pycom08g14390

Selenoprotein SelK_SelG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0013435
Physical Location & Seq
Forward (+)
13594705 .. 13595297
593 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 372 bp
ATGATGTTGGGAAATGTTAGACGATTGATACTCTTGTGTCATGATTATGGAGCTGACCAGGTGGTAATTTGCATACTTATTTGTTTAGGTGTTGTGAAATCCAAGCGATCCATTTGGCGACTCAAGACGATAACTGATTTCTTCTGGGCCATTGTCAACTTGATAGGCGTGTTTTTTGCTACAATGTTCTCGATGGAAAAGTCCGATGCTTACAAAAAAGGATCTGCTTCTGGAAAGAAATGGGATGGCGGTGGCCCCGGAGGCCCTGGAGGGCCATATGGTGGCCGTCCACGTGGGCCACCTCGGGGACTAGACAATGTCCGTGGAATTGACCATAGTGCTGTACCCGCCTGCGGTTCCTGCTGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelK_SelG

Protein Analysis

124

Amino Acids

13.15

Weight (kDa)

9.47

Isoelectric Point (pI)

32.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelK_SelG PF10961 30 - 101 1.3e-20 Selenoprotein SelK_SelG
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08230 AT4G08230
fragaria_vesca FvH4_2g26460
malus_domestica MD08G1168400.v1.1
prunus_persica Prupe.1G502600_v2.0.a1
pyrus_communis pycom08g14390
rosa_chinensis RchiOBHm_Chr6g0295131
rosa_laevigata RLG00000011818
rosa_multiflora Rmu_co8078444.1_g000001 Rmu_sc0002096.1_g000018
rosa_roxburghii Rroxscaffold_171G00441380 Rroxscaffold_7G00172700
rosa_rugosa Rorug06G0249400
rosa_samantha Rh6AG362400 Rh6BG370200 Rh6CG376800 Rh6DG363200
rosa_wichuraiana Rw6G031630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 281
AciI CCGC 3 cut(s) 249, 348, 354
AclWI GGATC 2 cut(s) 102, 229
AcoI YGGCCR 1 cut(s) 283
AcvI CACGTG 1 cut(s) 293
AfaI GTAC 1 cut(s) 345
AfiI CCNNNNNNNGG 3 cut(s) 281, 305, 353
AjnI CCWGG 2 cut(s) 57, 265
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
AlwI GGATC 2 cut(s) 102, 229
Ama87I CYCGRG 1 cut(s) 303
AoxI GGCC 6 cut(s) 147, 253, 262, 272, 283, 296
AspS9I GGNCC 5 cut(s) 147, 254, 263, 272, 296
AsuC2I CCSGG 1 cut(s) 258
AvaI CYCGRG 1 cut(s) 303
BaeI ACNNNNGTAYC 2 cut(s) 20, 53
BbrPI CACGTG 1 cut(s) 293
BccI CCATC 2 cut(s) 187, 239
BceAI ACGGC 1 cut(s) 270
BciT130I CCWGG 2 cut(s) 59, 267
BcnI CCSGG 1 cut(s) 258
BfaI CTAG 1 cut(s) 311
BglI GCCNNNNNGGC 1 cut(s) 261
Bme1390I CCNGG 3 cut(s) 59, 258, 267
BmeT110I CYCGRG 1 cut(s) 303
BmgT120I GGNCC 5 cut(s) 147, 254, 263, 272, 296
BmiI GGNNCC 2 cut(s) 256, 358
BmrFI CCNGG 3 cut(s) 59, 258, 267
BmsI GCATC 1 cut(s) 196
BpmI CTGGAG 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 258
BsaAI YACGTR 1 cut(s) 293
BsaJI CCNNGG 4 cut(s) 256, 265, 302, 322
Bsc4I CCNNNNNNNGG 3 cut(s) 281, 305, 353
BseBI CCWGG 2 cut(s) 59, 267
BseDI CCNNGG 4 cut(s) 256, 265, 302, 322
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 3 cut(s) 281, 305, 353
BshFI GGCC 6 cut(s) 149, 255, 264, 274, 285, 298
BsiHKCI CYCGRG 1 cut(s) 303
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 321
BslI CCNNNNNNNGG 3 cut(s) 281, 305, 353
BsmFI GGGAC 1 cut(s) 321
BsnI GGCC 6 cut(s) 149, 255, 264, 274, 285, 298
BsoBI CYCGRG 1 cut(s) 303
Bsp143I GATC 2 cut(s) 107, 221
BspACI CCGC 3 cut(s) 249, 348, 354
BspANI GGCC 6 cut(s) 149, 255, 264, 274, 285, 298
BspHI TCATGA 1 cut(s) 40
BspLI GGNNCC 2 cut(s) 256, 358
BspPI GGATC 2 cut(s) 102, 229
BssECI CCNNGG 4 cut(s) 256, 265, 302, 322
BssMI GATC 2 cut(s) 107, 221
Bst2UI CCWGG 2 cut(s) 59, 267
BstBAI YACGTR 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 352
BstDSI CCRYGG 1 cut(s) 322
BstF5I GGATG 1 cut(s) 250
BstKTI GATC 2 cut(s) 110, 224
BstMBI GATC 2 cut(s) 107, 221
BstMWI GCNNNNNNNGC 3 cut(s) 261, 347, 360
BstNI CCWGG 2 cut(s) 59, 267
BstSCI CCNGG 3 cut(s) 57, 256, 265
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BsuRI GGCC 6 cut(s) 149, 255, 264, 274, 285, 298
BtgI CCRYGG 1 cut(s) 322
BtsCI GGATG 1 cut(s) 250
Cac8I GCNNGC 1 cut(s) 352
CciI TCATGA 1 cut(s) 40
Cfr13I GGNCC 5 cut(s) 147, 254, 263, 272, 296
CsiI ACCWGGT 1 cut(s) 57
Csp6I GTAC 1 cut(s) 344
CspCI CAANNNNNGTGG 2 cut(s) 304, 339
CviAII CATG 1 cut(s) 41
CviJI RGCY 7 cut(s) 53, 149, 255, 264, 274, 285, 298
CviKI_1 RGCY 7 cut(s) 53, 149, 255, 264, 274, 285, 298
CviQI GTAC 1 cut(s) 344
DpnI GATC 2 cut(s) 109, 223
DpnII GATC 2 cut(s) 107, 221
EaeI YGGCCR 1 cut(s) 283
Eco72I CACGTG 1 cut(s) 293
Eco88I CYCGRG 1 cut(s) 303
EcoO109I RGGNCCY 1 cut(s) 263
EcoRII CCWGG 2 cut(s) 57, 265
FaeI CATG 1 cut(s) 44
FaiI YATR 6 cut(s) 42, 48, 74, 277, 279, 336
FaqI GGGAC 1 cut(s) 321
FatI CATG 1 cut(s) 40
FauI CCCGC 1 cut(s) 355
FauNDI CATATG 1 cut(s) 277
FokI GGATG 1 cut(s) 257
FspBI CTAG 1 cut(s) 311
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 6 cut(s) 149, 255, 264, 274, 285, 298
HapII CCGG 1 cut(s) 258
Hin1II CATG 1 cut(s) 44
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 1 cut(s) 120
HpaII CCGG 1 cut(s) 258
Hpy166II GTNNAC 2 cut(s) 157, 290
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 4 cut(s) 41, 124, 190, 231
Hpy8I GTNNAC 2 cut(s) 157, 290
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 3 cut(s) 261, 347, 360
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 1 cut(s) 44
Kzo9I GATC 2 cut(s) 107, 221
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 8 cut(s) 44, 71, 130, 216, 252, 271, 279, 364
LweI GCATC 1 cut(s) 196
MabI ACCWGGT 1 cut(s) 57
MaeI CTAG 1 cut(s) 311
MaeII ACGT 1 cut(s) 292
MalI GATC 2 cut(s) 109, 223
MboI GATC 2 cut(s) 107, 221
MboII GAAGA 1 cut(s) 133
MflI RGATCY 1 cut(s) 221
MluCI AATT 2 cut(s) 66, 327
MlyI GAGTC 1 cut(s) 114
MnlI CCTC 3 cut(s) 254, 263, 312
MseI TTAA 1 cut(s) 370
MslI CAYNNNNRTG 1 cut(s) 45
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 3 cut(s) 59, 258, 267
MvaI CCWGG 2 cut(s) 59, 267
MwoI GCNNNNNNNGC 3 cut(s) 261, 347, 360
NciI CCSGG 1 cut(s) 258
NdeI CATATG 1 cut(s) 277
NdeII GATC 2 cut(s) 107, 221
NlaIII CATG 1 cut(s) 44
NlaIV GGNNCC 2 cut(s) 256, 358
PagI TCATGA 1 cut(s) 40
PflFI GACNNNGTC 1 cut(s) 317
PflMI CCANNNNNTGG 1 cut(s) 281
PleI GAGTC 1 cut(s) 114
PmaCI CACGTG 1 cut(s) 293
PmlI CACGTG 1 cut(s) 293
PpsI GAGTC 1 cut(s) 114
Ppu21I YACGTR 1 cut(s) 293
Psp6I CCWGG 2 cut(s) 57, 265
PspCI CACGTG 1 cut(s) 293
PspGI CCWGG 2 cut(s) 57, 265
PspN4I GGNNCC 2 cut(s) 256, 358
PspPI GGNCC 5 cut(s) 147, 254, 263, 272, 296
PsuI RGATCY 1 cut(s) 221
PsyI GACNNNGTC 1 cut(s) 317
RsaI GTAC 1 cut(s) 345
RsaNI GTAC 1 cut(s) 344
RseI CAYNNNNRTG 1 cut(s) 45
SaqAI TTAA 1 cut(s) 370
Sau3AI GATC 2 cut(s) 107, 221
Sau96I GGNCC 5 cut(s) 147, 254, 263, 272, 296
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 3 cut(s) 59, 258, 267
SetI ASST 5 cut(s) 55, 63, 91, 295, 304
SexAI ACCWGGT 1 cut(s) 57
SfaNI GCATC 1 cut(s) 196
SfiI GGCCNNNNNGGCC 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 45
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 2 cut(s) 66, 327
SsiI CCGC 3 cut(s) 249, 348, 354
SspMI CTAG 1 cut(s) 311
StyD4I CCNGG 3 cut(s) 57, 256, 265
TaiI ACGT 1 cut(s) 295
TaqI TCGA 1 cut(s) 191
TasI AATT 2 cut(s) 66, 327
Tru1I TTAA 1 cut(s) 370
Tru9I TTAA 1 cut(s) 370
TspGWI ACGGA 1 cut(s) 311
Tth111I GACNNNGTC 1 cut(s) 317
Van91I CCANNNNNTGG 1 cut(s) 281
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.