Rh6AG361700

At1g04910-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0008279
Physical Location & Seq
Reverse (-)
56045279 .. 56050018
4740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG361700.1

Sequence Viewer

Length: 1449 bp
ATGGGAGCCAAGGCCAAGTCCCACCACCATTACAACGGCGGCAATGGCGGTGGCTGCGGCAGCGACAGCAGCAGCAGCACATCTCCAAGCCCGCCACCGTCACCGCGCCGTAACTCTAGTTCAGTCTCCTCCTACCGCCGGAAACTCCGGTCAAAACCCATGTCGGTCGTCGCCGGCTTCCTGGTCCTCCGTCGGTTCTTGCGACTGCTGGTGGTTCTGCCCCTTCTGTACGTCTCTGGACTTGTCATGTGTGTTGGTGTGGGCCCCTTCTGCTCTCTGGTGGGCCATACCCCTCACCCCGGGTCGGTTTACCGGAGCCACGAGATATTTCAGATGCTCTGGCCTCATATTCAGGCCGACAATTCTACTCCGATCGAGTTGTCTTCTGTGTGGAGATACAGAAGGAAGCTGAAAGAGCAGAAGCCTTGTCCACATTCAACTGCAGGACCACAGTCTGACAACGCTTCCCCTAGTGGTTACTTGATAGTGGAGGTTAATGGCGGTCTTAACCAACAACGCTCTGCGATTTGCAACGCCGTGGCTCTTGCTGGACTTTTGAATGCAATTCTAGTTATTCCTCAATTTGAATTCAATAGTGTTTGGAGAGATCAAAGTACTTTTAGTGATATATATGATGAAGATCATTTCGTAGCTACCCTTGAGGGCTACGTTAGAGTGGTTAAAGAACTACCTGAGGTACTGCTGGAGAGATATGGTCATAACATCAGTAACATACCAAATATTCGTGTCGAAGCTTGGGCTCCTGTTCGGTATTACACAGGAGAAGTTTATCCTGTTCTGCAGAGCCAGGGGGTTGTACGGATAGCTCCATTTGCTAATAGGTTATCGATGAGTGTCCCACCTCCTATTCAGTATCTAAGATGCCTTTCTAATTATGAAGCATTGCAATTCTCTCCTTCCATATCAAATTTGGCAAAGAAACTAGTTGAACGAATGATAGAGAAGAGTTCAAGGAGTGGTGGAAAGTATGTTTCAATCCACCTCCGTTTTGAGGAGGACATGGTGGCATTCTCATGCTGTTTGTATGATGGAGGAGAGGCTGAAAAAGTGGAAATGAATTTAATACGACAAAAAGGGTGGGGAGATAAGTTCAAACGTAAAGGCCGTGTAACTCTGCCAGGTCTCAATAGGATTAATGGAAAATGTCCACTCACCCCCTTGGAGGTTGGAATGGTGCTACGGGGTATGGGATTTGATAATACTACTGCAATATATTTAGCATCGGGGAAAATATATAGGGCAGAGAAGCATTTAGCCCCTTTGCTGAAGATGTTTCCCTATCTGCATACTAAAGAGTCTCTTGCAACGCCAAATGAGCTTGCTCCGTTTGAGGTATCTCTTGCTAGGTTTCAGGCAATGTGCTCCCAGGAGAGTATGAGTGAACATGTTACTTTGAAATATTCTGTCCTAAAAGTTCACATACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

482

Amino Acids

53.64

Weight (kDa)

9.4

Isoelectric Point (pI)

55.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 160 - 451 6e-82 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 106
AciI CCGC 7 cut(s) 39, 48, 57, 92, 104, 136, 501
AcsI RAATTY 3 cut(s) 587, 928, 1078
AcuI CTGAAG 1 cut(s) 1307
AfaI GTAC 4 cut(s) 230, 616, 699, 819
AfiI CCNNNNNNNGG 5 cut(s) 138, 299, 304, 1012, 1183
AflIII ACRYGT 1 cut(s) 1405
AgsI TTSAA 9 cut(s) 438, 559, 587, 592, 950, 972, 996, 1114, 1417
AhlI ACTAGT 1 cut(s) 943
AjnI CCWGG 4 cut(s) 180, 807, 1138, 1386
AluBI AGCT 5 cut(s) 409, 653, 755, 827, 1339
AluI AGCT 5 cut(s) 409, 653, 755, 827, 1339
Alw21I GWGCWC 1 cut(s) 1385
Alw26I GTCTC 4 cut(s) 130, 238, 1148, 1323
Ama87I CYCGRG 1 cut(s) 299
AoxI GGCC 6 cut(s) 12, 262, 283, 341, 354, 1123
ApaI GGGCCC 1 cut(s) 266
ApeKI GCWGC 5 cut(s) 54, 60, 69, 72, 75
ApoI RAATTY 3 cut(s) 587, 928, 1078
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AseI ATTAAT 1 cut(s) 1155
AspLEI GCGC 1 cut(s) 108
AspS9I GGNCC 5 cut(s) 184, 262, 263, 283, 446
AsuC2I CCSGG 2 cut(s) 300, 301
AsuHPI GGTGA 3 cut(s) 93, 287, 1165
AvaI CYCGRG 1 cut(s) 299
AvaII GGWCC 2 cut(s) 184, 446
AxyI CCTNAGG 1 cut(s) 693
BaeGI GKGCMC 1 cut(s) 266
BanII GRGCYC 2 cut(s) 266, 763
BauI CACGAG 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 375
Bbv12I GWGCWC 1 cut(s) 1385
BbvI GCAGC 5 cut(s) 41, 72, 81, 84, 87
BccI CCATC 1 cut(s) 1043
BceAI ACGGC 4 cut(s) 52, 93, 521, 1110
BciT130I CCWGG 4 cut(s) 182, 809, 1140, 1388
BcnI CCSGG 2 cut(s) 300, 301
BcoDI GTCTC 4 cut(s) 130, 238, 1148, 1323
BcuI ACTAGT 1 cut(s) 943
BfaI CTAG 6 cut(s) 117, 471, 569, 944, 1365, 1447
BfmI CTRYAG 2 cut(s) 441, 800
BisI GCNGC 7 cut(s) 40, 55, 58, 61, 70, 73, 76
BlsI GCNGC 7 cut(s) 41, 56, 59, 62, 71, 74, 77
BmcAI AGTACT 1 cut(s) 616
Bme1390I CCNGG 6 cut(s) 182, 300, 301, 809, 1140, 1388
Bme18I GGWCC 2 cut(s) 184, 446
BmeT110I CYCGRG 1 cut(s) 299
BmgT120I GGNCC 5 cut(s) 184, 262, 263, 283, 446
BmiI GGNNCC 5 cut(s) 7, 264, 265, 317, 762
BmrFI CCNGG 6 cut(s) 182, 300, 301, 809, 1140, 1388
BmsI GCATC 3 cut(s) 324, 872, 1250
BoxI GACNNNNGTC 1 cut(s) 451
BpiI GAAGAC 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 725
BpuEI CTTGAG 1 cut(s) 680
BpuMI CCSGG 2 cut(s) 300, 301
Bsa29I ATCGAT 1 cut(s) 848
BsaBI GATNNNNATC 1 cut(s) 639
BsaI GGTCTC 1 cut(s) 1148
BsaJI CCNNGG 7 cut(s) 9, 298, 299, 537, 808, 1179, 1386
BsaWI WCCGGW 2 cut(s) 147, 312
Bsc4I CCNNNNNNNGG 5 cut(s) 138, 299, 304, 1012, 1183
Bse118I RCCGGY 1 cut(s) 173
Bse21I CCTNAGG 1 cut(s) 693
Bse3DI GCAATG 3 cut(s) 49, 902, 1383
Bse8I GATNNNNATC 1 cut(s) 639
BseBI CCWGG 4 cut(s) 182, 809, 1140, 1388
BseCI ATCGAT 1 cut(s) 848
BseDI CCNNGG 7 cut(s) 9, 298, 299, 537, 808, 1179, 1386
BseJI GATNNNNATC 1 cut(s) 639
BseLI CCNNNNNNNGG 5 cut(s) 138, 299, 304, 1012, 1183
BseMI GCAATG 3 cut(s) 49, 902, 1383
BseMII CTCAG 1 cut(s) 684
BseRI GAGGAG 3 cut(s) 118, 1028, 1068
BseSI GKGCMC 1 cut(s) 266
BseXI GCAGC 5 cut(s) 41, 72, 81, 84, 87
Bsh1236I CGCG 1 cut(s) 106
Bsh1285I CGRYCG 2 cut(s) 168, 375
BshFI GGCC 6 cut(s) 14, 264, 285, 343, 356, 1125
BshVI ATCGAT 1 cut(s) 848
BsiEI CGRYCG 2 cut(s) 168, 375
BsiHKAI GWGCWC 1 cut(s) 1385
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 5 cut(s) 139, 148, 174, 300, 313
BslFI GGGAC 2 cut(s) 4, 842
BslI CCNNNNNNNGG 5 cut(s) 138, 299, 304, 1012, 1183
BsmAI GTCTC 4 cut(s) 130, 238, 1148, 1323
BsmBI CGTCTC 1 cut(s) 238
BsmFI GGGAC 2 cut(s) 4, 842
BsmI GAATGC 2 cut(s) 565, 1028
BsnI GGCC 6 cut(s) 14, 264, 285, 343, 356, 1125
Bso31I GGTCTC 1 cut(s) 1148
BsoBI CYCGRG 1 cut(s) 299
Bsp120I GGGCCC 1 cut(s) 262
Bsp1286I GDGCHC 3 cut(s) 266, 763, 1385
Bsp143I GATC 3 cut(s) 372, 607, 640
BspACI CCGC 7 cut(s) 39, 48, 57, 92, 104, 136, 501
BspANI GGCC 6 cut(s) 14, 264, 285, 343, 356, 1125
BspCNI CTCAG 1 cut(s) 685
BspDI ATCGAT 1 cut(s) 848
BspFNI CGCG 1 cut(s) 106
BspLI GGNNCC 5 cut(s) 7, 264, 265, 317, 762
BspMAI CTGCAG 2 cut(s) 445, 804
BspTNI GGTCTC 1 cut(s) 1148
BsrDI GCAATG 3 cut(s) 49, 902, 1383
BsrFI RCCGGY 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 7 cut(s) 9, 298, 299, 537, 808, 1179, 1386
BssMI GATC 3 cut(s) 372, 607, 640
BssSI CACGAG 1 cut(s) 320
BssT1I CCWWGG 2 cut(s) 9, 1179
Bst2BI CACGAG 1 cut(s) 320
Bst2UI CCWGG 4 cut(s) 182, 809, 1140, 1388
Bst4CI ACNGT 2 cut(s) 99, 453
Bst6I CTCTTC 1 cut(s) 959
BstC8I GCNNGC 3 cut(s) 92, 175, 1341
BstDEI CTNAG 2 cut(s) 693, 878
BstDSI CCRYGG 1 cut(s) 537
BstFNI CGCG 1 cut(s) 106
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 3 cut(s) 375, 610, 643
BstMAI GTCTC 4 cut(s) 130, 238, 1148, 1323
BstMBI GATC 3 cut(s) 372, 607, 640
BstMCI CGRYCG 2 cut(s) 168, 375
BstNI CCWGG 4 cut(s) 182, 809, 1140, 1388
BstNSI RCATGY 1 cut(s) 1409
BstPAI GACNNNNGTC 1 cut(s) 451
BstSCI CCNGG 6 cut(s) 180, 298, 299, 807, 1138, 1386
BstSFI CTRYAG 2 cut(s) 441, 800
BstSLI GKGCMC 1 cut(s) 266
BstUI CGCG 1 cut(s) 106
BstV1I GCAGC 5 cut(s) 41, 72, 81, 84, 87
BstV2I GAAGAC 1 cut(s) 375
Bsu15I ATCGAT 1 cut(s) 848
Bsu36I CCTNAGG 1 cut(s) 693
BsuRI GGCC 6 cut(s) 14, 264, 285, 343, 356, 1125
BsuTUI ATCGAT 1 cut(s) 848
BtgI CCRYGG 1 cut(s) 537
Cac8I GCNNGC 3 cut(s) 92, 175, 1341
CfoI GCGC 1 cut(s) 108
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 5 cut(s) 184, 262, 263, 283, 446
Cfr9I CCCGGG 1 cut(s) 299
ClaI ATCGAT 1 cut(s) 848
Csp6I GTAC 4 cut(s) 229, 615, 698, 818
CspCI CAANNNNNGTGG 4 cut(s) 31, 66, 1079, 1114
CviAII CATG 5 cut(s) 160, 247, 1021, 1035, 1406
CviQI GTAC 4 cut(s) 229, 615, 698, 818
DdeI CTNAG 2 cut(s) 693, 878
DpnI GATC 3 cut(s) 374, 609, 642
DpnII GATC 3 cut(s) 372, 607, 640
Eam1104I CTCTTC 1 cut(s) 959
EarI CTCTTC 1 cut(s) 959
Eco130I CCWWGG 2 cut(s) 9, 1179
Eco24I GRGCYC 2 cut(s) 266, 763
Eco31I GGTCTC 1 cut(s) 1148
Eco47I GGWCC 2 cut(s) 184, 446
Eco57I CTGAAG 1 cut(s) 1307
Eco81I CCTNAGG 1 cut(s) 693
Eco88I CYCGRG 1 cut(s) 299
EcoO109I RGGNCCY 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 587
EcoRII CCWGG 4 cut(s) 180, 807, 1138, 1386
EcoT14I CCWWGG 2 cut(s) 9, 1179
EcoT38I GRGCYC 2 cut(s) 266, 763
ErhI CCWWGG 2 cut(s) 9, 1179
Esp3I CGTCTC 1 cut(s) 238
FaeI CATG 5 cut(s) 163, 250, 1024, 1038, 1409
FalI AAGNNNNNCTT 2 cut(s) 1305, 1337
FaqI GGGAC 2 cut(s) 4, 842
FatI CATG 5 cut(s) 159, 246, 1020, 1034, 1405
FauI CCCGC 1 cut(s) 99
Fnu4HI GCNGC 7 cut(s) 40, 55, 58, 61, 70, 73, 76
FriOI GRGCYC 2 cut(s) 266, 763
Fsp4HI GCNGC 7 cut(s) 40, 55, 58, 61, 70, 73, 76
FspBI CTAG 6 cut(s) 117, 471, 569, 944, 1365, 1447
GlaI GCGC 1 cut(s) 107
GluI GCNGC 7 cut(s) 40, 55, 58, 61, 70, 73, 76
GsuI CTGGAG 1 cut(s) 725
HaeIII GGCC 6 cut(s) 14, 264, 285, 343, 356, 1125
HapII CCGG 5 cut(s) 139, 148, 174, 300, 313
HhaI GCGC 1 cut(s) 108
Hin1II CATG 5 cut(s) 163, 250, 1024, 1038, 1409
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HindIII AAGCTT 1 cut(s) 753
HinfI GANTC 1 cut(s) 1316
HpaII CCGG 5 cut(s) 139, 148, 174, 300, 313
HphI GGTGA 3 cut(s) 93, 287, 1165
Hpy166II GTNNAC 5 cut(s) 310, 431, 1169, 1403, 1438
Hpy188I TCNGA 3 cut(s) 333, 372, 457
Hpy188III TCNNGA 1 cut(s) 237
Hpy8I GTNNAC 5 cut(s) 310, 431, 1169, 1403, 1438
Hpy99I CGWCG 2 cut(s) 173, 195
HpyAV CCTTC 4 cut(s) 233, 277, 396, 927
HpyCH4III ACNGT 2 cut(s) 99, 453
HpyCH4IV ACGT 3 cut(s) 231, 669, 1117
HpyCH4V TGCA 8 cut(s) 443, 531, 563, 802, 907, 1229, 1306, 1325
HpyF3I CTNAG 2 cut(s) 693, 878
HpySE526I ACGT 3 cut(s) 231, 669, 1117
Hsp92II CATG 5 cut(s) 163, 250, 1024, 1038, 1409
HspAI GCGC 1 cut(s) 106
KroI GCCGGC 1 cut(s) 173
KroNI GCCGGC 1 cut(s) 175
Kzo9I GATC 3 cut(s) 372, 607, 640
LmnI GCTCC 6 cut(s) 5, 315, 766, 832, 1348, 1388
Lsp1109I GCAGC 5 cut(s) 41, 72, 81, 84, 87
LweI GCATC 3 cut(s) 324, 872, 1250
MaeI CTAG 6 cut(s) 117, 471, 569, 944, 1365, 1447
MaeII ACGT 3 cut(s) 231, 669, 1117
MaeIII GTNAC 6 cut(s) 99, 110, 476, 728, 1129, 1408
MalI GATC 3 cut(s) 374, 609, 642
MboI GATC 3 cut(s) 372, 607, 640
MboII GAAGA 4 cut(s) 375, 650, 976, 1300
MhlI GDGCHC 3 cut(s) 266, 763, 1385
MluCI AATT 8 cut(s) 361, 564, 581, 587, 892, 908, 928, 1078
MlyI GAGTC 1 cut(s) 1325
MmeI TCCRAC 1 cut(s) 1168
MroNI GCCGGC 1 cut(s) 173
MseI TTAA 5 cut(s) 495, 507, 681, 1082, 1155
MslI CAYNNNNRTG 1 cut(s) 1033
MspI CCGG 5 cut(s) 139, 148, 174, 300, 313
MspR9I CCNGG 6 cut(s) 182, 300, 301, 809, 1140, 1388
Mva1269I GAATGC 2 cut(s) 565, 1028
MvaI CCWGG 4 cut(s) 182, 809, 1140, 1388
MvnI CGCG 1 cut(s) 106
NaeI GCCGGC 1 cut(s) 175
NciI CCSGG 2 cut(s) 300, 301
NdeII GATC 3 cut(s) 372, 607, 640
NgoMIV GCCGGC 1 cut(s) 173
NlaIII CATG 5 cut(s) 163, 250, 1024, 1038, 1409
NlaIV GGNNCC 5 cut(s) 7, 264, 265, 317, 762
NmuCI GTSAC 1 cut(s) 99
NspI RCATGY 1 cut(s) 1409
PciI ACATGT 1 cut(s) 1405
PcsI WCGNNNNNNNCGW 2 cut(s) 199, 1123
PctI GAATGC 2 cut(s) 565, 1028
PdiI GCCGGC 1 cut(s) 175
PkrI GCNGC 7 cut(s) 41, 56, 59, 62, 71, 74, 77
Ple19I CGATCG 1 cut(s) 375
PleI GAGTC 1 cut(s) 1324
PpsI GAGTC 1 cut(s) 1324
PscI ACATGT 1 cut(s) 1405
PshAI GACNNNNGTC 1 cut(s) 451
PshBI ATTAAT 1 cut(s) 1155
Psp6I CCWGG 4 cut(s) 180, 807, 1138, 1386
PspGI CCWGG 4 cut(s) 180, 807, 1138, 1386
PspN4I GGNNCC 5 cut(s) 7, 264, 265, 317, 762
PspOMI GGGCCC 1 cut(s) 262
PspPI GGNCC 5 cut(s) 184, 262, 263, 283, 446
PsrI GAACNNNNNNTAC 2 cut(s) 103, 135
PstI CTGCAG 2 cut(s) 445, 804
PvuI CGATCG 1 cut(s) 375
RsaI GTAC 4 cut(s) 230, 616, 699, 819
RsaNI GTAC 4 cut(s) 229, 615, 698, 818
RseI CAYNNNNRTG 1 cut(s) 1033
SaqAI TTAA 5 cut(s) 495, 507, 681, 1082, 1155
SatI GCNGC 7 cut(s) 40, 55, 58, 61, 70, 73, 76
Sau3AI GATC 3 cut(s) 372, 607, 640
Sau96I GGNCC 5 cut(s) 184, 262, 263, 283, 446
ScaI AGTACT 1 cut(s) 616
SchI GAGTC 1 cut(s) 1325
ScrFI CCNGG 6 cut(s) 182, 300, 301, 809, 1140, 1388
SduI GDGCHC 3 cut(s) 266, 763, 1385
SfaNI GCATC 3 cut(s) 324, 872, 1250
SfcI CTRYAG 2 cut(s) 441, 800
SinI GGWCC 2 cut(s) 184, 446
SmaI CCCGGG 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 1033
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
SpeI ACTAGT 1 cut(s) 943
Sse9I AATT 8 cut(s) 361, 564, 581, 587, 892, 908, 928, 1078
SsiI CCGC 7 cut(s) 39, 48, 57, 92, 104, 136, 501
SspI AATATT 2 cut(s) 742, 1421
SspMI CTAG 6 cut(s) 117, 471, 569, 944, 1365, 1447
StyD4I CCNGG 6 cut(s) 180, 298, 299, 807, 1138, 1386
StyI CCWWGG 2 cut(s) 9, 1179
TaaI ACNGT 2 cut(s) 99, 453
TaiI ACGT 3 cut(s) 234, 672, 1120
TaqI TCGA 3 cut(s) 375, 750, 848
TaqII GACCGA 1 cut(s) 154
TasI AATT 8 cut(s) 361, 564, 581, 587, 892, 908, 928, 1078
TatI WGTACW 1 cut(s) 614
TauI GCSGC 2 cut(s) 42, 60
Tru1I TTAA 5 cut(s) 495, 507, 681, 1082, 1155
Tru9I TTAA 5 cut(s) 495, 507, 681, 1082, 1155
TseFI GTSAC 1 cut(s) 99
TseI GCWGC 5 cut(s) 54, 60, 69, 72, 75
Tsp45I GTSAC 1 cut(s) 99
TspDTI ATGAA 3 cut(s) 651, 912, 1091
TspGWI ACGGA 4 cut(s) 179, 835, 995, 1335
TspMI CCCGGG 1 cut(s) 299
VpaK11BI GGWCC 2 cut(s) 184, 446
VspI ATTAAT 1 cut(s) 1155
XapI RAATTY 3 cut(s) 587, 928, 1078
XceI RCATGY 1 cut(s) 1409
XcmI CCANNNNNNNNNTGG 1 cut(s) 928
XmaI CCCGGG 1 cut(s) 299
XspI CTAG 6 cut(s) 117, 471, 569, 944, 1365, 1447
ZrmI AGTACT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.