(s)	52, 460, 542, 826
BmrFI	CCNGG	1 cut(s)	759
BmsI	GCATC	2 cut(s)	159, 661
BpmI	CTGGAG	1 cut(s)	519
Bpu10I	CCTNAGC	1 cut(s)	595
Bpu14I	TTCGAA	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	417
BpuMI	CCSGG	1 cut(s)	759
BsaBI	GATNNNNATC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	701
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	3 cut(s)	404, 633, 634
Bse118I	RCCGGY	1 cut(s)	461
Bse8I	GATNNNNATC	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	701
BseJI	GATNNNNATC	1 cut(s)	80
BseLI	CCNNNNNNNGG	3 cut(s)	404, 633, 634
BseSI	GKGCMC	1 cut(s)	513
BseXI	GCAGC	8 cut(s)	137, 373, 389, 424, 478, 650, 817, 830
Bsh1236I	CGCG	2 cut(s)	190, 571
BshFI	GGCC	3 cut(s)	175, 224, 465
BshNI	GGYRCC	2 cut(s)	458, 824
BsiHKCI	CYCGRG	1 cut(s)	536
BsiSI	CCGG	4 cut(s)	225, 365, 462, 759
BslI	CCNNNNNNNGG	3 cut(s)	404, 633, 634
BsmAI	GTCTC	1 cut(s)	431
BsmI	GAATGC	1 cut(s)	696
BsnI	GGCC	3 cut(s)	175, 224, 465
BsoBI	CYCGRG	1 cut(s)	536
Bsp119I	TTCGAA	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp1407I	TGTACA	1 cut(s)	686
Bsp143I	GATC	1 cut(s)	678
BspACI	CCGC	7 cut(s)	5, 23, 172, 188, 362, 467, 828
BspANI	GGCC	3 cut(s)	175, 224, 465
BspFNI	CGCG	2 cut(s)	190, 571
BspLI	GGNNCC	4 cut(s)	52, 460, 542, 826
BspMAI	CTGCAG	2 cut(s)	391, 442
BspMI	ACCTGC	2 cut(s)	395, 813
BspPI	GGATC	1 cut(s)	673
BspT104I	TTCGAA	1 cut(s)	256
BspT107I	GGYRCC	2 cut(s)	458, 824
BsrFI	RCCGGY	1 cut(s)	461
BsrGI	TGTACA	1 cut(s)	686
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	1 cut(s)	701
BssMI	GATC	1 cut(s)	678
BssT1I	CCWWGG	1 cut(s)	701
Bst4CI	ACNGT	3 cut(s)	38, 352, 686
BstAPI	GCANNNNNTGC	1 cut(s)	824
BstAUI	TGTACA	1 cut(s)	686
BstBI	TTCGAA	1 cut(s)	256
BstC8I	GCNNGC	2 cut(s)	21, 467
BstDEI	CTNAG	1 cut(s)	595
BstEII	GGTNACC	1 cut(s)	393
BstENI	CCTNNNNNAGG	1 cut(s)	402
BstFNI	CGCG	2 cut(s)	190, 571
BstHHI	GCGC	2 cut(s)	192, 571
BstKTI	GATC	1 cut(s)	681
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	1 cut(s)	678
BstMWI	GCNNNNNNNGC	5 cut(s)	326, 383, 386, 824, 827
BstNSI	RCATGY	2 cut(s)	23, 71
BstPI	GGTNACC	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	757
BstSFI	CTRYAG	3 cut(s)	387, 438, 792
BstSLI	GKGCMC	1 cut(s)	513
BstUI	CGCG	2 cut(s)	190, 571
BstV1I	GCAGC	8 cut(s)	137, 373, 389, 424, 478, 650, 817, 830
BsuRI	GGCC	3 cut(s)	175, 224, 465
BtgZI	GCGATG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	682
BveI	ACCTGC	2 cut(s)	395, 813
Cac8I	GCNNGC	2 cut(s)	21, 467
CfoI	GCGC	2 cut(s)	192, 571
Cfr10I	RCCGGY	1 cut(s)	461
Cfr13I	GGNCC	4 cut(s)	50, 464, 705, 761
Csp6I	GTAC	2 cut(s)	31, 687
CviAII	CATG	3 cut(s)	20, 68, 548
CviQI	GTAC	2 cut(s)	31, 687
DdeI	CTNAG	1 cut(s)	595
DpnI	GATC	1 cut(s)	680
DpnII	GATC	1 cut(s)	678
DraI	TTTAAA	1 cut(s)	63
EaeI	YGGCCR	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	701
Eco47I	GGWCC	3 cut(s)	50, 705, 761
Eco57I	CTGAAG	1 cut(s)	651
Eco88I	CYCGRG	1 cut(s)	536
Eco91I	GGTNACC	1 cut(s)	393
EcoNI	CCTNNNNNAGG	1 cut(s)	402
EcoO109I	RGGNCCY	1 cut(s)	50
EcoO65I	GGTNACC	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	701
EcoT22I	ATGCAT	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	701
FaeI	CATG	3 cut(s)	23, 71, 551
FatI	CATG	3 cut(s)	19, 67, 547
FauI	CCCGC	2 cut(s)	195, 474
FspBI	CTAG	3 cut(s)	129, 336, 527
GlaI	GCGC	2 cut(s)	191, 570
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	3 cut(s)	175, 224, 465
HapII	CCGG	4 cut(s)	225, 365, 462, 759
HhaI	GCGC	2 cut(s)	192, 571
Hin1II	CATG	3 cut(s)	23, 71, 551
Hin6I	GCGC	2 cut(s)	190, 569
HinP1I	GCGC	2 cut(s)	190, 569
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	5 cut(s)	76, 136, 444, 727, 839
HpaII	CCGG	4 cut(s)	225, 365, 462, 759
HphI	GGTGA	3 cut(s)	286, 794, 848
Hpy166II	GTNNAC	1 cut(s)	708
Hpy188I	TCNGA	5 cut(s)	93, 135, 159, 663, 720
Hpy188III	TCNNGA	4 cut(s)	498, 538, 589, 614
Hpy8I	GTNNAC	1 cut(s)	708
HpyAV	CCTTC	2 cut(s)	626, 733
HpyCH4III	ACNGT	3 cut(s)	38, 352, 686
HpyCH4V	TGCA	6 cut(s)	19, 329, 389, 404, 440, 518
HpyF10VI	GCNNNNNNNGC	5 cut(s)	326, 383, 386, 824, 827
HpyF3I	CTNAG	1 cut(s)	595
Hsp92II	CATG	3 cut(s)	23, 71, 551
HspAI	GCGC	2 cut(s)	190, 569
Kzo9I	GATC	1 cut(s)	678
LmnI	GCTCC	2 cut(s)	566, 813
Lsp1109I	GCAGC	8 cut(s)	137, 373, 389, 424, 478, 650, 817, 830
LweI	GCATC	2 cut(s)	159, 661
MaeI	CTAG	3 cut(s)	129, 336, 527
MaeIII	GTNAC	5 cut(s)	352, 393, 484, 550, 572
MalI	GATC	1 cut(s)	680
MboI	GATC	1 cut(s)	678
MboII	GAAGA	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	513
MluCI	AATT	6 cut(s)	116, 153, 288, 323, 721, 778
MlyI	GAGTC	2 cut(s)	453, 736
MmeI	TCCRAC	3 cut(s)	223, 547, 641
Mph1103I	ATGCAT	1 cut(s)	21
MseI	TTAA	3 cut(s)	62, 714, 777
MspA1I	CMGCKG	2 cut(s)	821, 830
MspI	CCGG	4 cut(s)	225, 365, 462, 759
MspR9I	CCNGG	1 cut(s)	759
Mva1269I	GAATGC	1 cut(s)	696
MvnI	CGCG	2 cut(s)	190, 571
MwoI	GCNNNNNNNGC	5 cut(s)	326, 383, 386, 824, 827
NciI	CCSGG	1 cut(s)	759
NdeII	GATC	1 cut(s)	678
NlaIII	CATG	3 cut(s)	23, 71, 551
NlaIV	GGNNCC	4 cut(s)	52, 460, 542, 826
NmuCI	GTSAC	1 cut(s)	550
NsiI	ATGCAT	1 cut(s)	21
NspI	RCATGY	2 cut(s)	23, 71
NspV	TTCGAA	1 cut(s)	256
PaeI	GCATGC	1 cut(s)	23
PaqCI	CACCTGC	1 cut(s)	813
PctI	GAATGC	1 cut(s)	696
PfeI	GAWTC	3 cut(s)	76, 136, 839
PleI	GAGTC	2 cut(s)	452, 735
PpsI	GAGTC	2 cut(s)	452, 735
PpuMI	RGGWCCY	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	50
PspEI	GGTNACC	1 cut(s)	393
PspN4I	GGNNCC	4 cut(s)	52, 460, 542, 826
PspPI	GGNCC	4 cut(s)	50, 464, 705, 761
PspPPI	RGGWCCY	1 cut(s)	50
PstI	CTGCAG	2 cut(s)	391, 442
PvuII	CAGCTG	1 cut(s)	821
RsaI	GTAC	2 cut(s)	32, 688
RsaNI	GTAC	2 cut(s)	31, 687
SaqAI	TTAA	3 cut(s)	62, 714, 777
Sau3AI	GATC	1 cut(s)	678
Sau96I	GGNCC	4 cut(s)	50, 464, 705, 761
SchI	GAGTC	2 cut(s)	453, 736
ScrFI	CCNGG	1 cut(s)	759
SduI	GDGCHC	1 cut(s)	513
SfaNI	GCATC	2 cut(s)	159, 661
SfcI	CTRYAG	3 cut(s)	387, 438, 792
SfuI	TTCGAA	1 cut(s)	256
SinI	GGWCC	3 cut(s)	50, 705, 761
SmlI	CTYRAG	1 cut(s)	432
SmoI	CTYRAG	1 cut(s)	432
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	6 cut(s)	116, 153, 288, 323, 721, 778
SsiI	CCGC	7 cut(s)	5, 23, 172, 188, 362, 467, 828
SspMI	CTAG	3 cut(s)	129, 336, 527
StyD4I	CCNGG	1 cut(s)	757
StyI	CCWWGG	1 cut(s)	701
TaaI	ACNGT	3 cut(s)	38, 352, 686
TaqI	TCGA	2 cut(s)	237, 256
TasI	AATT	6 cut(s)	116, 153, 288, 323, 721, 778
TatI	WGTACW	2 cut(s)	30, 686
TauI	GCSGC	3 cut(s)	175, 364, 830
TfiI	GAWTC	3 cut(s)	76, 136, 839
Tru1I	TTAA	3 cut(s)	62, 714, 777
Tru9I	TTAA	3 cut(s)	62, 714, 777
TscAI	CASTG	1 cut(s)	689
TseFI	GTSAC	1 cut(s)	550
TseI	GCWGC	8 cut(s)	125, 377, 386, 437, 491, 638, 818, 830
Tsp45I	GTSAC	1 cut(s)	550
TspRI	CASTG	1 cut(s)	689
VpaK11BI	GGWCC	3 cut(s)	50, 705, 761
XagI	CCTNNNNNAGG	1 cut(s)	402
XapI	RAATTY	2 cut(s)	323, 721
XceI	RCATGY	2 cut(s)	23, 71
XcmI	CCANNNNNNNNNTGG	1 cut(s)	818
XspI	CTAG	3 cut(s)	129, 336, 527
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.