Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004358

Physical Location & Seq

Genomic Coordinates Forward (+)

85238427 .. 85245783

Gene Structure 7357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G049140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2598 bp

ATGGAAAACAATTCAGACTCGGATGAGCCAGAGAAGAAGAGACCTCATTTGAATTCGTTCTCGTCCGCCATGGCCCGAAGCTCCAACCCCTCGCCACCCAATGACCACCATAACGTTGATGCCGCAGTTCTCCAGTACCAGAACCAGATGATGCTTCAGCAGATAGACAAACAGAAGCATGAATTGCAAGATCTTGAAGCAAACATCAAAGAACTGAAGGCGAAGCAAGGTTCTTATGATGACATGCTAATTGCGGTGAATCAGCTGTGGAATCAGTTAGTTGGCGATGTAGCCCTTCTTGGAGTATGCGCTGGAGCAGGCCAAAATGCGTTGCAAGTTTTGGATTCTGCTGATTATTCTCGCGGTTCAATTCCGTCATGCCCTGCGGAGGAGATGTTTCTTTGTAGAATCCTACAAAGAGACGCTATAGAAGCTAACAGCGTTGATGAAGTTGTTAACTATGTTGAAGAATCTCTCACTTTGCGTCATACATCAACTAGGGAGTTGATGAAACTCTTGGAACATACAATTAATGTTGAGAGGGAAAAAACGGAGAACATAGCCCGTACTTTGAATGGAAAGATATCTTCAGAAGATGCTATTATCGAATTGTCCAAGATTGATGATATGATTGAAAAGGAGGCCAACAATCTACGTCAAGTGATTGATATCCTTCATTTGAAGCATAAAGAGTATGCTGATGTCATTCACACTCGCGCTAGTAGCGATTCAACAGATCAGTCTGAAATTAGACGAATTACAGGTGATCTCGATGACAGCATGGCTGAACTAGAGGAGAGTAGGAGAAAACTAGTCAATCTAAAAATGCAAAAGGATGTTGCATCTGGGATGCATAACCTTACTTCTGGTGCCGTGAATGGGACTTTGTCACCTGAAAAATCAACAGAAAGGACAATAAGCTTGCAGGAACTTAAAACTTCAATTGAGGAAACAAAGCCGCCTTCTGAATTTCAAGAAGCACAGAAAGAAAATCTAGCATTGTCAAAGCAATTGCAAGACTTTCAGAATGAAGTGAAGGATGAAAAATATGTACACTCATCTAGACTGTACACTATGCTAAATGATCAACTCCAGCATTGGAATGCTGAAGTGGAGAGATACAAATCATTGACTGGTTCTTTACAGGCTGACAGGGCTGTTGTCATGAGAAGGGAGAAGGAGTTAAATCTCAAACTAGAGTCAGCAGAGGCATTCAGGACCATAAATGAAAATGACTCTAGGATTGAGGAACTAGAGCTCCAGCTGCAGAAGTGCTTAATTGAAAAAAATGACTTAGAGATAAGCATGGAGGCAGCTGTTCAGGATTCAGGAAGAAAGGACATTACATCAGAGTTCCATGTGATGTCCTCATCTTTGTCGAAAGAGATGGAAATGATGGAAACTCAGTTGAAGCAGTGGAAGGAAACGGCTCACGGAACACTTTCCTTGCGTGAGAAATCCCAGTCTTTAAAAGCTTCATTAAGTACGAAGACAAATGAGCGGAACAGCTTAGCAAACAAATGTGCTGAACAGATGACAGAGATCAAGTCTCTCAAGGAATTGATTGAGAAGTTGCAGAAGGAGAAACTGGAACTTCAGATCTTCTTGGACTTGTACGCTCAGGAAAGCTACGTAAACAGAGACTTGTTGGAAATCAAAGAATCAGAACGCAGAGCTCACTCCCAAGCCGCTATGTTCAAAAATGCATTAGATGAACATAGTCTAGAGTTGAGGGTAAAAGCAGCCAATGAAGCTGAAGCTGCTTGTCAGCAAAGGCTTGCAGCCACTGAAGCTGAAATAACTGAATCAAGGGCCAAACTTGATGCATCTGAGAGGGATGTTCTGGAGCTTACCGAAGCTATTAAAATTAAAGACAAGGAGGCAGAGGCTTATATATCTGAAATTGAGACCATTGGTCAGGCATATGAAGATATGCAGACACAAAACCAGCATCTGTTGCAGCAGGTGACTGAGAGGGATGAATATAATATCAAGCTTAACTTTCTACTTTCAGAGAAGCAGGCATTGGCAAAACAACTTCAACAAGTAAATACATCAGTAGAATCTCTGAAAATGAGAATTTCTCAAGATGAAGAGCAGATGAAGGCTGTCTTAACAGAAGCCTTGAAATCTACCGAGGAAGACAGACACCTTTCAGTCAATCTAGAAGCTGGAAAATGGGAACTGGCTGATTCTGAGAAGGAGTTGCAGTGGCTTAAATATGCTGTTGCTTCTTCTGAAAAGGAATATGCACGTATTAAACAGGATATTGAGGATATCCAATTGGAATTAGACAACGAGAGGAGCTCGAGGAAGAATATTGAGGAAGAACTATGGGAATTAAACAGCAGGGTTGTTGAGATGAGTTCTGAAACTGGAGAGGCTGCAATACAGAAACTCCAATCAGAAATCAAATTCTATAAGAACATTTTGCAGTGTAGTGTTTGTACTGACAGACCGAAGGAGGTGGTAATTGTGAAGTGCTTTCATCTATTTTGCAATTATTGCGTTCAAAAGAATTTAGAGATCCGTCACCGAAAGTGTCCTGCTTGTGGAACTCCGTTCGGTCAGAGTGACATACGCTTTGTAAAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006513 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009965 GO:0009987 GO:0010016 GO:0010154 GO:0010162 GO:0010228 GO:0010390 GO:0010431 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0019538 GO:0021700 GO:0022414 GO:0022611 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033523 GO:0036211 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051276 GO:0061458 GO:0070647 GO:0071695 GO:0071704 GO:0071840 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

865

Amino Acids

99.0

Weight (kDa)

5.05

Isoelectric Point (pI)

59.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	811 - 855	4.4e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	812 - 851	7.6e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	813 - 851	2.2e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55250 AT1G55250 AT1G55250 AT1G55250 AT1G55250
fragaria_vesca	FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811
malus_domestica	MD08G1205100.v1.1 MD15G1388900.v1.1
prunus_persica	Prupe.1G537100_v2.0.a1
pyrus_communis	pycom08g17730 pycom15g34870
rosa_chinensis	RchiOBHm_Chr5g0081511
rosa_laevigata	RLG00000036943
rosa_multiflora	Rmu_sc0007702.1_g000003
rosa_roxburghii	Rroxscaffold_1G00002040
rosa_rugosa	Rorug05G0476800
rosa_samantha	Rh5AG528300 Rh5BG553000 Rh5CG575900 Rh5DG563100
rosa_wichuraiana	Rw5G049140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1954
Acc36I	ACCTGC	1 cut(s)	1954
AccB1I	GGYRCC	1 cut(s)	869
AccBSI	CCGCTC	1 cut(s)	1501
AccII	CGCG	2 cut(s)	363, 717
AciI	CCGC	8 cut(s)	66, 123, 254, 363, 386, 959, 1501, 1689
AclI	AACGTT	1 cut(s)	114
AclWI	GGATC	1 cut(s)	2521
AcsI	RAATTY	5 cut(s)	52, 968, 2079, 2414, 2518
AcuI	CTGAAG	7 cut(s)	140, 236, 573, 1128, 1580, 1776, 1809
AfaI	GTAC	7 cut(s)	137, 568, 1053, 1070, 1486, 1616, 2449
AfiI	CCNNNNNNNGG	3 cut(s)	388, 879, 2552
AhdI	GACNNNNNGTC	1 cut(s)	1914
AhlI	ACTAGT	1 cut(s)	811
AjuI	GAANNNNNNNTTGG	2 cut(s)	2009, 2041
AloI	GAACNNNNNNTCC	2 cut(s)	1242, 1274
Alw21I	GWGCWC	3 cut(s)	1260, 1678, 2309
Alw26I	GTCTC	5 cut(s)	34, 414, 1554, 1635, 1901
AlwI	GGATC	1 cut(s)	2521
AlwNI	CAGNNNCTG	2 cut(s)	1787, 1954
Ama87I	CYCGRG	1 cut(s)	2308
AoxI	GGCC	4 cut(s)	72, 319, 642, 1812
ApeKI	GCWGC	7 cut(s)	1264, 1313, 1742, 1760, 1781, 1960, 2384
ApoI	RAATTY	5 cut(s)	52, 968, 2079, 2414, 2518
ArsI	GACNNNNNNTTYG	1 cut(s)	2567
AseI	ATTAAT	1 cut(s)	531
Asp700I	GAANNNNTTC	2 cut(s)	56, 1441
AspLEI	GCGC	2 cut(s)	311, 719
AspS9I	GGNCC	3 cut(s)	73, 1218, 1812
AsuHPI	GGTGA	5 cut(s)	268, 776, 882, 1978, 2525
AvaI	CYCGRG	1 cut(s)	2308
AvaII	GGWCC	1 cut(s)	1218
BanI	GGYRCC	1 cut(s)	869
BanII	GRGCYC	3 cut(s)	1260, 1678, 2309
BbsI	GAAGAC	2 cut(s)	1496, 2148
Bbv12I	GWGCWC	3 cut(s)	1260, 1678, 2309
BbvI	GCAGC	7 cut(s)	1251, 1325, 1747, 1754, 1793, 1972, 2371
BccI	CCATC	2 cut(s)	1381, 1390
BceAI	ACGGC	2 cut(s)	857, 1443
BclI	TGATCA	1 cut(s)	1084
BcoDI	GTCTC	5 cut(s)	34, 414, 1554, 1635, 1901
BcuI	ACTAGT	1 cut(s)	811
BfmI	CTRYAG	2 cut(s)	426, 1265
BfuAI	ACCTGC	1 cut(s)	1954
BglII	AGATCT	2 cut(s)	190, 1599
BlpI	GCTNAGC	1 cut(s)	1510
Bme18I	GGWCC	1 cut(s)	1218
BmeRI	GACNNNNNGTC	1 cut(s)	1914
BmeT110I	CYCGRG	1 cut(s)	2308
BmgT120I	GGNCC	3 cut(s)	73, 1218, 1812
BmiI	GGNNCC	1 cut(s)	871
BmrI	ACTGGG	1 cut(s)	1456
BmsI	GCATC	8 cut(s)	109, 141, 586, 840, 851, 1813, 1835, 1960
BmuI	ACTGGG	1 cut(s)	1456
BpiI	GAAGAC	2 cut(s)	1496, 2148
BplI	GAGNNNNNCTC	4 cut(s)	2068, 2100, 2291, 2323
BpmI	CTGGAG	6 cut(s)	116, 333, 1076, 1244, 1865, 2397
Bpu10I	CCTNAGC	1 cut(s)	1620
Bpu1102I	GCTNAGC	1 cut(s)	1510
BpuEI	CTTGAG	2 cut(s)	1538, 2070
BsaAI	YACGTR	2 cut(s)	1633, 2255
BsaBI	GATNNNNATC	2 cut(s)	668, 1123
BsaI	GGTCTC	2 cut(s)	34, 1901
BsaJI	CCNNGG	2 cut(s)	69, 2136
Bsc4I	CCNNNNNNNGG	3 cut(s)	388, 879, 2552
Bse1I	ACTGG	6 cut(s)	133, 1138, 1462, 1593, 2190, 2380
Bse8I	GATNNNNATC	2 cut(s)	668, 1123
BseDI	CCNNGG	2 cut(s)	69, 2136
BseGI	GGATG	6 cut(s)	28, 841, 855, 1045, 1843, 1984
BseJI	GATNNNNATC	2 cut(s)	668, 1123
BseLI	CCNNNNNNNGG	3 cut(s)	388, 879, 2552
BseMII	CTCAG	5 cut(s)	1418, 1634, 1821, 1962, 2187
BseNI	ACTGG	6 cut(s)	133, 1138, 1462, 1593, 2190, 2380
BseRI	GAGGAG	3 cut(s)	404, 809, 2317
BseXI	GCAGC	7 cut(s)	1251, 1325, 1747, 1754, 1793, 1972, 2371
Bsh1236I	CGCG	2 cut(s)	363, 717
BshFI	GGCC	4 cut(s)	74, 321, 644, 1814
BshNI	GGYRCC	1 cut(s)	869
BsiHKAI	GWGCWC	3 cut(s)	1260, 1678, 2309
BsiHKCI	CYCGRG	1 cut(s)	2308
BslFI	GGGAC	1 cut(s)	895
BslI	CCNNNNNNNGG	3 cut(s)	388, 879, 2552
BsmAI	GTCTC	5 cut(s)	34, 414, 1554, 1635, 1901
BsmBI	CGTCTC	1 cut(s)	414
BsmFI	GGGAC	1 cut(s)	895
BsmI	GAATGC	2 cut(s)	1108, 1211
BsnI	GGCC	4 cut(s)	74, 321, 644, 1814
Bso31I	GGTCTC	2 cut(s)	34, 1901
BsoBI	CYCGRG	1 cut(s)	2308
Bsp1286I	GDGCHC	3 cut(s)	1260, 1678, 2309
Bsp1407I	TGTACA	2 cut(s)	1051, 1068
Bsp143I	GATC	7 cut(s)	190, 736, 766, 1084, 1542, 1599, 2526
Bsp1720I	GCTNAGC	1 cut(s)	1510
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	8 cut(s)	66, 123, 254, 363, 386, 959, 1501, 1689
BspANI	GGCC	4 cut(s)	74, 321, 644, 1814
BspCNI	CTCAG	5 cut(s)	1417, 1633, 1822, 1963, 2188
BspFNI	CGCG	2 cut(s)	363, 717
BspHI	TCATGA	1 cut(s)	1164
BspLI	GGNNCC	1 cut(s)	871
BspMAI	CTGCAG	1 cut(s)	1269
BspMI	ACCTGC	1 cut(s)	1954
BspPI	GGATC	1 cut(s)	2521
BspQI	GCTCTTC	1 cut(s)	2088
BspT107I	GGYRCC	1 cut(s)	869
BspTNI	GGTCTC	2 cut(s)	34, 1901
BsrBI	CCGCTC	1 cut(s)	1501
BsrGI	TGTACA	2 cut(s)	1051, 1068
BsrI	ACTGG	6 cut(s)	133, 1138, 1462, 1593, 2190, 2380
BssECI	CCNNGG	2 cut(s)	69, 2136
BssMI	GATC	7 cut(s)	190, 736, 766, 1084, 1542, 1599, 2526
BssT1I	CCWWGG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	1068
Bst6I	CTCTTC	2 cut(s)	32, 2088
BstAPI	GCANNNNNTGC	3 cut(s)	184, 1957, 2505
BstAUI	TGTACA	2 cut(s)	1051, 1068
BstBAI	YACGTR	2 cut(s)	1633, 2255
BstC8I	GCNNGC	4 cut(s)	319, 923, 1779, 2022
BstDEI	CTNAG	7 cut(s)	1294, 1404, 1510, 1620, 1830, 1971, 2196
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	6 cut(s)	28, 841, 855, 1045, 1843, 1984
BstFNI	CGCG	2 cut(s)	363, 717
BstHHI	GCGC	2 cut(s)	311, 719
BstKTI	GATC	7 cut(s)	193, 739, 769, 1087, 1545, 1602, 2529
BstMAI	GTCTC	5 cut(s)	34, 414, 1554, 1635, 1901
BstMBI	GATC	7 cut(s)	190, 736, 766, 1084, 1542, 1599, 2526
BstNSI	RCATGY	1 cut(s)	247
BstSFI	CTRYAG	2 cut(s)	426, 1265
BstSNI	TACGTA	1 cut(s)	1633
BstUI	CGCG	2 cut(s)	363, 717
BstV1I	GCAGC	7 cut(s)	1251, 1325, 1747, 1754, 1793, 1972, 2371
BstV2I	GAAGAC	2 cut(s)	1496, 2148
BstX2I	RGATCY	3 cut(s)	190, 1599, 2526
BstYI	RGATCY	3 cut(s)	190, 1599, 2526
BsuRI	GGCC	4 cut(s)	74, 321, 644, 1814
BtgI	CCRYGG	1 cut(s)	69
BtgZI	GCGATG	1 cut(s)	300
BtsCI	GGATG	6 cut(s)	28, 841, 855, 1045, 1843, 1984
BtsI	GCAGTG	3 cut(s)	1421, 2216, 2441
BtsIMutI	CAGTG	4 cut(s)	1421, 1785, 2216, 2441
BveI	ACCTGC	1 cut(s)	1954
Cac8I	GCNNGC	4 cut(s)	319, 923, 1779, 2022
CaiI	CAGNNNCTG	2 cut(s)	1787, 1954
CciI	TCATGA	1 cut(s)	1164
CfoI	GCGC	2 cut(s)	311, 719
Cfr13I	GGNCC	3 cut(s)	73, 1218, 1812
CseI	GACGC	2 cut(s)	431, 473
Csp6I	GTAC	7 cut(s)	136, 567, 1052, 1069, 1485, 1615, 2448
CviAII	CATG	8 cut(s)	70, 179, 244, 378, 781, 1165, 1306, 1358
CviQI	GTAC	7 cut(s)	136, 567, 1052, 1069, 1485, 1615, 2448
DdeI	CTNAG	7 cut(s)	1294, 1404, 1510, 1620, 1830, 1971, 2196
DpnI	GATC	7 cut(s)	192, 738, 768, 1086, 1544, 1601, 2528
DpnII	GATC	7 cut(s)	190, 736, 766, 1084, 1542, 1599, 2526
DraI	TTTAAA	1 cut(s)	1470
DriI	GACNNNNNGTC	1 cut(s)	1914
Eam1104I	CTCTTC	2 cut(s)	32, 2088
Eam1105I	GACNNNNNGTC	1 cut(s)	1914
EarI	CTCTTC	2 cut(s)	32, 2088
EciI	GGCGGA	1 cut(s)	55
Ecl136II	GAGCTC	3 cut(s)	1258, 1676, 2307
Eco105I	TACGTA	1 cut(s)	1633
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	3 cut(s)	1260, 1678, 2309
Eco31I	GGTCTC	2 cut(s)	34, 1901
Eco32I	GATATC	3 cut(s)	585, 670, 2278
Eco47I	GGWCC	1 cut(s)	1218
Eco53kI	GAGCTC	3 cut(s)	1258, 1676, 2307
Eco57I	CTGAAG	7 cut(s)	140, 236, 573, 1128, 1580, 1776, 1809
Eco88I	CYCGRG	1 cut(s)	2308
EcoICRI	GAGCTC	3 cut(s)	1258, 1676, 2307
EcoRI	GAATTC	1 cut(s)	52
EcoRV	GATATC	3 cut(s)	585, 670, 2278
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	3 cut(s)	855, 1708, 1828
EcoT38I	GRGCYC	3 cut(s)	1260, 1678, 2309
ErhI	CCWWGG	1 cut(s)	69
Esp3I	CGTCTC	1 cut(s)	414
FaeI	CATG	8 cut(s)	73, 182, 247, 381, 784, 1168, 1309, 1361
FalI	AAGNNNNNCTT	4 cut(s)	1985, 2017, 2096, 2128
FaqI	GGGAC	1 cut(s)	895
FatI	CATG	8 cut(s)	69, 178, 243, 377, 780, 1164, 1305, 1357
FauNDI	CATATG	1 cut(s)	1924
FbaI	TGATCA	1 cut(s)	1084
FokI	GGATG	6 cut(s)	35, 848, 862, 1052, 1850, 1991
FriOI	GRGCYC	3 cut(s)	1260, 1678, 2309
GlaI	GCGC	2 cut(s)	310, 718
GsuI	CTGGAG	6 cut(s)	116, 333, 1076, 1244, 1865, 2397
HaeIII	GGCC	4 cut(s)	74, 321, 644, 1814
HgaI	GACGC	2 cut(s)	431, 473
HhaI	GCGC	2 cut(s)	311, 719
Hin1II	CATG	8 cut(s)	73, 182, 247, 381, 784, 1168, 1309, 1361
Hin6I	GCGC	2 cut(s)	309, 717
HinP1I	GCGC	2 cut(s)	309, 717
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HindIII	AAGCTT	3 cut(s)	919, 1473, 1994
HpaI	GTTAAC	1 cut(s)	457
HphI	GGTGA	5 cut(s)	268, 776, 882, 1978, 2525
Hpy166II	GTNNAC	4 cut(s)	457, 1054, 1071, 1636
Hpy8I	GTNNAC	4 cut(s)	457, 1054, 1071, 1636
HpyCH4III	ACNGT	1 cut(s)	1068
HpyCH4IV	ACGT	4 cut(s)	114, 655, 1632, 2254
HpyF3I	CTNAG	7 cut(s)	1294, 1404, 1510, 1620, 1830, 1971, 2196
HpySE526I	ACGT	4 cut(s)	114, 655, 1632, 2254
Hsp92II	CATG	8 cut(s)	73, 182, 247, 381, 784, 1168, 1309, 1361
HspAI	GCGC	2 cut(s)	309, 717
Ksp22I	TGATCA	1 cut(s)	1084
KspAI	GTTAAC	1 cut(s)	457
Kzo9I	GATC	7 cut(s)	190, 736, 766, 1084, 1542, 1599, 2526
LguI	GCTCTTC	1 cut(s)	2088
LmnI	GCTCC	5 cut(s)	86, 314, 1263, 1846, 2304
Lsp1109I	GCAGC	7 cut(s)	1251, 1325, 1747, 1754, 1793, 1972, 2371
LweI	GCATC	8 cut(s)	109, 141, 586, 840, 851, 1813, 1835, 1960
MaeII	ACGT	4 cut(s)	114, 655, 1632, 2254
MaeIII	GTNAC	4 cut(s)	888, 1966, 2531, 2573
MalI	GATC	7 cut(s)	192, 738, 768, 1086, 1544, 1601, 2528
MbiI	CCGCTC	1 cut(s)	1501
MboI	GATC	7 cut(s)	190, 736, 766, 1084, 1542, 1599, 2526
MfeI	CAATTG	3 cut(s)	942, 1010, 2282
MflI	RGATCY	3 cut(s)	190, 1599, 2526
MhlI	GDGCHC	3 cut(s)	1260, 1678, 2309
MlyI	GAGTC	3 cut(s)	11, 1208, 1229
MmeI	TCCRAC	2 cut(s)	108, 1629
Mph1103I	ATGCAT	3 cut(s)	855, 1708, 1828
MroXI	GAANNNNTTC	2 cut(s)	56, 1441
MslI	CAYNNNNRTG	1 cut(s)	1101
MspA1I	CMGCKG	3 cut(s)	265, 1264, 1316
MunI	CAATTG	3 cut(s)	942, 1010, 2282
Mva1269I	GAATGC	2 cut(s)	1108, 1211
MvnI	CGCG	2 cut(s)	363, 717
NcoI	CCATGG	1 cut(s)	69
NdeI	CATATG	1 cut(s)	1924
NdeII	GATC	7 cut(s)	190, 736, 766, 1084, 1542, 1599, 2526
NlaIII	CATG	8 cut(s)	73, 182, 247, 381, 784, 1168, 1309, 1361
NlaIV	GGNNCC	1 cut(s)	871
NmuCI	GTSAC	4 cut(s)	888, 1966, 2531, 2573
NsiI	ATGCAT	3 cut(s)	855, 1708, 1828
NspI	RCATGY	1 cut(s)	247
PaeR7I	CTCGAG	1 cut(s)	2308
PagI	TCATGA	1 cut(s)	1164
PaqCI	CACCTGC	1 cut(s)	1954
PciSI	GCTCTTC	1 cut(s)	2088
PctI	GAATGC	2 cut(s)	1108, 1211
PdmI	GAANNNNTTC	2 cut(s)	56, 1441
PflFI	GACNNNGTC	1 cut(s)	886
PleI	GAGTC	3 cut(s)	11, 1207, 1229
PpsI	GAGTC	3 cut(s)	11, 1207, 1229
Ppu21I	YACGTR	2 cut(s)	1633, 2255
PshBI	ATTAAT	1 cut(s)	531
Psp124BI	GAGCTC	3 cut(s)	1260, 1678, 2309
Psp1406I	AACGTT	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	871
PspPI	GGNCC	3 cut(s)	73, 1218, 1812
PspXI	VCTCGAGB	1 cut(s)	2308
PstI	CTGCAG	1 cut(s)	1269
PstNI	CAGNNNCTG	2 cut(s)	1787, 1954
PsuI	RGATCY	3 cut(s)	190, 1599, 2526
PsyI	GACNNNGTC	1 cut(s)	886
PvuII	CAGCTG	3 cut(s)	265, 1264, 1316
RsaI	GTAC	7 cut(s)	137, 568, 1053, 1070, 1486, 1616, 2449
RsaNI	GTAC	7 cut(s)	136, 567, 1052, 1069, 1485, 1615, 2448
RseI	CAYNNNNRTG	1 cut(s)	1101
SacI	GAGCTC	3 cut(s)	1260, 1678, 2309
SapI	GCTCTTC	1 cut(s)	2088
Sau3AI	GATC	7 cut(s)	190, 736, 766, 1084, 1542, 1599, 2526
Sau96I	GGNCC	3 cut(s)	73, 1218, 1812
SchI	GAGTC	3 cut(s)	11, 1208, 1229
SduI	GDGCHC	3 cut(s)	1260, 1678, 2309
SfaNI	GCATC	8 cut(s)	109, 141, 586, 840, 851, 1813, 1835, 1960
SfcI	CTRYAG	2 cut(s)	426, 1265
Sfr274I	CTCGAG	1 cut(s)	2308
SinI	GGWCC	1 cut(s)	1218
SlaI	CTCGAG	1 cut(s)	2308
SmiMI	CAYNNNNRTG	1 cut(s)	1101
SmlI	CTYRAG	3 cut(s)	1553, 2085, 2308
SmoI	CTYRAG	3 cut(s)	1553, 2085, 2308
SnaBI	TACGTA	1 cut(s)	1633
SpeI	ACTAGT	1 cut(s)	811
SsiI	CCGC	8 cut(s)	66, 123, 254, 363, 386, 959, 1501, 1689
SspI	AATATT	1 cut(s)	2320
SstI	GAGCTC	3 cut(s)	1260, 1678, 2309
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	1068
TaiI	ACGT	4 cut(s)	117, 658, 1635, 2257
TaqI	TCGA	4 cut(s)	606, 771, 1379, 2309
TaqII	GACCGA	2 cut(s)	2473, 2555
TatI	WGTACW	3 cut(s)	1051, 1068, 2447
TauI	GCSGC	3 cut(s)	125, 961, 1691
TscAI	CASTG	4 cut(s)	1421, 1792, 2216, 2441
TseFI	GTSAC	4 cut(s)	888, 1966, 2531, 2573
TseI	GCWGC	7 cut(s)	1264, 1313, 1742, 1760, 1781, 1960, 2384
Tsp45I	GTSAC	4 cut(s)	888, 1966, 2531, 2573
TspGWI	ACGGA	5 cut(s)	363, 566, 1449, 2519, 2550
TspRI	CASTG	4 cut(s)	1421, 1792, 2216, 2441
Tth111I	GACNNNGTC	1 cut(s)	886
VpaK11BI	GGWCC	1 cut(s)	1218
VspI	ATTAAT	1 cut(s)	531
XapI	RAATTY	5 cut(s)	52, 968, 2079, 2414, 2518
XbaI	TCTAGA	3 cut(s)	1061, 1723, 2164
XceI	RCATGY	1 cut(s)	247
XhoI	CTCGAG	1 cut(s)	2308
XmnI	GAANNNNTTC	2 cut(s)	56, 1441
Zsp2I	ATGCAT	3 cut(s)	855, 1708, 1828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.