Rorug06G0248500

At1g04910-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008279
Physical Location & Seq
Reverse (-)
39503632 .. 39504948
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0248500.1

Sequence Viewer

Length: 1050 bp
ATGTCGTCACTCTCCCTCCTCCTCCTCCTCCTCCTCCCCTTCTTCCTCCTCCACTCCTCCATTGCAGCAACACCACCTTCAGTTCAAACCCTAAGCACAAAGCCAACCATCTTTAACCCCAAGCTCCCTCCTCGAACCCTCTCCTCCTCCAAGAAGTTCGAGGGCTCCTCAGATCTGGTGCAGCTCCGCTACCACATGGGCCCCGTCCTCTCCTCCGCCCCTATTAACATCTACCTCATCTGGTACGGCCGTTGGGCCTTACCCCAGAAGCTCCTCATCAAGGACTTCCTCCACTCCATCTCCACCACCGACCTCCGCGCCGCTCCGTCGCCCTCCGTCGCCGAGTGGTGGCGCACTGTCTCGCTCTACACCGACCAGACCGGCGCCAACGTCTCCCGCTCCGTCGTCGTCGCGGGGGAGCACGCTGACCTCAAGTACTCCCACGGCAAGCAACTCACCCGCCTCTCCGTCCAGCAGGTCATCGCCAACGCCGTCAGATCTGCTCCGTTCCCGGTCGACCACAAGAACGGGATCTACCTCATCCTGACCTCCGAGGACGTCGCCATGCAGGACTTCTGCCGCGCCGTCTGCGGCTTCCACTACTTCACATTCCCCTCCATGGTGGGTTACACGCTCCCCTACGCTTGGATCGGAAACTCCGGCAAGCAGTGCCCGGAGGTCTGCGCCTACCCGTTTGCTCTTCCCGGCTACATGGGCGGAGGCGGTCCCGGAGCTCTGTCGCCGCCGAACAAGGACGTCGGCGTCGACGGTATGATCAGTGTGATCGGGCACGAGCTGGCCGAGCTGTCGTCGAACCCTCTTGTCAATGCCTGGTACGCCGGCGAGGACCCGACGGCGCCGACTGAGATCGGGGACTTGTGCGAGGGGTTGTACGGAACAGGAGGCGGAGGTGGGTACATTGGGCAGGTGATGAGGGATAGAGAAGGGAGGACGTTCAATGTGAATGGGAGGAAGGGGAGGAAGTTCTTGGTGCAGTGGCTATGGAGCCCTGAACTGAAGGCCTGTGCTGGGCCTAATGCTATGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

349

Amino Acids

37.9

Weight (kDa)

8.15

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 62 - 344 4.1e-102 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 916
AasI GACNNNNNNGTC 1 cut(s) 761
AatII GACGTC 2 cut(s) 561, 759
Acc36I ACCTGC 2 cut(s) 466, 916
AccB1I GGYRCC 2 cut(s) 383, 856
AccBSI CCGCTC 2 cut(s) 323, 399
AccI GTMKAC 2 cut(s) 516, 765
AccII CGCG 3 cut(s) 318, 413, 582
AclWI GGATC 2 cut(s) 539, 656
AcoI YGGCCR 2 cut(s) 247, 798
AcuI CTGAAG 2 cut(s) 63, 1037
AcyI GRCGYC 5 cut(s) 384, 558, 756, 762, 857
AfaI GTAC 5 cut(s) 245, 437, 836, 893, 917
AfiI CCNNNNNNNGG 5 cut(s) 280, 348, 619, 645, 1029
AgsI TTSAA 2 cut(s) 86, 958
AjnI CCWGG 1 cut(s) 830
AluBI AGCT 6 cut(s) 124, 184, 271, 734, 796, 805
AluI AGCT 6 cut(s) 124, 184, 271, 734, 796, 805
Alw21I GWGCWC 2 cut(s) 423, 736
Alw26I GTCTC 2 cut(s) 364, 397
AlwI GGATC 2 cut(s) 539, 656
AoxI GGCC 6 cut(s) 199, 247, 255, 798, 1020, 1031
ApaI GGGCCC 1 cut(s) 203
ApeKI GCWGC 2 cut(s) 65, 181
AspLEI GCGC 6 cut(s) 320, 354, 386, 584, 686, 859
AspS9I GGNCC 6 cut(s) 199, 200, 255, 725, 847, 1031
AsuC2I CCSGG 4 cut(s) 512, 674, 705, 729
AsuHPI GGTGA 2 cut(s) 448, 940
AvaII GGWCC 2 cut(s) 725, 847
BaeGI GKGCMC 3 cut(s) 203, 674, 792
BaeI ACNNNNGTAYC 2 cut(s) 235, 268
BanI GGYRCC 2 cut(s) 383, 856
BanII GRGCYC 4 cut(s) 167, 203, 736, 1010
BauI CACGAG 1 cut(s) 791
Bbv12I GWGCWC 2 cut(s) 423, 736
BbvI GCAGC 2 cut(s) 77, 193
BccI CCATC 2 cut(s) 116, 305
BceAI ACGGC 6 cut(s) 234, 262, 460, 476, 569, 870
BciT130I CCWGG 1 cut(s) 832
BclI TGATCA 1 cut(s) 774
BcnI CCSGG 4 cut(s) 512, 674, 705, 729
BcoDI GTCTC 2 cut(s) 364, 397
BfoI RGCGCY 2 cut(s) 387, 860
BfuAI ACCTGC 2 cut(s) 466, 916
BglII AGATCT 2 cut(s) 172, 497
BisI GCNGC 6 cut(s) 66, 182, 321, 580, 592, 743
BlsI GCNGC 6 cut(s) 67, 183, 322, 581, 593, 744
BmcAI AGTACT 1 cut(s) 437
Bme1390I CCNGG 5 cut(s) 512, 674, 705, 729, 832
Bme18I GGWCC 2 cut(s) 725, 847
BmgT120I GGNCC 6 cut(s) 199, 200, 255, 725, 847, 1031
BmiI GGNNCC 8 cut(s) 166, 201, 202, 385, 727, 849, 858, 1007
BmrFI CCNGG 5 cut(s) 512, 674, 705, 729, 832
BplI GAGNNNNNCTC 2 cut(s) 152, 184
Bpu10I CCTNAGC 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 416
BpuMI CCSGG 4 cut(s) 512, 674, 705, 729
BsaHI GRCGYC 5 cut(s) 384, 558, 756, 762, 857
BsaJI CCNNGG 3 cut(s) 442, 552, 618
BsaXI ACNNNNNCTCC 3 cut(s) 30, 284, 314
Bsc4I CCNNNNNNNGG 5 cut(s) 280, 348, 619, 645, 1029
Bse118I RCCGGY 2 cut(s) 380, 839
Bse3DI GCAATG 1 cut(s) 60
BseBI CCWGG 1 cut(s) 832
BseDI CCNNGG 3 cut(s) 442, 552, 618
BseGI GGATG 1 cut(s) 540
BseLI CCNNNNNNNGG 5 cut(s) 280, 348, 619, 645, 1029
BseMI GCAATG 1 cut(s) 60
BseMII CTCAG 2 cut(s) 183, 855
BseSI GKGCMC 3 cut(s) 203, 674, 792
BseX3I CGGCCG 1 cut(s) 247
BseXI GCAGC 2 cut(s) 77, 193
BseYI CCCAGC 1 cut(s) 1028
BsgI GTGCAG 2 cut(s) 200, 1013
Bsh1236I CGCG 3 cut(s) 318, 413, 582
Bsh1285I CGRYCG 2 cut(s) 250, 516
BshFI GGCC 6 cut(s) 201, 249, 257, 800, 1022, 1033
BshNI GGYRCC 2 cut(s) 383, 856
BsiEI CGRYCG 2 cut(s) 250, 516
BsiHKAI GWGCWC 2 cut(s) 423, 736
BsiSI CCGG 7 cut(s) 381, 512, 660, 674, 705, 729, 840
BslFI GGGAC 2 cut(s) 711, 887
BslI CCNNNNNNNGG 5 cut(s) 280, 348, 619, 645, 1029
BsmAI GTCTC 2 cut(s) 364, 397
BsmBI CGTCTC 1 cut(s) 397
BsmFI GGGAC 2 cut(s) 711, 887
BsnI GGCC 6 cut(s) 201, 249, 257, 800, 1022, 1033
Bsp120I GGGCCC 1 cut(s) 199
Bsp1286I GDGCHC 7 cut(s) 167, 203, 423, 674, 736, 792, 1010
Bsp143I GATC 7 cut(s) 172, 497, 531, 648, 774, 783, 867
Bsp19I CCATGG 1 cut(s) 618
BspANI GGCC 6 cut(s) 201, 249, 257, 800, 1022, 1033
BspCNI CTCAG 2 cut(s) 182, 856
BspFNI CGCG 3 cut(s) 318, 413, 582
BspLI GGNNCC 8 cut(s) 166, 201, 202, 385, 727, 849, 858, 1007
BspMI ACCTGC 2 cut(s) 466, 916
BspPI GGATC 2 cut(s) 539, 656
BspQI GCTCTTC 1 cut(s) 705
BspT107I GGYRCC 2 cut(s) 383, 856
BsrBI CCGCTC 2 cut(s) 323, 399
BsrDI GCAATG 1 cut(s) 60
BsrFI RCCGGY 2 cut(s) 380, 839
BssAI RCCGGY 2 cut(s) 380, 839
BssECI CCNNGG 3 cut(s) 442, 552, 618
BssMI GATC 7 cut(s) 172, 497, 531, 648, 774, 783, 867
BssNI GRCGYC 5 cut(s) 384, 558, 756, 762, 857
BssSI CACGAG 1 cut(s) 791
BssT1I CCWWGG 1 cut(s) 618
Bst2BI CACGAG 1 cut(s) 791
Bst2UI CCWGG 1 cut(s) 832
Bst4CI ACNGT 2 cut(s) 358, 770
Bst6I CTCTTC 1 cut(s) 705
BstACI GRCGYC 5 cut(s) 384, 558, 756, 762, 857
BstAPI GCANNNNNTGC 1 cut(s) 669
BstC8I GCNNGC 5 cut(s) 423, 449, 665, 798, 841
BstDEI CTNAG 3 cut(s) 92, 169, 864
BstDSI CCRYGG 2 cut(s) 442, 618
BstENI CCTNNNNNAGG 1 cut(s) 278
BstF5I GGATG 1 cut(s) 540
BstFNI CGCG 3 cut(s) 318, 413, 582
BstH2I RGCGCY 2 cut(s) 387, 860
BstHHI GCGC 6 cut(s) 320, 354, 386, 584, 686, 859
BstKTI GATC 7 cut(s) 175, 500, 534, 651, 777, 786, 870
BstMAI GTCTC 2 cut(s) 364, 397
BstMBI GATC 7 cut(s) 172, 497, 531, 648, 774, 783, 867
BstMCI CGRYCG 2 cut(s) 250, 516
BstMWI GCNNNNNNNGC 5 cut(s) 588, 669, 714, 802, 836
BstNI CCWGG 1 cut(s) 832
BstSCI CCNGG 5 cut(s) 510, 672, 703, 727, 830
BstSLI GKGCMC 3 cut(s) 203, 674, 792
BstUI CGCG 3 cut(s) 318, 413, 582
BstV1I GCAGC 2 cut(s) 77, 193
BstX2I RGATCY 3 cut(s) 172, 497, 531
BstYI RGATCY 3 cut(s) 172, 497, 531
BstZI CGGCCG 1 cut(s) 247
BsuRI GGCC 6 cut(s) 201, 249, 257, 800, 1022, 1033
BtgI CCRYGG 2 cut(s) 442, 618
BtgZI GCGATG 1 cut(s) 466
BtsCI GGATG 1 cut(s) 540
BtsI GCAGTG 2 cut(s) 674, 1001
BtsIMutI CAGTG 4 cut(s) 354, 674, 784, 1001
BveI ACCTGC 2 cut(s) 466, 916
Cac8I GCNNGC 5 cut(s) 423, 449, 665, 798, 841
CfoI GCGC 6 cut(s) 320, 354, 386, 584, 686, 859
Cfr10I RCCGGY 2 cut(s) 380, 839
Cfr13I GGNCC 6 cut(s) 199, 200, 255, 725, 847, 1031
CseI GACGC 1 cut(s) 751
Csp6I GTAC 5 cut(s) 244, 436, 835, 892, 916
CviAII CATG 4 cut(s) 196, 565, 619, 712
CviQI GTAC 5 cut(s) 244, 436, 835, 892, 916
DdeI CTNAG 3 cut(s) 92, 169, 864
DinI GGCGCC 2 cut(s) 385, 858
DpnI GATC 7 cut(s) 174, 499, 533, 650, 776, 785, 869
DpnII GATC 7 cut(s) 172, 497, 531, 648, 774, 783, 867
DrdI GACNNNNNNGTC 1 cut(s) 761
DseDI GACNNNNNNGTC 1 cut(s) 761
EaeI YGGCCR 2 cut(s) 247, 798
EagI CGGCCG 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 705
EarI CTCTTC 1 cut(s) 705
EciI GGCGGA 3 cut(s) 205, 732, 921
Ecl136II GAGCTC 1 cut(s) 734
EclXI CGGCCG 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 618
Eco147I AGGCCT 1 cut(s) 1022
Eco24I GRGCYC 4 cut(s) 167, 203, 736, 1010
Eco47I GGWCC 2 cut(s) 725, 847
Eco52I CGGCCG 1 cut(s) 247
Eco53kI GAGCTC 1 cut(s) 734
Eco57I CTGAAG 2 cut(s) 63, 1037
EcoICRI GAGCTC 1 cut(s) 734
EcoNI CCTNNNNNAGG 1 cut(s) 278
EcoO109I RGGNCCY 2 cut(s) 200, 847
EcoRII CCWGG 1 cut(s) 830
EcoT14I CCWWGG 1 cut(s) 618
EcoT38I GRGCYC 4 cut(s) 167, 203, 736, 1010
EgeI GGCGCC 2 cut(s) 385, 858
EheI GGCGCC 2 cut(s) 385, 858
ErhI CCWWGG 1 cut(s) 618
Esp3I CGTCTC 1 cut(s) 397
FaeI CATG 4 cut(s) 199, 568, 622, 715
FaiI YATR 7 cut(s) 197, 566, 620, 713, 773, 1003, 1043
FaqI GGGAC 2 cut(s) 711, 887
FatI CATG 4 cut(s) 195, 564, 618, 711
FauI CCCGC 3 cut(s) 404, 406, 467
FbaI TGATCA 1 cut(s) 774
FblI GTMKAC 2 cut(s) 516, 765
Fnu4HI GCNGC 6 cut(s) 66, 182, 321, 580, 592, 743
FokI GGATG 1 cut(s) 527
FriOI GRGCYC 4 cut(s) 167, 203, 736, 1010
Fsp4HI GCNGC 6 cut(s) 66, 182, 321, 580, 592, 743
GlaI GCGC 6 cut(s) 319, 353, 385, 583, 685, 858
GluI GCNGC 6 cut(s) 66, 182, 321, 580, 592, 743
GsaI CCCAGC 1 cut(s) 1032
HaeII RGCGCY 2 cut(s) 387, 860
HaeIII GGCC 6 cut(s) 201, 249, 257, 800, 1022, 1033
HapII CCGG 7 cut(s) 381, 512, 660, 674, 705, 729, 840
HgaI GACGC 1 cut(s) 751
HhaI GCGC 6 cut(s) 320, 354, 386, 584, 686, 859
Hin1I GRCGYC 5 cut(s) 384, 558, 756, 762, 857
Hin1II CATG 4 cut(s) 199, 568, 622, 715
Hin6I GCGC 6 cut(s) 318, 352, 384, 582, 684, 857
HinP1I GCGC 6 cut(s) 318, 352, 384, 582, 684, 857
HincII GTYRAC 2 cut(s) 517, 766
HindII GTYRAC 2 cut(s) 517, 766
HpaII CCGG 7 cut(s) 381, 512, 660, 674, 705, 729, 840
HphI GGTGA 2 cut(s) 448, 940
Hpy166II GTNNAC 2 cut(s) 517, 766
Hpy188I TCNGA 4 cut(s) 172, 497, 553, 653
Hpy188III TCNNGA 1 cut(s) 544
Hpy8I GTNNAC 2 cut(s) 517, 766
HpyAV CCTTC 5 cut(s) 49, 87, 938, 967, 1012
HpyCH4III ACNGT 2 cut(s) 358, 770
HpyCH4IV ACGT 4 cut(s) 390, 558, 756, 953
HpyCH4V TGCA 4 cut(s) 65, 181, 568, 994
HpyF10VI GCNNNNNNNGC 5 cut(s) 588, 669, 714, 802, 836
HpyF3I CTNAG 3 cut(s) 92, 169, 864
HpySE526I ACGT 4 cut(s) 390, 558, 756, 953
Hsp92I GRCGYC 5 cut(s) 384, 558, 756, 762, 857
Hsp92II CATG 4 cut(s) 199, 568, 622, 715
HspAI GCGC 6 cut(s) 318, 352, 384, 582, 684, 857
KasI GGCGCC 2 cut(s) 383, 856
KroI GCCGGC 1 cut(s) 839
KroNI GCCGGC 1 cut(s) 841
Ksp22I TGATCA 1 cut(s) 774
Kzo9I GATC 7 cut(s) 172, 497, 531, 648, 774, 783, 867
LguI GCTCTTC 1 cut(s) 705
Lsp1109I GCAGC 2 cut(s) 77, 193
MaeII ACGT 4 cut(s) 390, 558, 756, 953
MaeIII GTNAC 2 cut(s) 6, 626
MalI GATC 7 cut(s) 174, 499, 533, 650, 776, 785, 869
MbiI CCGCTC 2 cut(s) 323, 399
MboI GATC 7 cut(s) 172, 497, 531, 648, 774, 783, 867
MboII GAAGA 2 cut(s) 34, 692
MflI RGATCY 3 cut(s) 172, 497, 531
MhlI GDGCHC 7 cut(s) 167, 203, 423, 674, 736, 792, 1010
Mly113I GGCGCC 2 cut(s) 384, 857
MreI CGCCGGCG 1 cut(s) 839
MroNI GCCGGC 1 cut(s) 839
MseI TTAA 3 cut(s) 114, 225, 1048
MspI CCGG 7 cut(s) 381, 512, 660, 674, 705, 729, 840
MspR9I CCNGG 5 cut(s) 512, 674, 705, 729, 832
MvaI CCWGG 1 cut(s) 832
MvnI CGCG 3 cut(s) 318, 413, 582
MwoI GCNNNNNNNGC 5 cut(s) 588, 669, 714, 802, 836
NaeI GCCGGC 1 cut(s) 841
NarI GGCGCC 2 cut(s) 384, 857
NciI CCSGG 4 cut(s) 512, 674, 705, 729
NcoI CCATGG 1 cut(s) 618
NdeII GATC 7 cut(s) 172, 497, 531, 648, 774, 783, 867
NgoMIV GCCGGC 1 cut(s) 839
NlaIII CATG 4 cut(s) 199, 568, 622, 715
NlaIV GGNNCC 8 cut(s) 166, 201, 202, 385, 727, 849, 858, 1007
NmeAIII GCCGAG 2 cut(s) 367, 826
NmuCI GTSAC 1 cut(s) 6
PaqCI CACCTGC 1 cut(s) 916
PceI AGGCCT 1 cut(s) 1022
PciSI GCTCTTC 1 cut(s) 705
PcsI WCGNNNNNNNCGW 3 cut(s) 489, 762, 798
PdiI GCCGGC 1 cut(s) 841
PfoI TCCNGGA 1 cut(s) 727
PkrI GCNGC 6 cut(s) 67, 183, 322, 581, 593, 744
PluTI GGCGCC 2 cut(s) 387, 860
PpuMI RGGWCCY 1 cut(s) 847
Psp124BI GAGCTC 1 cut(s) 736
Psp5II RGGWCCY 1 cut(s) 847
Psp6I CCWGG 1 cut(s) 830
PspFI CCCAGC 1 cut(s) 1028
PspGI CCWGG 1 cut(s) 830
PspN4I GGNNCC 8 cut(s) 166, 201, 202, 385, 727, 849, 858, 1007
PspOMI GGGCCC 1 cut(s) 199
PspPI GGNCC 6 cut(s) 199, 200, 255, 725, 847, 1031
PspPPI RGGWCCY 1 cut(s) 847
PsrI GAACNNNNNNTAC 2 cut(s) 518, 550
PsuI RGATCY 3 cut(s) 172, 497, 531
RsaI GTAC 5 cut(s) 245, 437, 836, 893, 917
RsaNI GTAC 5 cut(s) 244, 436, 835, 892, 916
SacI GAGCTC 1 cut(s) 736
SalI GTCGAC 2 cut(s) 515, 764
SapI GCTCTTC 1 cut(s) 705
SaqAI TTAA 3 cut(s) 114, 225, 1048
SatI GCNGC 6 cut(s) 66, 182, 321, 580, 592, 743
Sau3AI GATC 7 cut(s) 172, 497, 531, 648, 774, 783, 867
Sau96I GGNCC 6 cut(s) 199, 200, 255, 725, 847, 1031
ScaI AGTACT 1 cut(s) 437
ScrFI CCNGG 5 cut(s) 512, 674, 705, 729, 832
SduI GDGCHC 7 cut(s) 167, 203, 423, 674, 736, 792, 1010
SfoI GGCGCC 2 cut(s) 385, 858
SgrAI CRCCGGYG 1 cut(s) 839
SgrDI CGTCGACG 1 cut(s) 764
SinI GGWCC 2 cut(s) 725, 847
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
SseBI AGGCCT 1 cut(s) 1022
SspDI GGCGCC 2 cut(s) 383, 856
SstI GAGCTC 1 cut(s) 736
StuI AGGCCT 1 cut(s) 1022
StyD4I CCNGG 5 cut(s) 510, 672, 703, 727, 830
StyI CCWWGG 1 cut(s) 618
TaaI ACNGT 2 cut(s) 358, 770
TaiI ACGT 4 cut(s) 393, 561, 759, 956
TaqI TCGA 5 cut(s) 133, 159, 516, 765, 812
TatI WGTACW 1 cut(s) 435
TauI GCSGC 4 cut(s) 323, 582, 594, 745
Tru1I TTAA 3 cut(s) 114, 225, 1048
Tru9I TTAA 3 cut(s) 114, 225, 1048
TscAI CASTG 4 cut(s) 361, 674, 784, 1001
TseFI GTSAC 1 cut(s) 6
TseI GCWGC 2 cut(s) 65, 181
Tsp45I GTSAC 1 cut(s) 6
TspGWI ACGGA 6 cut(s) 315, 325, 391, 457, 495, 909
TspRI CASTG 4 cut(s) 361, 674, 784, 1001
VpaK11BI GGWCC 2 cut(s) 725, 847
XagI CCTNNNNNAGG 1 cut(s) 278
XmiI GTMKAC 2 cut(s) 516, 765
ZraI GACGTC 2 cut(s) 559, 757
ZrmI AGTACT 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.