pycom08g17730

E3 ubiquitin-protein ligase BRE1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
17883277 .. 17888075
4799 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g17730.6

Sequence Viewer

Length: 1527 bp
ATGCTAAATGATCGACTCCAACATTGGAATGCAGAATTGGACCGATACAAAGCATTGACTGATTCTTTGCAGGCTGACAGGACTCTTGTTGTGAGAAGGGAGAAGGACCTAAATGTCAAATTAGAGTCAGCAGATGCAGTTAGGAATCCCATTGACTATTCTGATTCTAGGATTGAAGAACTAGAACTTCAGCTGCAGAAGTGTATAATTGCAAAATATGACTTTGAGATAAACATGGAAGAAGCTGTCCAGGATTCAGGAAGAAAGGACATTATAGAAGAGTTTCATTTGATGGCCTCATCTTTGTGTAAAGAAATGGAAATGGTGGAAACTCAGTTGAAGCAGTGGAAGGAAACAGCTCATGAAACACTTTGTTTACGTGACAAAGCCCAATCATTGAAAGCTTCATTAAGTACAAAGACAAATGAGCAAAAGATCCTTGGGGACAAGTGTGGTGAACAGGTGATAGAGATAAAGTCTCTTAAGGCATTGAGACTTGATGGAAATCAAAGAATCAGAACGGTGAACGCAGCCAATGAAGCAGAAGCTGCTTGTCAGCAAAGGCTTTCTGCTACCGAGGCTGAAATAACTGAATTAAGTGCCAAACTTGATGCATCAGAGCGGGATGTTATGGTGCTTACTGAGGCTATTGGAATTAAAGACAAGGAGGCAGAGGCTTATATATCTGAAATTGAGACCGTTGGTCAGGCATATGAAGATATGCAGATGCAAAATCAGCATCTGTTGCAGCAGGTGACTGAGAGGGATGACTACAATATCAAGGTCTCTGTTAAGATTTTTGTTGCCTTCTTCCCACCACATTATTACCAAATTTATTGGTGCGGTGGAATGGTGGCTCATTGTCCTTGGTTTTTAAATGATGTCTTTGGTCTCGTTTCTGAGAGTGTGAAGACAAAGCAAGCACAGAGCTTTGTACTCTCTGATAAGCAGGCATTGGTGAAGCAACTTCAACAAGTAAACACATCATTAGAATCTCTAAAAATTAGAGTTTCCCATGGTGAAGAGCAGATGAAGGCTCTCCTGACAGATGCCATAAAAACTACTGCGGAAGATAGGCAACTCGCAGTCAACGTGGAAACTGTCAAGTGGGAATTGGCTGATTCTGAGAAGGAGTTGCAGTGGTTGAAATCTGCCTTTGCATCTTCTGAGAAGGAACATGTGCATATTGAAAAGGATATTGATGACGTCCGATTGGAATTAGACAATGAAAGAAGCTCAAGGAAGAACCTTGAGGAAGAACTCGGGGAATTGAACAGCATAGTTGCTGAGATGAGTTCTGAAACCGGAGAGGCTGCAATACAGAAACTCCAAACTGAAATAAAATTCTGCAAAAATATTTTGCAGTGCAGTGTTTGTACTGATAGGCCGAAGGAGGTGGTAATCGTCAAGTGCTATCATCTATTTTGCAATTACTGCGTTCAAAGAAATCTAGAGATACGTCATCGAAAGTGTCCTGCCTGTGGAACTCCGTTTGGTCAAAATGACATCCGGTTTGTAAAGATATGA

Protein Analysis

509

Amino Acids

58.21

Weight (kDa)

5.16

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 742
AasI GACNNNNNNGTC 1 cut(s) 113
AatII GACGTC 1 cut(s) 1209
Acc36I ACCTGC 1 cut(s) 742
AccBSI CCGCTC 1 cut(s) 622
AciI CCGC 3 cut(s) 622, 843, 1067
AclWI GGATC 1 cut(s) 430
AcsI RAATTY 2 cut(s) 831, 1343
AcuI CTGAAG 1 cut(s) 173
AcyI GRCGYC 1 cut(s) 1206
AfaI GTAC 3 cut(s) 415, 936, 1378
AfiI CCNNNNNNNGG 1 cut(s) 1481
AflII CTTAAG 1 cut(s) 482
AflIII ACRYGT 1 cut(s) 1177
AgsI TTSAA 8 cut(s) 176, 340, 400, 971, 1147, 1190, 1273, 1442
AhdI GACNNNNNGTC 1 cut(s) 702
AjnI CCWGG 1 cut(s) 249
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
AluBI AGCT 7 cut(s) 193, 245, 359, 404, 548, 930, 1236
AluI AGCT 7 cut(s) 193, 245, 359, 404, 548, 930, 1236
Alw26I GTCTC 5 cut(s) 483, 487, 689, 790, 896
AlwI GGATC 1 cut(s) 430
AlwNI CAGNNNCTG 2 cut(s) 548, 742
Ama87I CYCGRG 1 cut(s) 1262
AoxI GGCC 2 cut(s) 294, 1385
ApeKI GCWGC 5 cut(s) 193, 530, 548, 748, 1313
ApoI RAATTY 2 cut(s) 831, 1343
ArsI GACNNNNNNTTYG 3 cut(s) 49, 81, 1496
Asp700I GAANNNNTTC 1 cut(s) 282
AspS9I GGNCC 2 cut(s) 40, 106
AsuHPI GGTGA 6 cut(s) 467, 475, 535, 766, 970, 1031
AvaI CYCGRG 1 cut(s) 1262
AvaII GGWCC 2 cut(s) 40, 106
BbsI GAAGAC 1 cut(s) 917
BbvI GCAGC 5 cut(s) 180, 535, 542, 760, 1300
BccI CCATC 2 cut(s) 286, 494
BciT130I CCWGG 1 cut(s) 251
BcoDI GTCTC 5 cut(s) 483, 487, 689, 790, 896
BfaI CTAG 3 cut(s) 168, 182, 1451
BfmI CTRYAG 1 cut(s) 194
BfrI CTTAAG 1 cut(s) 482
BfuAI ACCTGC 1 cut(s) 742
BisI GCNGC 5 cut(s) 194, 531, 549, 749, 1314
BlsI GCNGC 5 cut(s) 195, 532, 550, 750, 1315
Bme1390I CCNGG 1 cut(s) 251
Bme18I GGWCC 2 cut(s) 40, 106
BmeRI GACNNNNNGTC 1 cut(s) 702
BmeT110I CYCGRG 1 cut(s) 1262
BmgT120I GGNCC 2 cut(s) 40, 106
BmrFI CCNGG 1 cut(s) 251
BmsI GCATC 7 cut(s) 124, 601, 623, 717, 748, 1039, 1169
BpiI GAAGAC 1 cut(s) 917
BpuEI CTTGAG 2 cut(s) 1222, 1271
BsaAI YACGTR 1 cut(s) 380
BsaBI GATNNNNATC 1 cut(s) 504
BsaHI GRCGYC 1 cut(s) 1206
BsaI GGTCTC 3 cut(s) 689, 790, 896
BsaJI CCNNGG 4 cut(s) 439, 576, 866, 1015
BsaWI WCCGGW 2 cut(s) 1304, 1509
BsaXI ACNNNNNCTCC 4 cut(s) 1124, 1154, 1311, 1341
Bsc4I CCNNNNNNNGG 1 cut(s) 1481
Bse8I GATNNNNATC 1 cut(s) 504
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 4 cut(s) 439, 576, 866, 1015
BseGI GGATG 3 cut(s) 631, 772, 1506
BseJI GATNNNNATC 1 cut(s) 504
BseLI CCNNNNNNNGG 1 cut(s) 1481
BseMII CTCAG 7 cut(s) 347, 633, 750, 891, 1116, 1158, 1278
BseXI GCAGC 5 cut(s) 180, 535, 542, 760, 1300
BsgI GTGCAG 1 cut(s) 1387
BshFI GGCC 2 cut(s) 296, 1387
BsiHKCI CYCGRG 1 cut(s) 1262
BsiSI CCGG 2 cut(s) 1305, 1510
BslFI GGGAC 1 cut(s) 458
BslI CCNNNNNNNGG 1 cut(s) 1481
BsmAI GTCTC 5 cut(s) 483, 487, 689, 790, 896
BsmFI GGGAC 1 cut(s) 458
BsmI GAATGC 1 cut(s) 34
BsnI GGCC 2 cut(s) 296, 1387
Bso31I GGTCTC 3 cut(s) 689, 790, 896
BsoBI CYCGRG 1 cut(s) 1262
Bsp143I GATC 2 cut(s) 10, 435
Bsp19I CCATGG 1 cut(s) 1015
BspACI CCGC 3 cut(s) 622, 843, 1067
BspANI GGCC 2 cut(s) 296, 1387
BspCNI CTCAG 7 cut(s) 346, 634, 751, 892, 1117, 1159, 1279
BspHI TCATGA 1 cut(s) 361
BspMAI CTGCAG 1 cut(s) 198
BspMI ACCTGC 1 cut(s) 742
BspPI GGATC 1 cut(s) 430
BspQI GCTCTTC 1 cut(s) 1017
BspTI CTTAAG 1 cut(s) 482
BspTNI GGTCTC 3 cut(s) 689, 790, 896
BsrBI CCGCTC 1 cut(s) 622
BssECI CCNNGG 4 cut(s) 439, 576, 866, 1015
BssMI GATC 2 cut(s) 10, 435
BssNI GRCGYC 1 cut(s) 1206
BssT1I CCWWGG 3 cut(s) 439, 866, 1015
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 3 cut(s) 523, 700, 1102
Bst6I CTCTTC 2 cut(s) 273, 1017
BstACI GRCGYC 1 cut(s) 1206
BstAFI CTTAAG 1 cut(s) 482
BstAPI GCANNNNNTGC 3 cut(s) 548, 745, 1434
BstBAI YACGTR 1 cut(s) 380
BstC8I GCNNGC 3 cut(s) 72, 921, 951
BstDEI CTNAG 7 cut(s) 333, 642, 759, 900, 1125, 1167, 1287
BstDSI CCRYGG 1 cut(s) 1015
BstF5I GGATG 3 cut(s) 631, 772, 1506
BstKTI GATC 2 cut(s) 13, 438
BstMAI GTCTC 5 cut(s) 483, 487, 689, 790, 896
BstMBI GATC 2 cut(s) 10, 435
BstMWI GCNNNNNNNGC 6 cut(s) 539, 548, 578, 736, 745, 1434
BstNI CCWGG 1 cut(s) 251
BstNSI RCATGY 1 cut(s) 1181
BstSCI CCNGG 1 cut(s) 249
BstSFI CTRYAG 1 cut(s) 194
BstV1I GCAGC 5 cut(s) 180, 535, 542, 760, 1300
BstV2I GAAGAC 1 cut(s) 917
BstX2I RGATCY 1 cut(s) 435
BstYI RGATCY 1 cut(s) 435
BsuRI GGCC 2 cut(s) 296, 1387
BtgI CCRYGG 1 cut(s) 1015
BtsCI GGATG 3 cut(s) 631, 772, 1506
BtsI GCAGTG 4 cut(s) 350, 1145, 1370, 1375
BtsIMutI CAGTG 4 cut(s) 350, 1145, 1370, 1375
BveI ACCTGC 1 cut(s) 742
Cac8I GCNNGC 3 cut(s) 72, 921, 951
CaiI CAGNNNCTG 2 cut(s) 548, 742
CciI TCATGA 1 cut(s) 361
Cfr13I GGNCC 2 cut(s) 40, 106
Csp6I GTAC 3 cut(s) 414, 935, 1377
CviAII CATG 4 cut(s) 235, 362, 1016, 1178
CviQI GTAC 3 cut(s) 414, 935, 1377
DdeI CTNAG 7 cut(s) 333, 642, 759, 900, 1125, 1167, 1287
DpnI GATC 2 cut(s) 12, 437
DpnII GATC 2 cut(s) 10, 435
DraI TTTAAA 1 cut(s) 876
DrdI GACNNNNNNGTC 1 cut(s) 113
DriI GACNNNNNGTC 1 cut(s) 702
DseDI GACNNNNNNGTC 1 cut(s) 113
Eam1104I CTCTTC 2 cut(s) 273, 1017
Eam1105I GACNNNNNGTC 1 cut(s) 702
EarI CTCTTC 2 cut(s) 273, 1017
Eco130I CCWWGG 3 cut(s) 439, 866, 1015
Eco31I GGTCTC 3 cut(s) 689, 790, 896
Eco47I GGWCC 2 cut(s) 40, 106
Eco57I CTGAAG 1 cut(s) 173
Eco88I CYCGRG 1 cut(s) 1262
EcoO109I RGGNCCY 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 249
EcoT14I CCWWGG 3 cut(s) 439, 866, 1015
EcoT22I ATGCAT 1 cut(s) 616
ErhI CCWWGG 3 cut(s) 439, 866, 1015
FaeI CATG 4 cut(s) 238, 365, 1019, 1181
FaqI GGGAC 1 cut(s) 458
FatI CATG 4 cut(s) 234, 361, 1015, 1177
FauI CCCGC 1 cut(s) 615
FauNDI CATATG 1 cut(s) 712
Fnu4HI GCNGC 5 cut(s) 194, 531, 549, 749, 1314
FokI GGATG 3 cut(s) 638, 779, 1493
Fsp4HI GCNGC 5 cut(s) 194, 531, 549, 749, 1314
FspBI CTAG 3 cut(s) 168, 182, 1451
GluI GCNGC 5 cut(s) 194, 531, 549, 749, 1314
HaeIII GGCC 2 cut(s) 296, 1387
HapII CCGG 2 cut(s) 1305, 1510
Hin1I GRCGYC 1 cut(s) 1206
Hin1II CATG 4 cut(s) 238, 365, 1019, 1181
HincII GTYRAC 1 cut(s) 1090
HindII GTYRAC 1 cut(s) 1090
HindIII AAGCTT 1 cut(s) 402
HpaII CCGG 2 cut(s) 1305, 1510
HphI GGTGA 6 cut(s) 467, 475, 535, 766, 970, 1031
Hpy166II GTNNAC 5 cut(s) 377, 458, 526, 979, 1090
Hpy188III TCNNGA 4 cut(s) 258, 362, 1042, 1451
Hpy8I GTNNAC 5 cut(s) 377, 458, 526, 979, 1090
HpyAV CCTTC 8 cut(s) 90, 97, 343, 817, 1027, 1123, 1165, 1384
HpyCH4III ACNGT 3 cut(s) 523, 700, 1102
HpyCH4IV ACGT 4 cut(s) 379, 1092, 1206, 1459
HpyF10VI GCNNNNNNNGC 6 cut(s) 539, 548, 578, 736, 745, 1434
HpyF3I CTNAG 7 cut(s) 333, 642, 759, 900, 1125, 1167, 1287
HpySE526I ACGT 4 cut(s) 379, 1092, 1206, 1459
Hsp92I GRCGYC 1 cut(s) 1206
Hsp92II CATG 4 cut(s) 238, 365, 1019, 1181
Kzo9I GATC 2 cut(s) 10, 435
LguI GCTCTTC 1 cut(s) 1017
Lsp1109I GCAGC 5 cut(s) 180, 535, 542, 760, 1300
LweI GCATC 7 cut(s) 124, 601, 623, 717, 748, 1039, 1169
MaeI CTAG 3 cut(s) 168, 182, 1451
MaeII ACGT 4 cut(s) 379, 1092, 1206, 1459
MaeIII GTNAC 2 cut(s) 380, 754
MalI GATC 2 cut(s) 12, 437
MbiI CCGCTC 1 cut(s) 622
MboI GATC 2 cut(s) 10, 435
MflI RGATCY 1 cut(s) 435
MlyI GAGTC 3 cut(s) 9, 76, 134
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 9 cut(s) 307, 571, 637, 661, 667, 756, 1246, 1303, 1387
Mph1103I ATGCAT 1 cut(s) 616
MroXI GAANNNNTTC 1 cut(s) 282
MseI TTAA 6 cut(s) 410, 483, 596, 657, 792, 875
MslI CAYNNNNRTG 2 cut(s) 27, 304
MspA1I CMGCKG 1 cut(s) 193
MspCI CTTAAG 1 cut(s) 482
MspI CCGG 2 cut(s) 1305, 1510
MspR9I CCNGG 1 cut(s) 251
Mva1269I GAATGC 1 cut(s) 34
MvaI CCWGG 1 cut(s) 251
MwoI GCNNNNNNNGC 6 cut(s) 539, 548, 578, 736, 745, 1434
NcoI CCATGG 1 cut(s) 1015
NdeI CATATG 1 cut(s) 712
NdeII GATC 2 cut(s) 10, 435
NlaIII CATG 4 cut(s) 238, 365, 1019, 1181
NmuCI GTSAC 2 cut(s) 380, 754
NsiI ATGCAT 1 cut(s) 616
NspI RCATGY 1 cut(s) 1181
PagI TCATGA 1 cut(s) 361
PaqCI CACCTGC 1 cut(s) 742
PciI ACATGT 1 cut(s) 1177
PciSI GCTCTTC 1 cut(s) 1017
PcsI WCGNNNNNNNCGW 1 cut(s) 1089
PctI GAATGC 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 282
PfeI GAWTC 7 cut(s) 62, 145, 164, 254, 513, 992, 1121
PfoI TCCNGGA 1 cut(s) 249
PkrI GCNGC 5 cut(s) 195, 532, 550, 750, 1315
PleI GAGTC 3 cut(s) 9, 76, 133
PpsI GAGTC 3 cut(s) 9, 76, 133
Ppu21I YACGTR 1 cut(s) 380
PpuMI RGGWCCY 1 cut(s) 106
PscI ACATGT 1 cut(s) 1177
Psp5II RGGWCCY 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PspPI GGNCC 2 cut(s) 40, 106
PspPPI RGGWCCY 1 cut(s) 106
PstI CTGCAG 1 cut(s) 198
PstNI CAGNNNCTG 2 cut(s) 548, 742
PsuI RGATCY 1 cut(s) 435
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 3 cut(s) 415, 936, 1378
RsaNI GTAC 3 cut(s) 414, 935, 1377
RseI CAYNNNNRTG 2 cut(s) 27, 304
SapI GCTCTTC 1 cut(s) 1017
SaqAI TTAA 6 cut(s) 410, 483, 596, 657, 792, 875
SatI GCNGC 5 cut(s) 194, 531, 549, 749, 1314
Sau3AI GATC 2 cut(s) 10, 435
Sau96I GGNCC 2 cut(s) 40, 106
SchI GAGTC 3 cut(s) 9, 76, 134
ScrFI CCNGG 1 cut(s) 251
SfaNI GCATC 7 cut(s) 124, 601, 623, 717, 748, 1039, 1169
SfcI CTRYAG 1 cut(s) 194
SinI GGWCC 2 cut(s) 40, 106
SmiMI CAYNNNNRTG 2 cut(s) 27, 304
SmlI CTYRAG 3 cut(s) 482, 1237, 1250
SmoI CTYRAG 3 cut(s) 482, 1237, 1250
SsiI CCGC 3 cut(s) 622, 843, 1067
SspI AATATT 1 cut(s) 1357
SspMI CTAG 3 cut(s) 168, 182, 1451
StyD4I CCNGG 1 cut(s) 249
StyI CCWWGG 3 cut(s) 439, 866, 1015
TaaI ACNGT 3 cut(s) 523, 700, 1102
TaiI ACGT 4 cut(s) 382, 1095, 1209, 1462
TaqI TCGA 2 cut(s) 13, 1465
TaqII GACCGA 1 cut(s) 57
TatI WGTACW 3 cut(s) 413, 934, 1376
TfiI GAWTC 7 cut(s) 62, 145, 164, 254, 513, 992, 1121
Tru1I TTAA 6 cut(s) 410, 483, 596, 657, 792, 875
Tru9I TTAA 6 cut(s) 410, 483, 596, 657, 792, 875
TscAI CASTG 4 cut(s) 350, 1145, 1370, 1375
TseFI GTSAC 2 cut(s) 380, 754
TseI GCWGC 5 cut(s) 193, 530, 548, 748, 1313
Tsp45I GTSAC 2 cut(s) 380, 754
TspDTI ATGAA 7 cut(s) 275, 378, 396, 552, 729, 1046, 1242
TspGWI ACGGA 1 cut(s) 1479
TspRI CASTG 4 cut(s) 350, 1145, 1370, 1375
Vha464I CTTAAG 1 cut(s) 482
VpaK11BI GGWCC 2 cut(s) 40, 106
XapI RAATTY 2 cut(s) 831, 1343
XbaI TCTAGA 1 cut(s) 1450
XceI RCATGY 1 cut(s) 1181
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 3 cut(s) 168, 182, 1451
ZraI GACGTC 1 cut(s) 1207
Zsp2I ATGCAT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.