Aberrant root formation protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030 AT5G11030 |
| fragaria_vesca | FvH4_2g28280 FvH4_2g28280 FvH4_2g28280 FvH4_2g28280 |
| malus_domestica | MD15G1131200.v1.1 |
| prunus_persica | Prupe.1G486500_v2.0.a1 Prupe.1G486500_v2.0.a1 |
| pyrus_communis | pycom08g13330 pycom15g11830 |
| rosa_chinensis | RchiOBHm_Chr6g0297191 |
| rosa_laevigata | RLG00000011623 |
| rosa_roxburghii | Rroxscaffold_7G00170800 |
| rosa_rugosa | Rorug06G0269700 |
| rosa_samantha | Rh6AG380800 Rh6BG388900 Rh6CG394200 Rh6DG380800 |
| rosa_wichuraiana | Rw6G033160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 682, 1363 |
| AccBSI | CCGCTC | 1 cut(s) | 131 |
| AciI | CCGC | 7 cut(s) | 5, 129, 608, 873, 1461, 1635, 1646 |
| AclWI | GGATC | 1 cut(s) | 545 |
| AcsI | RAATTY | 4 cut(s) | 557, 565, 595, 943 |
| AcuI | CTGAAG | 2 cut(s) | 446, 1466 |
| AcyI | GRCGYC | 3 cut(s) | 126, 282, 469 |
| AdeI | CACNNNGTG | 1 cut(s) | 392 |
| AfaI | GTAC | 5 cut(s) | 1014, 1380, 1517, 1690, 1718 |
| AflII | CTTAAG | 1 cut(s) | 962 |
| AflIII | ACRYGT | 1 cut(s) | 1263 |
| AjnI | CCWGG | 4 cut(s) | 222, 297, 1626, 1652 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 250, 282 |
| AleI | CACNNNNGTG | 1 cut(s) | 1565 |
| Alw21I | GWGCWC | 6 cut(s) | 26, 99, 181, 317, 655, 880 |
| Alw26I | GTCTC | 5 cut(s) | 94, 208, 289, 345, 1643 |
| Alw44I | GTGCAC | 2 cut(s) | 313, 876 |
| AlwI | GGATC | 1 cut(s) | 545 |
| AoxI | GGCC | 2 cut(s) | 523, 898 |
| ApaLI | GTGCAC | 2 cut(s) | 313, 876 |
| ApeKI | GCWGC | 3 cut(s) | 926, 1145, 1353 |
| ApoI | RAATTY | 4 cut(s) | 557, 565, 595, 943 |
| AseI | ATTAAT | 1 cut(s) | 1529 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 645 |
| AspLEI | GCGC | 2 cut(s) | 424, 1507 |
| AspS9I | GGNCC | 3 cut(s) | 523, 898, 1463 |
| AsuC2I | CCSGG | 1 cut(s) | 1454 |
| AsuHPI | GGTGA | 1 cut(s) | 238 |
| AsuII | TTCGAA | 2 cut(s) | 269, 443 |
| AvaII | GGWCC | 1 cut(s) | 1463 |
| AxyI | CCTNAGG | 1 cut(s) | 1479 |
| BaeGI | GKGCMC | 2 cut(s) | 317, 880 |
| BanII | GRGCYC | 2 cut(s) | 99, 181 |
| BauI | CACGAG | 1 cut(s) | 348 |
| BbsI | GAAGAC | 1 cut(s) | 159 |
| Bbv12I | GWGCWC | 6 cut(s) | 26, 99, 181, 317, 655, 880 |
| BbvCI | CCTCAGC | 1 cut(s) | 930 |
| BbvI | GCAGC | 3 cut(s) | 913, 1157, 1340 |
| BccI | CCATC | 4 cut(s) | 284, 1064, 1076, 1477 |
| BceAI | ACGGC | 1 cut(s) | 709 |
| BciT130I | CCWGG | 4 cut(s) | 224, 299, 1628, 1654 |
| BciVI | GTATCC | 1 cut(s) | 1477 |
| BclI | TGATCA | 3 cut(s) | 228, 1167, 1278 |
| BcnI | CCSGG | 1 cut(s) | 1454 |
| BcoDI | GTCTC | 5 cut(s) | 94, 208, 289, 345, 1643 |
| BfaI | CTAG | 3 cut(s) | 122, 744, 1016 |
| BfmI | CTRYAG | 1 cut(s) | 1151 |
| BfrI | CTTAAG | 1 cut(s) | 962 |
| BfuI | GTATCC | 1 cut(s) | 1477 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1643 |
| BisI | GCNGC | 4 cut(s) | 129, 927, 1146, 1354 |
| BlsI | GCNGC | 4 cut(s) | 130, 928, 1147, 1355 |
| Bme1390I | CCNGG | 5 cut(s) | 224, 299, 1454, 1628, 1654 |
| Bme18I | GGWCC | 1 cut(s) | 1463 |
| BmgT120I | GGNCC | 3 cut(s) | 523, 898, 1463 |
| BmiI | GGNNCC | 2 cut(s) | 384, 899 |
| BmrFI | CCNGG | 5 cut(s) | 224, 299, 1454, 1628, 1654 |
| BmrI | ACTGGG | 3 cut(s) | 444, 668, 798 |
| BmsI | GCATC | 3 cut(s) | 284, 1190, 1712 |
| BmuI | ACTGGG | 3 cut(s) | 444, 668, 798 |
| BpiI | GAAGAC | 1 cut(s) | 159 |
| BpmI | CTGGAG | 2 cut(s) | 320, 1558 |
| Bpu10I | CCTNAGC | 1 cut(s) | 930 |
| Bpu14I | TTCGAA | 2 cut(s) | 269, 443 |
| BpuEI | CTTGAG | 2 cut(s) | 1368, 1733 |
| BpuMI | CCSGG | 1 cut(s) | 1454 |
| BsaAI | YACGTR | 2 cut(s) | 605, 1012 |
| BsaBI | GATNNNNATC | 2 cut(s) | 549, 1310 |
| BsaHI | GRCGYC | 3 cut(s) | 126, 282, 469 |
| BsaI | GGTCTC | 1 cut(s) | 1643 |
| BsaJI | CCNNGG | 3 cut(s) | 1034, 1452, 1626 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 8, 38 |
| Bse118I | RCCGGY | 1 cut(s) | 525 |
| Bse1I | ACTGG | 4 cut(s) | 19, 439, 663, 793 |
| Bse21I | CCTNAGG | 1 cut(s) | 1479 |
| Bse8I | GATNNNNATC | 2 cut(s) | 549, 1310 |
| BseBI | CCWGG | 4 cut(s) | 224, 299, 1628, 1654 |
| BseDI | CCNNGG | 3 cut(s) | 1034, 1452, 1626 |
| BseGI | GGATG | 4 cut(s) | 295, 299, 802, 961 |
| BseJI | GATNNNNATC | 2 cut(s) | 549, 1310 |
| BseMII | CTCAG | 5 cut(s) | 105, 734, 921, 1265, 1470 |
| BseNI | ACTGG | 4 cut(s) | 19, 439, 663, 793 |
| BseRI | GAGGAG | 1 cut(s) | 947 |
| BseSI | GKGCMC | 2 cut(s) | 317, 880 |
| BseXI | GCAGC | 3 cut(s) | 913, 1157, 1340 |
| BsgI | GTGCAG | 1 cut(s) | 1325 |
| BshFI | GGCC | 2 cut(s) | 525, 900 |
| BsiHKAI | GWGCWC | 6 cut(s) | 26, 99, 181, 317, 655, 880 |
| BsiSI | CCGG | 2 cut(s) | 526, 1454 |
| BsmAI | GTCTC | 5 cut(s) | 94, 208, 289, 345, 1643 |
| BsmBI | CGTCTC | 3 cut(s) | 94, 208, 289 |
| BsmI | GAATGC | 1 cut(s) | 1210 |
| BsnI | GGCC | 2 cut(s) | 525, 900 |
| Bso31I | GGTCTC | 1 cut(s) | 1643 |
| Bsp119I | TTCGAA | 2 cut(s) | 269, 443 |
| Bsp1286I | GDGCHC | 6 cut(s) | 26, 99, 181, 317, 655, 880 |
| Bsp1407I | TGTACA | 1 cut(s) | 1515 |
| Bsp143I | GATC | 7 cut(s) | 228, 550, 891, 1167, 1278, 1569, 1741 |
| Bsp19I | CCATGG | 1 cut(s) | 1034 |
| BspACI | CCGC | 7 cut(s) | 5, 129, 608, 873, 1461, 1635, 1646 |
| BspANI | GGCC | 2 cut(s) | 525, 900 |
| BspCNI | CTCAG | 5 cut(s) | 104, 733, 922, 1264, 1471 |
| BspLI | GGNNCC | 2 cut(s) | 384, 899 |
| BspMAI | CTGCAG | 1 cut(s) | 1155 |
| BspPI | GGATC | 1 cut(s) | 545 |
| BspT104I | TTCGAA | 2 cut(s) | 269, 443 |
| BspTI | CTTAAG | 1 cut(s) | 962 |
| BspTNI | GGTCTC | 1 cut(s) | 1643 |
| BsrBI | CCGCTC | 1 cut(s) | 131 |
| BsrFI | RCCGGY | 1 cut(s) | 525 |
| BsrGI | TGTACA | 1 cut(s) | 1515 |
| BsrI | ACTGG | 4 cut(s) | 19, 439, 663, 793 |
| BssAI | RCCGGY | 1 cut(s) | 525 |
| BssECI | CCNNGG | 3 cut(s) | 1034, 1452, 1626 |
| BssMI | GATC | 7 cut(s) | 228, 550, 891, 1167, 1278, 1569, 1741 |
| BssNI | GRCGYC | 3 cut(s) | 126, 282, 469 |
| BssSI | CACGAG | 1 cut(s) | 348 |
| BssT1I | CCWWGG | 1 cut(s) | 1034 |
| Bst2BI | CACGAG | 1 cut(s) | 348 |
| Bst2UI | CCWGG | 4 cut(s) | 224, 299, 1628, 1654 |
| Bst4CI | ACNGT | 3 cut(s) | 741, 1192, 1758 |
| Bst6I | CTCTTC | 3 cut(s) | 211, 432, 1300 |
| BstACI | GRCGYC | 3 cut(s) | 126, 282, 469 |
| BstAFI | CTTAAG | 1 cut(s) | 962 |
| BstAUI | TGTACA | 1 cut(s) | 1515 |
| BstBAI | YACGTR | 2 cut(s) | 605, 1012 |
| BstBI | TTCGAA | 2 cut(s) | 269, 443 |
| BstC8I | GCNNGC | 3 cut(s) | 990, 1001, 1155 |
| BstDEI | CTNAG | 5 cut(s) | 91, 720, 930, 1251, 1479 |
| BstDSI | CCRYGG | 1 cut(s) | 1034 |
| BstEII | GGTNACC | 1 cut(s) | 1630 |
| BstF5I | GGATG | 4 cut(s) | 295, 299, 802, 961 |
| BstHHI | GCGC | 2 cut(s) | 424, 1507 |
| BstKTI | GATC | 7 cut(s) | 231, 553, 894, 1170, 1281, 1572, 1744 |
| BstMAI | GTCTC | 5 cut(s) | 94, 208, 289, 345, 1643 |
| BstMBI | GATC | 7 cut(s) | 228, 550, 891, 1167, 1278, 1569, 1741 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 176, 1154, 1214, 1643 |
| BstNI | CCWGG | 4 cut(s) | 224, 299, 1628, 1654 |
| BstNSI | RCATGY | 4 cut(s) | 358, 1003, 1055, 1267 |
| BstPI | GGTNACC | 1 cut(s) | 1630 |
| BstSCI | CCNGG | 5 cut(s) | 222, 297, 1452, 1626, 1652 |
| BstSFI | CTRYAG | 1 cut(s) | 1151 |
| BstSLI | GKGCMC | 2 cut(s) | 317, 880 |
| BstV1I | GCAGC | 3 cut(s) | 913, 1157, 1340 |
| BstV2I | GAAGAC | 1 cut(s) | 159 |
| BstX2I | RGATCY | 1 cut(s) | 550 |
| BstYI | RGATCY | 1 cut(s) | 550 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1479 |
| BsuI | GTATCC | 1 cut(s) | 1477 |
| BsuRI | GGCC | 2 cut(s) | 525, 900 |
| BtgI | CCRYGG | 1 cut(s) | 1034 |
| BtgZI | GCGATG | 1 cut(s) | 1116 |
| BtsCI | GGATG | 4 cut(s) | 295, 299, 802, 961 |
| BtsI | GCAGTG | 1 cut(s) | 1096 |
| BtsIMutI | CAGTG | 4 cut(s) | 26, 894, 1096, 1197 |
| Cac8I | GCNNGC | 3 cut(s) | 990, 1001, 1155 |
| CfoI | GCGC | 2 cut(s) | 424, 1507 |
| Cfr10I | RCCGGY | 1 cut(s) | 525 |
| Cfr13I | GGNCC | 3 cut(s) | 523, 898, 1463 |
| CseI | GACGC | 5 cut(s) | 134, 164, 271, 458, 1688 |
| CsiI | ACCWGGT | 1 cut(s) | 222 |
| Csp6I | GTAC | 5 cut(s) | 1013, 1379, 1516, 1689, 1717 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1383, 1418 |
| CviAII | CATG | 9 cut(s) | 355, 697, 902, 1000, 1035, 1052, 1129, 1174, 1264 |
| CviQI | GTAC | 5 cut(s) | 1013, 1379, 1516, 1689, 1717 |
| DdeI | CTNAG | 5 cut(s) | 91, 720, 930, 1251, 1479 |
| DpnI | GATC | 7 cut(s) | 230, 552, 893, 1169, 1280, 1571, 1743 |
| DpnII | GATC | 7 cut(s) | 228, 550, 891, 1167, 1278, 1569, 1741 |
| DraI | TTTAAA | 1 cut(s) | 1695 |
| DraIII | CACNNNGTG | 1 cut(s) | 392 |
| Eam1104I | CTCTTC | 3 cut(s) | 211, 432, 1300 |
| EarI | CTCTTC | 3 cut(s) | 211, 432, 1300 |
| EciI | GGCGGA | 3 cut(s) | 20, 1476, 1661 |
| Ecl136II | GAGCTC | 2 cut(s) | 97, 179 |
| Eco130I | CCWWGG | 1 cut(s) | 1034 |
| Eco24I | GRGCYC | 2 cut(s) | 99, 181 |
| Eco31I | GGTCTC | 1 cut(s) | 1643 |
| Eco47I | GGWCC | 1 cut(s) | 1463 |
| Eco53kI | GAGCTC | 2 cut(s) | 97, 179 |
| Eco57I | CTGAAG | 2 cut(s) | 446, 1466 |
| Eco81I | CCTNAGG | 1 cut(s) | 1479 |
| Eco91I | GGTNACC | 1 cut(s) | 1630 |
| EcoICRI | GAGCTC | 2 cut(s) | 97, 179 |
| EcoO65I | GGTNACC | 1 cut(s) | 1630 |
| EcoRI | GAATTC | 1 cut(s) | 943 |
| EcoRII | CCWGG | 4 cut(s) | 222, 297, 1626, 1652 |
| EcoT14I | CCWWGG | 1 cut(s) | 1034 |
| EcoT22I | ATGCAT | 2 cut(s) | 1183, 1727 |
| EcoT38I | GRGCYC | 2 cut(s) | 99, 181 |
| ErhI | CCWWGG | 1 cut(s) | 1034 |
| Esp3I | CGTCTC | 3 cut(s) | 94, 208, 289 |
| FaeI | CATG | 9 cut(s) | 358, 700, 905, 1003, 1038, 1055, 1132, 1177, 1267 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 438, 470, 1193, 1225 |
| FatI | CATG | 9 cut(s) | 354, 696, 901, 999, 1034, 1051, 1128, 1173, 1263 |
| FbaI | TGATCA | 3 cut(s) | 228, 1167, 1278 |
| Fnu4HI | GCNGC | 4 cut(s) | 129, 927, 1146, 1354 |
| FokI | GGATG | 4 cut(s) | 302, 306, 809, 968 |
| FriOI | GRGCYC | 2 cut(s) | 99, 181 |
| Fsp4HI | GCNGC | 4 cut(s) | 129, 927, 1146, 1354 |
| FspBI | CTAG | 3 cut(s) | 122, 744, 1016 |
| GlaI | GCGC | 2 cut(s) | 423, 1506 |
| GluI | GCNGC | 4 cut(s) | 129, 927, 1146, 1354 |
| GsuI | CTGGAG | 2 cut(s) | 320, 1558 |
| HaeIII | GGCC | 2 cut(s) | 525, 900 |
| HapII | CCGG | 2 cut(s) | 526, 1454 |
| HgaI | GACGC | 5 cut(s) | 134, 164, 271, 458, 1688 |
| HhaI | GCGC | 2 cut(s) | 424, 1507 |
| Hin1I | GRCGYC | 3 cut(s) | 126, 282, 469 |
| Hin1II | CATG | 9 cut(s) | 358, 700, 905, 1003, 1038, 1055, 1132, 1177, 1267 |
| Hin6I | GCGC | 2 cut(s) | 422, 1505 |
| HinP1I | GCGC | 2 cut(s) | 422, 1505 |
| HincII | GTYRAC | 1 cut(s) | 802 |
| HindII | GTYRAC | 1 cut(s) | 802 |
| HindIII | AAGCTT | 2 cut(s) | 644, 1215 |
| HinfI | GANTC | 6 cut(s) | 364, 407, 700, 1228, 1441, 1538 |
| HpaII | CCGG | 2 cut(s) | 526, 1454 |
| HphI | GGTGA | 1 cut(s) | 238 |
| Hpy166II | GTNNAC | 5 cut(s) | 193, 315, 347, 802, 878 |
| Hpy188III | TCNNGA | 8 cut(s) | 14, 38, 184, 554, 676, 1066, 1319, 1575 |
| Hpy8I | GTNNAC | 5 cut(s) | 193, 315, 347, 802, 878 |
| HpyAV | CCTTC | 7 cut(s) | 41, 181, 222, 470, 514, 620, 1325 |
| HpyCH4III | ACNGT | 3 cut(s) | 741, 1192, 1758 |
| HpyCH4IV | ACGT | 4 cut(s) | 604, 915, 1011, 1362 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 176, 1154, 1214, 1643 |
| HpyF3I | CTNAG | 5 cut(s) | 91, 720, 930, 1251, 1479 |
| HpySE526I | ACGT | 4 cut(s) | 604, 915, 1011, 1362 |
| Hsp92I | GRCGYC | 3 cut(s) | 126, 282, 469 |
| Hsp92II | CATG | 9 cut(s) | 358, 700, 905, 1003, 1038, 1055, 1132, 1177, 1267 |
| HspAI | GCGC | 2 cut(s) | 422, 1505 |
| Ksp22I | TGATCA | 3 cut(s) | 228, 1167, 1278 |
| Kzo9I | GATC | 7 cut(s) | 228, 550, 891, 1167, 1278, 1569, 1741 |
| LmnI | GCTCC | 3 cut(s) | 29, 301, 388 |
| Lsp1109I | GCAGC | 3 cut(s) | 913, 1157, 1340 |
| LweI | GCATC | 3 cut(s) | 284, 1190, 1712 |
| MabI | ACCWGGT | 1 cut(s) | 222 |
| MaeI | CTAG | 3 cut(s) | 122, 744, 1016 |
| MaeII | ACGT | 4 cut(s) | 604, 915, 1011, 1362 |
| MaeIII | GTNAC | 3 cut(s) | 470, 1289, 1630 |
| MalI | GATC | 7 cut(s) | 230, 552, 893, 1169, 1280, 1571, 1743 |
| MbiI | CCGCTC | 1 cut(s) | 131 |
| MboI | GATC | 7 cut(s) | 228, 550, 891, 1167, 1278, 1569, 1741 |
| MflI | RGATCY | 1 cut(s) | 550 |
| MhlI | GDGCHC | 6 cut(s) | 26, 99, 181, 317, 655, 880 |
| MmeI | TCCRAC | 4 cut(s) | 519, 603, 774, 805 |
| Mph1103I | ATGCAT | 2 cut(s) | 1183, 1727 |
| MroXI | GAANNNNTTC | 1 cut(s) | 645 |
| MseI | TTAA | 7 cut(s) | 510, 561, 963, 1044, 1329, 1529, 1694 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1101, 1565 |
| MspCI | CTTAAG | 1 cut(s) | 962 |
| MspI | CCGG | 2 cut(s) | 526, 1454 |
| MspR9I | CCNGG | 5 cut(s) | 224, 299, 1454, 1628, 1654 |
| Mva1269I | GAATGC | 1 cut(s) | 1210 |
| MvaI | CCWGG | 4 cut(s) | 224, 299, 1628, 1654 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 176, 1154, 1214, 1643 |
| NciI | CCSGG | 1 cut(s) | 1454 |
| NcoI | CCATGG | 1 cut(s) | 1034 |
| NdeII | GATC | 7 cut(s) | 228, 550, 891, 1167, 1278, 1569, 1741 |
| NlaIII | CATG | 9 cut(s) | 358, 700, 905, 1003, 1038, 1055, 1132, 1177, 1267 |
| NlaIV | GGNNCC | 2 cut(s) | 384, 899 |
| NmuCI | GTSAC | 1 cut(s) | 470 |
| NsiI | ATGCAT | 2 cut(s) | 1183, 1727 |
| NspI | RCATGY | 4 cut(s) | 358, 1003, 1055, 1267 |
| NspV | TTCGAA | 2 cut(s) | 269, 443 |
| OliI | CACNNNNGTG | 1 cut(s) | 1565 |
| PaeI | GCATGC | 1 cut(s) | 1003 |
| PciI | ACATGT | 1 cut(s) | 1263 |
| PctI | GAATGC | 1 cut(s) | 1210 |
| PdmI | GAANNNNTTC | 1 cut(s) | 645 |
| PfeI | GAWTC | 6 cut(s) | 364, 407, 700, 1228, 1441, 1538 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 682, 1363 |
| PkrI | GCNGC | 4 cut(s) | 130, 928, 1147, 1355 |
| Ppu21I | YACGTR | 2 cut(s) | 605, 1012 |
| PscI | ACATGT | 1 cut(s) | 1263 |
| PshBI | ATTAAT | 1 cut(s) | 1529 |
| Psp124BI | GAGCTC | 2 cut(s) | 99, 181 |
| Psp6I | CCWGG | 4 cut(s) | 222, 297, 1626, 1652 |
| PspEI | GGTNACC | 1 cut(s) | 1630 |
| PspGI | CCWGG | 4 cut(s) | 222, 297, 1626, 1652 |
| PspN4I | GGNNCC | 2 cut(s) | 384, 899 |
| PspPI | GGNCC | 3 cut(s) | 523, 898, 1463 |
| PstI | CTGCAG | 1 cut(s) | 1155 |
| PsuI | RGATCY | 1 cut(s) | 550 |
| RsaI | GTAC | 5 cut(s) | 1014, 1380, 1517, 1690, 1718 |
| RsaNI | GTAC | 5 cut(s) | 1013, 1379, 1516, 1689, 1717 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1101, 1565 |
| SacI | GAGCTC | 2 cut(s) | 99, 181 |
| SaqAI | TTAA | 7 cut(s) | 510, 561, 963, 1044, 1329, 1529, 1694 |
| SatI | GCNGC | 4 cut(s) | 129, 927, 1146, 1354 |
| Sau3AI | GATC | 7 cut(s) | 228, 550, 891, 1167, 1278, 1569, 1741 |
| Sau96I | GGNCC | 3 cut(s) | 523, 898, 1463 |
| ScrFI | CCNGG | 5 cut(s) | 224, 299, 1454, 1628, 1654 |
| SduI | GDGCHC | 6 cut(s) | 26, 99, 181, 317, 655, 880 |
| SexAI | ACCWGGT | 1 cut(s) | 222 |
| SfaNI | GCATC | 3 cut(s) | 284, 1190, 1712 |
| SfcI | CTRYAG | 1 cut(s) | 1151 |
| SfuI | TTCGAA | 2 cut(s) | 269, 443 |
| SinI | GGWCC | 1 cut(s) | 1463 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1101, 1565 |
| SmlI | CTYRAG | 3 cut(s) | 962, 1383, 1748 |
| SmoI | CTYRAG | 3 cut(s) | 962, 1383, 1748 |
| SphI | GCATGC | 1 cut(s) | 1003 |
| SsiI | CCGC | 7 cut(s) | 5, 129, 608, 873, 1461, 1635, 1646 |
| SspMI | CTAG | 3 cut(s) | 122, 744, 1016 |
| SstI | GAGCTC | 2 cut(s) | 99, 181 |
| StyD4I | CCNGG | 5 cut(s) | 222, 297, 1452, 1626, 1652 |
| StyI | CCWWGG | 1 cut(s) | 1034 |
| TaaI | ACNGT | 3 cut(s) | 741, 1192, 1758 |
| TaiI | ACGT | 4 cut(s) | 607, 918, 1014, 1365 |
| TaqI | TCGA | 9 cut(s) | 69, 219, 234, 269, 362, 443, 1301, 1541, 1704 |
| TatI | WGTACW | 2 cut(s) | 1515, 1688 |
| TauI | GCSGC | 1 cut(s) | 131 |
| TfiI | GAWTC | 6 cut(s) | 364, 407, 700, 1228, 1441, 1538 |
| Tru1I | TTAA | 7 cut(s) | 510, 561, 963, 1044, 1329, 1529, 1694 |
| Tru9I | TTAA | 7 cut(s) | 510, 561, 963, 1044, 1329, 1529, 1694 |
| TscAI | CASTG | 4 cut(s) | 26, 894, 1103, 1197 |
| TseFI | GTSAC | 1 cut(s) | 470 |
| TseI | GCWGC | 3 cut(s) | 926, 1145, 1353 |
| Tsp45I | GTSAC | 1 cut(s) | 470 |
| TspDTI | ATGAA | 7 cut(s) | 87, 561, 713, 849, 972, 1119, 1389 |
| TspGWI | ACGGA | 3 cut(s) | 76, 937, 1126 |
| TspRI | CASTG | 4 cut(s) | 26, 894, 1103, 1197 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 682, 1363 |
| Vha464I | CTTAAG | 1 cut(s) | 962 |
| VneI | GTGCAC | 2 cut(s) | 313, 876 |
| VpaK11BI | GGWCC | 1 cut(s) | 1463 |
| VspI | ATTAAT | 1 cut(s) | 1529 |
| XapI | RAATTY | 4 cut(s) | 557, 565, 595, 943 |
| XceI | RCATGY | 4 cut(s) | 358, 1003, 1055, 1267 |
| XmnI | GAANNNNTTC | 1 cut(s) | 645 |
| XspI | CTAG | 3 cut(s) | 122, 744, 1016 |
| Zsp2I | ATGCAT | 2 cut(s) | 1183, 1727 |