pycom08g14500

At1g04910-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
13748562 .. 13751610
3049 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g14500.6

Sequence Viewer

Length: 1425 bp
ATGGGAACGAAAGCAAAGGCGCACCACCACCAGTACAATGCTAATGGTGCAGGTGGTGGTGGAGGCAACGGCAGTGAGAGCAGCAGCAGCACCTCACCTAGCCCACCTCCGTCGCCTCGCCGTCACTTCACAGTCCCTCACTGCCGCCGGAAGCCCCGCGCAAAAACCATCTCCGTCGTCTCTGGTTTTCTTCTTCTCCGCCGATTCCTCCGCTTACTGGTGGTGCTTCCCCTGCTCTACGTCTCCGGCCTGCTCATGTGCATGGGCCCGTTCTCCGGTCTAGTGGGCCATACCCCTGTTCCCGGTTCCGTTTACCGCAGTCACGAGATGTTTCAGCTGCTCTGGCCTCACATTCTGGCCGATAATTCGACTCCAATTGAGTTGTCCTCTGTATGGAGATACAGAAGAAAGCTGAAAGAGCAGAAGCCTTGCCCGTCGTCAACTGCTGGACTACAATTAGATTCCCCTGGCCCTAGTGGTTACTTGATTGTGGAGGTTAATGGTGGTCTTAACCAACAACGTTCTGCGATTTGCAATGCTGTGGCACTTGCTGGCCTTTTAAATGCAGTTCTACTTATTCCTCGCTTTGAATTCCATAATGTTTGGAGGGATCCGAGCACTTTTACTGATATATACGATGAAGATCATTTCATAGCCACCCTTGAAGGCCATGTTAAAGTGGTTAAAGAACTACCGGAGATGCTGATGGAGAAATATGATCACAACATCACTACCATACCAACCCTTCATGTCCAATCTTGGGCTCCTGTCCGTTATTACACAGGAGAAGTTTATCCTGTCCTGCAAAAGGAGGGGGTTATTCGCATAGCTCCATTTGCTAATAGACTAGCAATGAATGTCCCACCTCCTATTCAGCATTTGAGATGCCTTGCTAATTATGAAGCATTGAAATTCTCTTCTCCCATATCAAATTTGGCAAATAAACTAGTTGAACGAATGACTGAGATGAGTTCAAGGACCCGTGGAAAGTATATTGCAGTCCACCTCCGCTTTGAGGAGGACATGGTGGCATTCTCATGCTGTTTGTATGATGGAGGAGAGGCTGAAAATGTTGCAATGAATTCAATTAGACAAAAAGGATGGGGAGATAAGTTCAAAAGAAAAGGCCGCGTAACTCTACCTGGTCTCAATAGGATTGATGGAAAGTGCCCACTAACCCCCTTGGAGGTTGGAATGATGCTACGGGGTATGGGGTTTGACAACAGCACTTTAATTTATTTAGCCTCAGGGAAAATCTACTGGGCAGAGAAACATTTAGCCCCTCTGCTAAAGATGTTTCCCTATCTGCATACCAAGAAGTCTCTTGCCACCCCAGATGAGCTTGCTCCTTTTGAGGTATCTTACGATCATCGAGATTGGCAGCCTTGGATTATACAGTATGCTTGCTTAGTGAGATATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

475

Amino Acids

53.22

Weight (kDa)

9.34

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 41
Acc36I ACCTGC 1 cut(s) 41
AccII CGCG 2 cut(s) 159, 1131
AciI CCGC 7 cut(s) 145, 157, 199, 211, 316, 1009, 1129
AclI AACGTT 1 cut(s) 520
AclWI GGATC 2 cut(s) 605, 618
AcoI YGGCCR 1 cut(s) 357
AcsI RAATTY 4 cut(s) 590, 911, 931, 1081
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 8 cut(s) 217, 275, 302, 393, 760, 808, 1015, 1186
AgsI TTSAA 7 cut(s) 590, 665, 910, 953, 975, 1086, 1117
AhlI ACTAGT 1 cut(s) 946
AjnI CCWGG 2 cut(s) 466, 1141
AluBI AGCT 4 cut(s) 337, 412, 830, 1342
AluI AGCT 4 cut(s) 337, 412, 830, 1342
Alw21I GWGCWC 1 cut(s) 620
Alw26I GTCTC 4 cut(s) 184, 247, 1151, 1326
AlwI GGATC 2 cut(s) 605, 618
AoxI GGCC 9 cut(s) 247, 265, 286, 344, 357, 469, 553, 667, 1126
ApaI GGGCCC 1 cut(s) 269
ApeKI GCWGC 5 cut(s) 81, 84, 87, 337, 1381
ApoI RAATTY 4 cut(s) 590, 911, 931, 1081
AspLEI GCGC 2 cut(s) 22, 161
AspS9I GGNCC 5 cut(s) 265, 266, 286, 470, 978
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 1 cut(s) 87
AvaII GGWCC 1 cut(s) 978
AxyI CCTNAGG 1 cut(s) 1246
BaeGI GKGCMC 2 cut(s) 269, 1172
BamHI GGATCC 1 cut(s) 610
BanII GRGCYC 2 cut(s) 269, 766
BauI CACGAG 1 cut(s) 323
Bbv12I GWGCWC 1 cut(s) 620
BbvI GCAGC 5 cut(s) 93, 96, 99, 324, 1393
BccI CCATC 5 cut(s) 176, 700, 1046, 1095, 1154
BceAI ACGGC 2 cut(s) 85, 105
BciT130I CCWGG 2 cut(s) 468, 1143
BclI TGATCA 1 cut(s) 718
BcnI CCSGG 1 cut(s) 303
BcoDI GTCTC 4 cut(s) 184, 247, 1151, 1326
BcuI ACTAGT 1 cut(s) 946
BfaI CTAG 5 cut(s) 99, 281, 474, 848, 947
BfuAI ACCTGC 1 cut(s) 41
BisI GCNGC 7 cut(s) 82, 85, 88, 145, 338, 1129, 1382
BlsI GCNGC 7 cut(s) 83, 86, 89, 146, 339, 1130, 1383
Bme1390I CCNGG 3 cut(s) 303, 468, 1143
Bme18I GGWCC 1 cut(s) 978
BmgT120I GGNCC 5 cut(s) 265, 266, 286, 470, 978
BmiI GGNNCC 5 cut(s) 267, 307, 612, 765, 980
BmrFI CCNGG 3 cut(s) 303, 468, 1143
BmrI ACTGGG 1 cut(s) 1270
BmsI GCATC 3 cut(s) 690, 875, 1188
BmuI ACTGGG 1 cut(s) 1270
BplI GAGNNNNNCTC 2 cut(s) 371, 403
BpuMI CCSGG 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 642
BsaI GGTCTC 1 cut(s) 1151
BsaJI CCNNGG 4 cut(s) 466, 982, 1182, 1385
BsaWI WCCGGW 2 cut(s) 275, 694
Bsc4I CCNNNNNNNGG 8 cut(s) 217, 275, 302, 393, 760, 808, 1015, 1186
Bse1I ACTGG 3 cut(s) 31, 222, 1265
Bse21I CCTNAGG 1 cut(s) 1246
Bse3DI GCAATG 3 cut(s) 541, 858, 1083
Bse8I GATNNNNATC 1 cut(s) 642
BseBI CCWGG 2 cut(s) 468, 1143
BseDI CCNNGG 4 cut(s) 466, 982, 1182, 1385
BseGI GGATG 1 cut(s) 1106
BseJI GATNNNNATC 1 cut(s) 642
BseLI CCNNNNNNNGG 8 cut(s) 217, 275, 302, 393, 760, 808, 1015, 1186
BseMI GCAATG 3 cut(s) 541, 858, 1083
BseMII CTCAG 2 cut(s) 954, 1260
BseNI ACTGG 3 cut(s) 31, 222, 1265
BseRI GAGGAG 2 cut(s) 1031, 1071
BseSI GKGCMC 2 cut(s) 269, 1172
BseXI GCAGC 5 cut(s) 93, 96, 99, 324, 1393
BsgI GTGCAG 1 cut(s) 69
Bsh1236I CGCG 2 cut(s) 159, 1131
BshFI GGCC 9 cut(s) 249, 267, 288, 346, 359, 471, 555, 669, 1128
BsiHKAI GWGCWC 1 cut(s) 620
BsiSI CCGG 5 cut(s) 148, 246, 276, 303, 695
BslFI GGGAC 2 cut(s) 119, 845
BslI CCNNNNNNNGG 8 cut(s) 217, 275, 302, 393, 760, 808, 1015, 1186
BsmAI GTCTC 4 cut(s) 184, 247, 1151, 1326
BsmBI CGTCTC 2 cut(s) 184, 247
BsmFI GGGAC 2 cut(s) 119, 845
BsmI GAATGC 1 cut(s) 1031
BsnI GGCC 9 cut(s) 249, 267, 288, 346, 359, 471, 555, 669, 1128
Bso31I GGTCTC 1 cut(s) 1151
Bsp120I GGGCCC 1 cut(s) 265
Bsp1286I GDGCHC 4 cut(s) 269, 620, 766, 1172
Bsp143I GATC 4 cut(s) 610, 643, 718, 1366
BspACI CCGC 7 cut(s) 145, 157, 199, 211, 316, 1009, 1129
BspANI GGCC 9 cut(s) 249, 267, 288, 346, 359, 471, 555, 669, 1128
BspCNI CTCAG 2 cut(s) 955, 1259
BspFNI CGCG 2 cut(s) 159, 1131
BspLI GGNNCC 5 cut(s) 267, 307, 612, 765, 980
BspMI ACCTGC 1 cut(s) 41
BspPI GGATC 2 cut(s) 605, 618
BspTNI GGTCTC 1 cut(s) 1151
BsrDI GCAATG 3 cut(s) 541, 858, 1083
BsrI ACTGG 3 cut(s) 31, 222, 1265
BssECI CCNNGG 4 cut(s) 466, 982, 1182, 1385
BssMI GATC 4 cut(s) 610, 643, 718, 1366
BssSI CACGAG 1 cut(s) 323
BssT1I CCWWGG 2 cut(s) 1182, 1385
Bst2BI CACGAG 1 cut(s) 323
Bst2UI CCWGG 2 cut(s) 468, 1143
Bst4CI ACNGT 2 cut(s) 133, 1398
Bst6I CTCTTC 1 cut(s) 922
BstC8I GCNNGC 4 cut(s) 251, 553, 1344, 1405
BstDEI CTNAG 3 cut(s) 963, 1246, 1408
BstDSI CCRYGG 1 cut(s) 982
BstENI CCTNNNNNAGG 1 cut(s) 806
BstF5I GGATG 1 cut(s) 1106
BstFNI CGCG 2 cut(s) 159, 1131
BstHHI GCGC 2 cut(s) 22, 161
BstKTI GATC 4 cut(s) 613, 646, 721, 1369
BstMAI GTCTC 4 cut(s) 184, 247, 1151, 1326
BstMBI GATC 4 cut(s) 610, 643, 718, 1366
BstMWI GCNNNNNNNGC 7 cut(s) 47, 78, 87, 232, 343, 418, 836
BstNI CCWGG 2 cut(s) 468, 1143
BstSCI CCNGG 3 cut(s) 301, 466, 1141
BstSLI GKGCMC 2 cut(s) 269, 1172
BstUI CGCG 2 cut(s) 159, 1131
BstV1I GCAGC 5 cut(s) 93, 96, 99, 324, 1393
BstX2I RGATCY 1 cut(s) 610
BstYI RGATCY 1 cut(s) 610
Bsu36I CCTNAGG 1 cut(s) 1246
BsuRI GGCC 9 cut(s) 249, 267, 288, 346, 359, 471, 555, 669, 1128
BtgI CCRYGG 1 cut(s) 982
BtsCI GGATG 1 cut(s) 1106
BtsI GCAGTG 2 cut(s) 79, 139
BtsIMutI CAGTG 2 cut(s) 79, 139
BveI ACCTGC 1 cut(s) 41
Cac8I GCNNGC 4 cut(s) 251, 553, 1344, 1405
CfoI GCGC 2 cut(s) 22, 161
Cfr13I GGNCC 5 cut(s) 265, 266, 286, 470, 978
CsiI ACCWGGT 1 cut(s) 1141
Csp6I GTAC 1 cut(s) 34
CviAII CATG 6 cut(s) 256, 262, 671, 749, 1024, 1038
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 3 cut(s) 963, 1246, 1408
DpnI GATC 4 cut(s) 612, 645, 720, 1368
DpnII GATC 4 cut(s) 610, 643, 718, 1366
DraI TTTAAA 1 cut(s) 561
EaeI YGGCCR 1 cut(s) 357
Eam1104I CTCTTC 1 cut(s) 922
EarI CTCTTC 1 cut(s) 922
EciI GGCGGA 1 cut(s) 188
Eco130I CCWWGG 2 cut(s) 1182, 1385
Eco24I GRGCYC 2 cut(s) 269, 766
Eco31I GGTCTC 1 cut(s) 1151
Eco47I GGWCC 1 cut(s) 978
Eco81I CCTNAGG 1 cut(s) 1246
EcoNI CCTNNNNNAGG 1 cut(s) 806
EcoO109I RGGNCCY 1 cut(s) 978
EcoRI GAATTC 2 cut(s) 590, 1081
EcoRII CCWGG 2 cut(s) 466, 1141
EcoT14I CCWWGG 2 cut(s) 1182, 1385
EcoT38I GRGCYC 2 cut(s) 269, 766
ErhI CCWWGG 2 cut(s) 1182, 1385
Esp3I CGTCTC 2 cut(s) 184, 247
FaeI CATG 6 cut(s) 259, 265, 674, 752, 1027, 1041
FaqI GGGAC 2 cut(s) 119, 845
FatI CATG 6 cut(s) 255, 261, 670, 748, 1023, 1037
FauI CCCGC 1 cut(s) 164
FbaI TGATCA 1 cut(s) 718
Fnu4HI GCNGC 7 cut(s) 82, 85, 88, 145, 338, 1129, 1382
FokI GGATG 1 cut(s) 1113
FriOI GRGCYC 2 cut(s) 269, 766
Fsp4HI GCNGC 7 cut(s) 82, 85, 88, 145, 338, 1129, 1382
FspBI CTAG 5 cut(s) 99, 281, 474, 848, 947
GlaI GCGC 2 cut(s) 21, 160
GluI GCNGC 7 cut(s) 82, 85, 88, 145, 338, 1129, 1382
HaeIII GGCC 9 cut(s) 249, 267, 288, 346, 359, 471, 555, 669, 1128
HapII CCGG 5 cut(s) 148, 246, 276, 303, 695
HhaI GCGC 2 cut(s) 22, 161
Hin1II CATG 6 cut(s) 259, 265, 674, 752, 1027, 1041
Hin6I GCGC 2 cut(s) 20, 159
HinP1I GCGC 2 cut(s) 20, 159
HincII GTYRAC 1 cut(s) 441
HindII GTYRAC 1 cut(s) 441
HinfI GANTC 3 cut(s) 204, 370, 461
HpaII CCGG 5 cut(s) 148, 246, 276, 303, 695
HphI GGTGA 1 cut(s) 87
Hpy166II GTNNAC 3 cut(s) 313, 441, 1003
Hpy188I TCNGA 1 cut(s) 615
Hpy188III TCNNGA 2 cut(s) 323, 1373
Hpy8I GTNNAC 3 cut(s) 313, 441, 1003
Hpy99I CGWCG 3 cut(s) 115, 179, 439
HpyAV CCTTC 2 cut(s) 659, 755
HpyCH4III ACNGT 2 cut(s) 133, 1398
HpyCH4IV ACGT 2 cut(s) 240, 520
HpyCH4V TGCA 8 cut(s) 50, 261, 534, 566, 805, 998, 1076, 1309
HpyF10VI GCNNNNNNNGC 7 cut(s) 47, 78, 87, 232, 343, 418, 836
HpyF3I CTNAG 3 cut(s) 963, 1246, 1408
HpySE526I ACGT 2 cut(s) 240, 520
Hsp92II CATG 6 cut(s) 259, 265, 674, 752, 1027, 1041
HspAI GCGC 2 cut(s) 20, 159
Ksp22I TGATCA 1 cut(s) 718
Kzo9I GATC 4 cut(s) 610, 643, 718, 1366
LmnI GCTCC 3 cut(s) 769, 835, 1351
Lsp1109I GCAGC 5 cut(s) 93, 96, 99, 324, 1393
LweI GCATC 3 cut(s) 690, 875, 1188
MabI ACCWGGT 1 cut(s) 1141
MaeI CTAG 5 cut(s) 99, 281, 474, 848, 947
MaeII ACGT 2 cut(s) 240, 520
MaeIII GTNAC 4 cut(s) 122, 320, 479, 1132
MalI GATC 4 cut(s) 612, 645, 720, 1368
MboI GATC 4 cut(s) 610, 643, 718, 1366
MboII GAAGA 5 cut(s) 182, 185, 417, 653, 909
MfeI CAATTG 1 cut(s) 375
MflI RGATCY 1 cut(s) 610
MhlI GDGCHC 4 cut(s) 269, 620, 766, 1172
MlyI GAGTC 1 cut(s) 364
MmeI TCCRAC 1 cut(s) 1171
MseI TTAA 6 cut(s) 498, 510, 560, 675, 684, 1232
MslI CAYNNNNRTG 2 cut(s) 260, 1036
MspA1I CMGCKG 1 cut(s) 337
MspI CCGG 5 cut(s) 148, 246, 276, 303, 695
MspR9I CCNGG 3 cut(s) 303, 468, 1143
MunI CAATTG 1 cut(s) 375
Mva1269I GAATGC 1 cut(s) 1031
MvaI CCWGG 2 cut(s) 468, 1143
MvnI CGCG 2 cut(s) 159, 1131
MwoI GCNNNNNNNGC 7 cut(s) 47, 78, 87, 232, 343, 418, 836
NciI CCSGG 1 cut(s) 303
NdeII GATC 4 cut(s) 610, 643, 718, 1366
NlaIII CATG 6 cut(s) 259, 265, 674, 752, 1027, 1041
NlaIV GGNNCC 5 cut(s) 267, 307, 612, 765, 980
NmuCI GTSAC 2 cut(s) 122, 320
PaqCI CACCTGC 1 cut(s) 41
PctI GAATGC 1 cut(s) 1031
PfeI GAWTC 2 cut(s) 204, 461
PkrI GCNGC 7 cut(s) 83, 86, 89, 146, 339, 1130, 1383
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PpuMI RGGWCCY 1 cut(s) 978
Psp1406I AACGTT 1 cut(s) 520
Psp5II RGGWCCY 1 cut(s) 978
Psp6I CCWGG 2 cut(s) 466, 1141
PspGI CCWGG 2 cut(s) 466, 1141
PspN4I GGNNCC 5 cut(s) 267, 307, 612, 765, 980
PspOMI GGGCCC 1 cut(s) 265
PspPI GGNCC 5 cut(s) 265, 266, 286, 470, 978
PspPPI RGGWCCY 1 cut(s) 978
PsuI RGATCY 1 cut(s) 610
PvuII CAGCTG 1 cut(s) 337
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
RseI CAYNNNNRTG 2 cut(s) 260, 1036
SaqAI TTAA 6 cut(s) 498, 510, 560, 675, 684, 1232
SatI GCNGC 7 cut(s) 82, 85, 88, 145, 338, 1129, 1382
Sau3AI GATC 4 cut(s) 610, 643, 718, 1366
Sau96I GGNCC 5 cut(s) 265, 266, 286, 470, 978
SchI GAGTC 1 cut(s) 364
ScrFI CCNGG 3 cut(s) 303, 468, 1143
SduI GDGCHC 4 cut(s) 269, 620, 766, 1172
SexAI ACCWGGT 1 cut(s) 1141
SfaNI GCATC 3 cut(s) 690, 875, 1188
SinI GGWCC 1 cut(s) 978
SmiMI CAYNNNNRTG 2 cut(s) 260, 1036
SpeI ACTAGT 1 cut(s) 946
SsiI CCGC 7 cut(s) 145, 157, 199, 211, 316, 1009, 1129
SspMI CTAG 5 cut(s) 99, 281, 474, 848, 947
StyD4I CCNGG 3 cut(s) 301, 466, 1141
StyI CCWWGG 2 cut(s) 1182, 1385
TaaI ACNGT 2 cut(s) 133, 1398
TaiI ACGT 2 cut(s) 243, 523
TaqI TCGA 2 cut(s) 368, 1372
TatI WGTACW 1 cut(s) 33
TauI GCSGC 2 cut(s) 147, 1131
TfiI GAWTC 2 cut(s) 204, 461
Tru1I TTAA 6 cut(s) 498, 510, 560, 675, 684, 1232
Tru9I TTAA 6 cut(s) 498, 510, 560, 675, 684, 1232
TscAI CASTG 2 cut(s) 79, 146
TseFI GTSAC 2 cut(s) 122, 320
TseI GCWGC 5 cut(s) 81, 84, 87, 337, 1381
Tsp45I GTSAC 2 cut(s) 122, 320
TspDTI ATGAA 6 cut(s) 640, 654, 737, 869, 915, 1094
TspGWI ACGGA 4 cut(s) 99, 163, 298, 761
TspRI CASTG 2 cut(s) 79, 146
VpaK11BI GGWCC 1 cut(s) 978
XagI CCTNNNNNAGG 1 cut(s) 806
XapI RAATTY 4 cut(s) 590, 911, 931, 1081
XcmI CCANNNNNNNNNTGG 1 cut(s) 931
XspI CTAG 5 cut(s) 99, 281, 474, 848, 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.