pycom08g15270

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0016354
Physical Location & Seq
Reverse (-)
14870860 .. 14872020
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 618 bp
ATGGAGAGATTGATCTATGTTTCATTCATTTTGACCACTTGTGTTATGTTGGCAAATTGTGCACGAATCCATGTTGTTGATCCACTGTCGTATGCACCATCACCGGAACCAAGCTCGCTGGACGTACCAACAACAGTAGGCTCACCAAGCTCAGATGATTGTAACGATGTGCTATACGGAATGGCCGATTGCATTCCCTTTTTAAGCGATGGGGACACAAACACAAAGCCGGAAGGTTCGTGTTGTTCTGGGTTGGAGATGGTCCTAAAAGCCAGTGATGACTGCATATGTGAAGCCATAGAAAGTAGCACTGATATGGGTATTCCTATAAATATGACAAAGGCGATGACATTGCCTTCTGCTTGTGAAATCTCTGCACCTTCTTTTCTTAGTGAATGTAACCTCCCATTGCCTCCTGGTGCAAGTCCTCATGTTCATCCAACTCCAAAATCATCACCAAAGAGTCAATCTCCAGAACCGAGCCAGTCACCAACAAGTTCCATCAACGTAGTTCCAGCACCCGTCACTGCTCCACATGCCGGAACATACTCATTATCTGCCTCTCTAGTGCTCATACTTAGCATGCTTTCTGCATCATTCTACTGTATTTCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

206

Amino Acids

21.44

Weight (kDa)

4.33

Isoelectric Point (pI)

65.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 45 - 129 1.7e-15 Probable lipid transfer
Tryp_alpha_amyl PF00234 54 - 128 1.3e-11 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016354)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37990
malus_domestica MD15G1363600.v1.1
prunus_persica Prupe.1G512100_v2.0.a1
pyrus_communis pycom08g15270
rosa_chinensis RchiOBHm_Chr7g0239921
rosa_laevigata RLG00000000718
rosa_multiflora Rmu_sc0000540.1_g000034
rosa_roxburghii Rroxscaffold_3G00220670
rosa_rugosa Rorug07G0331200 Rorug07G0331300
rosa_samantha Rh7AG484900 Rh7BG457900 Rh7CG502100 Rh7DG470300
rosa_wichuraiana Rw7G040670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 74
AcoI YGGCCR 1 cut(s) 183
AfaI GTAC 1 cut(s) 126
AfiI CCNNNNNNNGG 1 cut(s) 539
AjnI CCWGG 1 cut(s) 415
AluBI AGCT 2 cut(s) 114, 150
AluI AGCT 2 cut(s) 114, 150
Alw21I GWGCWC 2 cut(s) 64, 573
Alw44I GTGCAC 1 cut(s) 60
AlwI GGATC 1 cut(s) 74
AoxI GGCC 1 cut(s) 183
ApaLI GTGCAC 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 262
AsuHPI GGTGA 4 cut(s) 93, 135, 447, 480
AvaII GGWCC 1 cut(s) 262
BaeGI GKGCMC 1 cut(s) 64
Bbv12I GWGCWC 2 cut(s) 64, 573
BccI CCATC 4 cut(s) 106, 203, 253, 509
BcgI CGANNNNNNTGC 2 cut(s) 334, 368
BciT130I CCWGG 1 cut(s) 417
BfaI CTAG 1 cut(s) 566
Bme1390I CCNGG 1 cut(s) 417
Bme18I GGWCC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 417
BmsI GCATC 1 cut(s) 602
BplI GAGNNNNNCTC 2 cut(s) 454, 486
BpmI CTGGAG 1 cut(s) 456
BsaWI WCCGGW 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 539
Bse1I ACTGG 2 cut(s) 273, 484
Bse3DI GCAATG 2 cut(s) 350, 407
BseBI CCWGG 1 cut(s) 417
BseGI GGATG 1 cut(s) 436
BseLI CCNNNNNNNGG 1 cut(s) 539
BseMI GCAATG 2 cut(s) 350, 407
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 2 cut(s) 273, 484
BseSI GKGCMC 1 cut(s) 64
BsgI GTGCAG 1 cut(s) 360
BshFI GGCC 1 cut(s) 185
BsiHKAI GWGCWC 2 cut(s) 64, 573
BsiSI CCGG 3 cut(s) 104, 230, 540
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 539
BsmFI GGGAC 1 cut(s) 227
BsmI GAATGC 1 cut(s) 192
BsnI GGCC 1 cut(s) 185
Bsp1286I GDGCHC 2 cut(s) 64, 573
Bsp143I GATC 2 cut(s) 12, 79
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 1 cut(s) 164
BspLI GGNNCC 1 cut(s) 108
BspPI GGATC 1 cut(s) 74
BsrDI GCAATG 2 cut(s) 350, 407
BsrI ACTGG 2 cut(s) 273, 484
BssMI GATC 2 cut(s) 12, 79
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 3 cut(s) 87, 136, 605
BstAPI GCANNNNNTGC 1 cut(s) 59
BstC8I GCNNGC 2 cut(s) 116, 584
BstDEI CTNAG 3 cut(s) 151, 389, 578
BstF5I GGATG 1 cut(s) 436
BstKTI GATC 2 cut(s) 15, 82
BstMBI GATC 2 cut(s) 12, 79
BstMWI GCNNNNNNNGC 3 cut(s) 59, 147, 536
BstNI CCWGG 1 cut(s) 417
BstNSI RCATGY 2 cut(s) 539, 586
BstSCI CCNGG 1 cut(s) 415
BstSLI GKGCMC 1 cut(s) 64
BsuRI GGCC 1 cut(s) 185
BtgZI GCGATG 2 cut(s) 222, 359
BtsCI GGATG 1 cut(s) 436
BtsI GCAGTG 1 cut(s) 525
BtsIMutI CAGTG 4 cut(s) 83, 280, 309, 525
Cac8I GCNNGC 2 cut(s) 116, 584
Cfr13I GGNCC 1 cut(s) 262
Csp6I GTAC 1 cut(s) 125
CviAII CATG 4 cut(s) 71, 431, 536, 583
CviJI RGCY 8 cut(s) 114, 141, 150, 185, 229, 272, 296, 483
CviKI_1 RGCY 8 cut(s) 114, 141, 150, 185, 229, 272, 296, 483
CviQI GTAC 1 cut(s) 125
DdeI CTNAG 3 cut(s) 151, 389, 578
DpnI GATC 2 cut(s) 14, 81
DpnII GATC 2 cut(s) 12, 79
EaeI YGGCCR 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 415
FaeI CATG 4 cut(s) 74, 434, 539, 586
FaqI GGGAC 1 cut(s) 227
FatI CATG 4 cut(s) 70, 430, 535, 582
FauNDI CATATG 1 cut(s) 287
FokI GGATG 1 cut(s) 423
FspBI CTAG 1 cut(s) 566
GsuI CTGGAG 1 cut(s) 456
HaeIII GGCC 1 cut(s) 185
HapII CCGG 3 cut(s) 104, 230, 540
Hin1II CATG 4 cut(s) 74, 434, 539, 586
HinfI GANTC 2 cut(s) 66, 463
HpaII CCGG 3 cut(s) 104, 230, 540
HphI GGTGA 4 cut(s) 93, 135, 447, 480
Hpy166II GTNNAC 1 cut(s) 62
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 1 cut(s) 473
Hpy8I GTNNAC 1 cut(s) 62
HpyAV CCTTC 3 cut(s) 227, 366, 390
HpyCH4III ACNGT 3 cut(s) 87, 136, 605
HpyCH4IV ACGT 2 cut(s) 123, 507
HpyCH4V TGCA 7 cut(s) 62, 95, 192, 285, 377, 422, 593
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 147, 536
HpyF3I CTNAG 3 cut(s) 151, 389, 578
HpySE526I ACGT 2 cut(s) 123, 507
Hsp92II CATG 4 cut(s) 74, 434, 539, 586
Kzo9I GATC 2 cut(s) 12, 79
LmnI GCTCC 1 cut(s) 535
LweI GCATC 1 cut(s) 602
MaeI CTAG 1 cut(s) 566
MaeII ACGT 2 cut(s) 123, 507
MaeIII GTNAC 4 cut(s) 161, 398, 486, 523
MalI GATC 2 cut(s) 14, 81
MboI GATC 2 cut(s) 12, 79
MhlI GDGCHC 2 cut(s) 64, 573
MluCI AATT 1 cut(s) 55
MlyI GAGTC 1 cut(s) 472
MmeI TCCRAC 2 cut(s) 234, 464
MnlI CCTC 4 cut(s) 413, 423, 438, 571
MseI TTAA 2 cut(s) 203, 616
MslI CAYNNNNRTG 1 cut(s) 314
MspI CCGG 3 cut(s) 104, 230, 540
MspR9I CCNGG 1 cut(s) 417
Mva1269I GAATGC 1 cut(s) 192
MvaI CCWGG 1 cut(s) 417
MwoI GCNNNNNNNGC 3 cut(s) 59, 147, 536
NdeI CATATG 1 cut(s) 287
NdeII GATC 2 cut(s) 12, 79
NlaIII CATG 4 cut(s) 74, 434, 539, 586
NlaIV GGNNCC 1 cut(s) 108
NmuCI GTSAC 2 cut(s) 486, 523
NspI RCATGY 2 cut(s) 539, 586
PaeI GCATGC 1 cut(s) 586
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PctI GAATGC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 66
PleI GAGTC 1 cut(s) 471
PpsI GAGTC 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 415
PspGI CCWGG 1 cut(s) 415
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 1 cut(s) 262
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
RseI CAYNNNNRTG 1 cut(s) 314
SaqAI TTAA 2 cut(s) 203, 616
Sau3AI GATC 2 cut(s) 12, 79
Sau96I GGNCC 1 cut(s) 262
SchI GAGTC 1 cut(s) 472
ScrFI CCNGG 1 cut(s) 417
SduI GDGCHC 2 cut(s) 64, 573
SetI ASST 7 cut(s) 116, 126, 152, 238, 382, 405, 510
SfaNI GCATC 1 cut(s) 602
SinI GGWCC 1 cut(s) 262
SmiMI CAYNNNNRTG 1 cut(s) 314
SphI GCATGC 1 cut(s) 586
Sse9I AATT 1 cut(s) 55
SspMI CTAG 1 cut(s) 566
StyD4I CCNGG 1 cut(s) 415
TaaI ACNGT 3 cut(s) 87, 136, 605
TaiI ACGT 2 cut(s) 126, 510
TasI AATT 1 cut(s) 55
TfiI GAWTC 1 cut(s) 66
Tru1I TTAA 2 cut(s) 203, 616
Tru9I TTAA 2 cut(s) 203, 616
TscAI CASTG 4 cut(s) 90, 280, 316, 532
TseFI GTSAC 2 cut(s) 486, 523
Tsp45I GTSAC 2 cut(s) 486, 523
TspDTI ATGAA 4 cut(s) 12, 16, 425, 600
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 4 cut(s) 90, 280, 316, 532
VneI GTGCAC 1 cut(s) 60
VpaK11BI GGWCC 1 cut(s) 262
XceI RCATGY 2 cut(s) 539, 586
XspI CTAG 1 cut(s) 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.