Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0012221

Physical Location & Seq

Genomic Coordinates Reverse (-)

13332982 .. 13333553

Gene Structure 572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGTAGAGAAAACTGGGAGTATAGTCCGGCCCGTGGAAGACTCTTCTAATCCGGTGGGGCCCACTTATAGACCACAAGAAAATCCAGTACTACCTGTTCCACGTGGAGTCGATCTAGGAAACTACTTTTTCGGGCCGGGCCTTCACAGACTAATCGAAGAACTAACCCAAAACGACAGGCCCGGCCCGCCTCCAGTACCTGAAATGGCAATCAACGCAATACCAACTGTGAAAATCTGCGAGGTCCATTTGAGCAATGAGTCTTGTTGCCCAATTTGCATGGAGGAGTTTAAGATTGGTGGAGAGGCGAGGGAGTTGTCATGCAATCACATATACCACAGCGAGTGTATTGTTCCGTGGCTGAGGCTCCACAACTCTTGCCCGGTTTGTCGGGTCGAGATTTCGGTATATGGTGGCGGATTGGTCGAGTCGGGGGGCTCGAATAGTGGTAGAGAGAGGCGGACAAGACGGCGCGTGAGGTGGAGTAGGTTGGGATCTTTGTGGCCATTTCGATCAAGGTATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

176

Amino Acids

19.69

Weight (kDa)

8.47

Isoelectric Point (pI)

74.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	78 - 131	1.6e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	89 - 131	5.3e-13	Ring finger domain
zf-RING_11	PF17123	90 - 117	4e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	90 - 130	1.4e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	90 - 128	8.2e-07	RING-type zinc-finger
zf-C3HC4	PF00097	90 - 130	4.6e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60360
fragaria_vesca	FvH4_2g26580 FvH4_2g26580
malus_domestica	MD08G1166600.v1.1 MD15G1352600.v1.1
prunus_persica	Prupe.1G501100_v2.0.a1
pyrus_communis	pycom08g14250
rosa_chinensis	RchiOBHm_Chr6g0295451
rosa_laevigata	RLG00000011800
rosa_multiflora	Rmu_co8384927.1_g000001 Rmu_sc0016348.1_g000002 Rmu_sc0019562.1_g000002
rosa_rugosa	Rorug06G0250900 Rorug06G0251000
rosa_samantha	Rh6AG364200 Rh6BG372500 Rh6CG378800 Rh6DG365200
rosa_wichuraiana	Rw6G031800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	474
AciI	CCGC	3 cut(s)	188, 417, 460
AclWI	GGATC	1 cut(s)	502
AcoI	YGGCCR	1 cut(s)	503
AcvI	CACGTG	1 cut(s)	104
AfaI	GTAC	2 cut(s)	90, 198
AfiI	CCNNNNNNNGG	1 cut(s)	34
AlwI	GGATC	1 cut(s)	502
AlwNI	CAGNNNCTG	1 cut(s)	200
AoxI	GGCC	7 cut(s)	29, 59, 134, 139, 179, 184, 503
ApaI	GGGCCC	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	474
AspS9I	GGNCC	8 cut(s)	30, 59, 60, 134, 139, 180, 185, 244
AsuC2I	CCSGG	3 cut(s)	138, 183, 383
AvaII	GGWCC	1 cut(s)	244
BaeGI	GKGCMC	1 cut(s)	63
BalI	TGGCCA	1 cut(s)	505
BanII	GRGCYC	2 cut(s)	63, 440
BbrPI	CACGTG	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	45
BbvCI	CCTCAGC	1 cut(s)	362
BceAI	ACGGC	1 cut(s)	485
BcnI	CCSGG	3 cut(s)	138, 183, 383
BfaI	CTAG	1 cut(s)	116
BmcAI	AGTACT	1 cut(s)	90
Bme1390I	CCNGG	3 cut(s)	138, 183, 383
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	8 cut(s)	30, 59, 60, 134, 139, 180, 185, 244
BmiI	GGNNCC	3 cut(s)	60, 61, 368
BmrFI	CCNGG	3 cut(s)	138, 183, 383
BmrI	ACTGGG	1 cut(s)	24
BmuI	ACTGGG	1 cut(s)	24
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	177
Bpu10I	CCTNAGC	1 cut(s)	362
BpuMI	CCSGG	3 cut(s)	138, 183, 383
BsaAI	YACGTR	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	33, 356
BsaWI	WCCGGW	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	3 cut(s)	19, 86, 194
Bse3DI	GCAATG	1 cut(s)	262
BseDI	CCNNGG	2 cut(s)	33, 356
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMI	GCAATG	1 cut(s)	262
BseMII	CTCAG	1 cut(s)	353
BseNI	ACTGG	3 cut(s)	19, 86, 194
BseRI	GAGGAG	1 cut(s)	299
BseSI	GKGCMC	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	474
BshFI	GGCC	7 cut(s)	31, 61, 136, 141, 181, 186, 505
BsiSI	CCGG	5 cut(s)	28, 53, 137, 183, 383
BslI	CCNNNNNNNGG	1 cut(s)	34
BsnI	GGCC	7 cut(s)	31, 61, 136, 141, 181, 186, 505
Bsp120I	GGGCCC	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	63, 440
Bsp143I	GATC	3 cut(s)	112, 494, 512
BspACI	CCGC	3 cut(s)	188, 417, 460
BspANI	GGCC	7 cut(s)	31, 61, 136, 141, 181, 186, 505
BspCNI	CTCAG	1 cut(s)	354
BspFNI	CGCG	1 cut(s)	474
BspLI	GGNNCC	3 cut(s)	60, 61, 368
BspPI	GGATC	1 cut(s)	502
BsrDI	GCAATG	1 cut(s)	262
BsrI	ACTGG	3 cut(s)	19, 86, 194
BssECI	CCNNGG	2 cut(s)	33, 356
BssMI	GATC	3 cut(s)	112, 494, 512
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	1 cut(s)	49
BstBAI	YACGTR	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	362
BstDSI	CCRYGG	2 cut(s)	33, 356
BstFNI	CGCG	1 cut(s)	474
BstHHI	GCGC	1 cut(s)	474
BstKTI	GATC	3 cut(s)	115, 497, 515
BstMBI	GATC	3 cut(s)	112, 494, 512
BstMWI	GCNNNNNNNGC	3 cut(s)	187, 215, 276
BstSCI	CCNGG	3 cut(s)	136, 181, 381
BstSLI	GKGCMC	1 cut(s)	63
BstUI	CGCG	1 cut(s)	474
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	494
BsuRI	GGCC	7 cut(s)	31, 61, 136, 141, 181, 186, 505
BtgI	CCRYGG	2 cut(s)	33, 356
Cac8I	GCNNGC	1 cut(s)	188
CaiI	CAGNNNCTG	1 cut(s)	200
CfoI	GCGC	1 cut(s)	474
Cfr13I	GGNCC	8 cut(s)	30, 59, 60, 134, 139, 180, 185, 244
Csp6I	GTAC	2 cut(s)	89, 197
CspCI	CAANNNNNGTGG	2 cut(s)	359, 394
CviAII	CATG	2 cut(s)	280, 321
CviQI	GTAC	2 cut(s)	89, 197
DdeI	CTNAG	1 cut(s)	362
DpnI	GATC	3 cut(s)	114, 496, 514
DpnII	GATC	3 cut(s)	112, 494, 512
EaeI	YGGCCR	1 cut(s)	503
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
EciI	GGCGGA	2 cut(s)	432, 475
Eco24I	GRGCYC	2 cut(s)	63, 440
Eco47I	GGWCC	1 cut(s)	244
Eco72I	CACGTG	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	59
EcoT38I	GRGCYC	2 cut(s)	63, 440
FaeI	CATG	2 cut(s)	283, 324
FaiI	YATR	8 cut(s)	23, 69, 281, 322, 332, 334, 409, 411
FatI	CATG	2 cut(s)	279, 320
FauI	CCCGC	1 cut(s)	195
FriOI	GRGCYC	2 cut(s)	63, 440
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	1 cut(s)	473
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	7 cut(s)	31, 61, 136, 141, 181, 186, 505
HapII	CCGG	5 cut(s)	28, 53, 137, 183, 383
HhaI	GCGC	1 cut(s)	474
Hin1II	CATG	2 cut(s)	283, 324
Hin6I	GCGC	1 cut(s)	472
HinP1I	GCGC	1 cut(s)	472
HinfI	GANTC	4 cut(s)	41, 108, 260, 428
HpaII	CCGG	5 cut(s)	28, 53, 137, 183, 383
Hpy188III	TCNNGA	1 cut(s)	397
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	103
HpyCH4V	TGCA	2 cut(s)	279, 324
HpyF10VI	GCNNNNNNNGC	3 cut(s)	187, 215, 276
HpyF3I	CTNAG	1 cut(s)	362
HpySE526I	ACGT	1 cut(s)	103
Hsp92II	CATG	2 cut(s)	283, 324
HspAI	GCGC	1 cut(s)	472
Kzo9I	GATC	3 cut(s)	112, 494, 512
LmnI	GCTCC	1 cut(s)	372
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	1 cut(s)	103
MalI	GATC	3 cut(s)	114, 496, 514
MboI	GATC	3 cut(s)	112, 494, 512
MboII	GAAGA	3 cut(s)	36, 50, 170
MflI	RGATCY	1 cut(s)	494
MhlI	GDGCHC	2 cut(s)	63, 440
MlsI	TGGCCA	1 cut(s)	505
MluCI	AATT	1 cut(s)	273
MluNI	TGGCCA	1 cut(s)	505
MlyI	GAGTC	4 cut(s)	35, 117, 269, 437
MnlI	CCTC	8 cut(s)	201, 235, 277, 298, 303, 357, 450, 471
Mox20I	TGGCCA	1 cut(s)	505
MscI	TGGCCA	1 cut(s)	505
MseI	TTAA	1 cut(s)	291
Msp20I	TGGCCA	1 cut(s)	505
MspI	CCGG	5 cut(s)	28, 53, 137, 183, 383
MspR9I	CCNGG	3 cut(s)	138, 183, 383
MvnI	CGCG	1 cut(s)	474
MwoI	GCNNNNNNNGC	3 cut(s)	187, 215, 276
NciI	CCSGG	3 cut(s)	138, 183, 383
NdeII	GATC	3 cut(s)	112, 494, 512
NlaIII	CATG	2 cut(s)	283, 324
NlaIV	GGNNCC	3 cut(s)	60, 61, 368
PcsI	WCGNNNNNNNCGW	1 cut(s)	437
PleI	GAGTC	4 cut(s)	35, 116, 268, 436
PmaCI	CACGTG	1 cut(s)	104
PmlI	CACGTG	1 cut(s)	104
PpsI	GAGTC	4 cut(s)	35, 116, 268, 436
Ppu21I	YACGTR	1 cut(s)	104
PspCI	CACGTG	1 cut(s)	104
PspN4I	GGNNCC	3 cut(s)	60, 61, 368
PspOMI	GGGCCC	1 cut(s)	59
PspPI	GGNCC	8 cut(s)	30, 59, 60, 134, 139, 180, 185, 244
PsrI	GAACNNNNNNTAC	2 cut(s)	81, 113
PstNI	CAGNNNCTG	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	494
RsaI	GTAC	2 cut(s)	90, 198
RsaNI	GTAC	2 cut(s)	89, 197
SaqAI	TTAA	1 cut(s)	291
Sau3AI	GATC	3 cut(s)	112, 494, 512
Sau96I	GGNCC	8 cut(s)	30, 59, 60, 134, 139, 180, 185, 244
ScaI	AGTACT	1 cut(s)	90
SchI	GAGTC	4 cut(s)	35, 117, 269, 437
ScrFI	CCNGG	3 cut(s)	138, 183, 383
SduI	GDGCHC	2 cut(s)	63, 440
SetI	ASST	7 cut(s)	97, 106, 202, 246, 482, 491, 521
SinI	GGWCC	1 cut(s)	244
Sse9I	AATT	1 cut(s)	273
SsiI	CCGC	3 cut(s)	188, 417, 460
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	3 cut(s)	136, 181, 381
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	1 cut(s)	106
TaqI	TCGA	6 cut(s)	111, 156, 396, 426, 440, 511
TasI	AATT	1 cut(s)	273
TatI	WGTACW	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TspGWI	ACGGA	1 cut(s)	345
VpaK11BI	GGWCC	1 cut(s)	244
XspI	CTAG	1 cut(s)	116
ZrmI	AGTACT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.