Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004358

Physical Location & Seq

Genomic Coordinates Reverse (-)

2447080 .. 2455042

Gene Structure 7963 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00002040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2880 bp

ATGGAAAACAATTCAGACTCGGATGAGCCAGAGAAGAAGAGACCTCATTTGAATTCGTTCTCGTCCGCCATGGCCCGAAGCTCCAACCCCTCGCCACCCAATGACCACCATAACTTTTGGGTTCGTGAAAAGGTTCGTTCTTGTTTGAATTGGTGTGATAGAATGGTGATTGGAGTTGTTGGGTTGTGTTTTCCTGGTTTGGATGTGGTTGTGGGATTGGTAGTATTGGGTTCTGCTAGAGCTGGAATTTTTGGAAAAGGGTTTGAACAAAGGTTCATTCTTGTTTTAGTTGCTGTGATAGAATGGTCATTGGAGTCATTGACTGTTTTTCCATTTTCTGATTTGGATGTTGATGCCGCAGTTCTCCAGTACCAGAACCAGATGATGCTTCAGCAGATAGACAAACAGAAGCATGAATTGCAAGATCTTGAAGCAAACATCAAAGAACTGAAGGCAAAGCAAGGTTCTTATGATGACATGCTAATTGCGGTGAATCAGCTGTGGAATCAGTTAGTTGGTGATGTAGCCCTTCTTGGAGTATGTGCTGGAGCAGGCCAAAATGCGTTGCAAGTTTTGGATTCTGCTGATTATTCTCGCGGTTCAATTCCGTCATGCGCTGCGGAGGAGATGTTTCTTTGTAGACTCTTACAAAGAGATGCTATAGAAGCTAACAACGTTGATGAAGTTGTTAACCATGTTGAAGAATCTCTCACTTTGCGTCATACATCAACTAGGGAGTTGATGAAACTCTTGGAACATACAATTAAAGTTGAGAGGGAAAAAACAGAGAACATAGCCCGTACTTTGAATGGAAAGATATCTTCAGAAGATGCTATTATCGAATTATCCAAGATTGATGATATGATTGAAAAGGAGGCCAACAATCTACATCAAGTGATTGATATCCTTCATTTGAAGCATAAAGAGTATGCTGATGTCATTCACACTCGCGCTAGTAGCGATTCAACAGATCAGTCTGAAATTAGACGAATTACAGGTGATCTCGATGACAGCATGGCTGAACTAGAGGAGAGTAGGAGAAAACTAGTCAATCTAAAAATGCAAAAGGATGTTGCATCTGGGATGCATAACCTTACTTCTGGTGCCGTGAATGGGACTTTGTCACCTGAAAAATCAACAGAAAGGACAATAAGCTTGCAGGAACTTAAAACTTCAATTGAGGAAACAAAGATACTTGCAGCCAGCCGCCTTTCTGAATTTCAAGAAGCACAGAAAGAAAATCTAGCATTGTCAAAACAATTGCAAGACTTTCAGAATGAAGTGAAGGATGAAAAATATGTACACTCATCTAGACTGTACACTATGCTAAATGATCAACTCCAGCATTGGAATGCTGAAGTGGAGAGATACAAAGCATTGACTGGTTCTTTACAGGCTGACAGGGCTGTTGTCCTGAGAAGGGAGAAGGAATTAAATCTCAAACTAGAGTCAGCAGAGGCATTCAGGACCATAAATGACAATGACTCTAGGATTGAGGAACTAGAGCTTCAGCTGCAGAAGTGCTTAATTGAAAAAAATGACTTAGAGATAAGCATGGAGGCAGCTGTTCAGGATTCAGGAAGAAAGGACATTACATCAGAGTTCCATGTGATGTCCTCATCTTTGTCGAAAGAGATGGAAATGATGGAAACTCAGTTGAAGCAGTGGAAGGAAACGGCTCACGGAACACTTTCCTTGCGTGAGAAATCCCAGTCTTTAAAAGCTTCATTAAGTACGAAGACAAATGAGCGGAACAGCTTAGCAAACAAATGTGCTGAACAGATGACAGAGATCAAGTCTCTCAAGGAATTGATTGAGAAGTTGCAGAAGGAGAAACTGGAACTTCAGATCTTCTTGGACTTGTATGCTCAGGAAAGCTACGTAAACAGAGACTTGTTGGAAATCAAAGAATCAGAACGCAGAGCTCACTCCCAAGCCGCTATGTTCAAAAATGCATTAGATGAACATAGTCTAGAGTTGAGGGTAAAAGCAGCCAATGAAGCTGAAGCTGCTTGTCAGCAAAGGCTTGCAGCCACTGAAGCTGAAATAACTGAATCAAGGGCCAAACTGGATGCATCTGAGAGGGATGTTCTGGAGCTTACCGAAGCTATTAAAATTAAAGACAAGGAGGCAGAGGCTTATATATCTGAAATTGAGACCATTGGTCAGGCATATGAAGATATGCAGACGCAAAACCAGCATCTGTTGCAGCAGGTGACTGAGAGGGATGATTATAATATCAAGCTTGTTTCTGAGAGTGTGAAGACAAAGCAAGCACAGAGCTTTCTACTTTCAGAGAAGCAGGCATTGGCAAAACAACTTCAACAAGTAAATACATCAGTAGAATCTCTGAAAATGAGAATTTCTCAAGATGAAGAGCAGATGAAGGCTGTCTTAACAGAAGCCTTGAAATCTACTGAGGAAGACAGACACCTTTCAGTCAATCTAGAAGCTGGAAAATGGGAACTGGCTGATTCTGAGAAGGAGTTGCAGTGGCTTAAATATGCTGTTGCTTCTTCTGAAAAGGAATATGCACGTATTAAACAGGATATTGAGGACATCCAATTGGAATTAGACAACGAGAGGAGCTTGAGGAAGAATATTGAGGAAGAACTATGGGAATTAAACAGCAGGGTTGTTGAGATGAGTTCTGAAACTGGAGAGGCTGCAATACAGAAACTCCAATCAGAAATCAAATTCTATAAGAATATTTTGCAGTGTAGTGTTTGTACTGACAGACCGAAGGAGGTGGTAATTGTGAAGTGCTTTCATCTATTTTGCAATTATTGCGTTCAAAAGAATTTAGAGATCCGTCACCGAAAGTGTCCTGCTTGTGGAACTCCGTTCGGTCAGAGTGACATACGCTTTGTAAAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006513 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009965 GO:0009987 GO:0010016 GO:0010154 GO:0010162 GO:0010228 GO:0010390 GO:0010431 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0019538 GO:0021700 GO:0022414 GO:0022611 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033523 GO:0036211 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051276 GO:0061458 GO:0070647 GO:0071695 GO:0071704 GO:0071840 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

959

Amino Acids

109.28

Weight (kDa)

5.13

Isoelectric Point (pI)

56.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	905 - 949	5e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	906 - 945	8.6e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	907 - 945	2.5e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55250 AT1G55250 AT1G55250 AT1G55250 AT1G55250
fragaria_vesca	FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811
malus_domestica	MD08G1205100.v1.1 MD15G1388900.v1.1
prunus_persica	Prupe.1G537100_v2.0.a1
pyrus_communis	pycom08g17730 pycom15g34870
rosa_chinensis	RchiOBHm_Chr5g0081511
rosa_laevigata	RLG00000036943
rosa_multiflora	Rmu_sc0007702.1_g000003
rosa_roxburghii	Rroxscaffold_1G00002040
rosa_rugosa	Rorug05G0476800
rosa_samantha	Rh5AG528300 Rh5BG553000 Rh5CG575900 Rh5DG563100
rosa_wichuraiana	Rw5G049140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2235
AarI	CACCTGC	1 cut(s)	2203
Acc36I	ACCTGC	1 cut(s)	2203
AccB1I	GGYRCC	1 cut(s)	1103
AccBSI	CCGCTC	1 cut(s)	1750
AccI	GTMKAC	1 cut(s)	640
AccII	CGCG	2 cut(s)	597, 951
AciI	CCGC	8 cut(s)	66, 357, 488, 597, 620, 1207, 1750, 1938
AclI	AACGTT	1 cut(s)	675
AclWI	GGATC	1 cut(s)	2803
AcsI	RAATTY	6 cut(s)	52, 246, 1217, 2361, 2696, 2800
AcuI	CTGAAG	8 cut(s)	374, 470, 807, 1377, 1493, 1829, 2025, 2058
AfaI	GTAC	6 cut(s)	371, 802, 1302, 1319, 1735, 2731
AfiI	CCNNNNNNNGG	3 cut(s)	1113, 1420, 2834
AhdI	GACNNNNNGTC	1 cut(s)	2163
AhlI	ACTAGT	1 cut(s)	1045
AjnI	CCWGG	1 cut(s)	193
AjuI	GAANNNNNNNTTGG	2 cut(s)	2291, 2323
Alw21I	GWGCWC	1 cut(s)	1927
Alw26I	GTCTC	4 cut(s)	34, 1803, 1884, 2150
AlwI	GGATC	1 cut(s)	2803
AlwNI	CAGNNNCTG	2 cut(s)	2036, 2203
AoxI	GGCC	4 cut(s)	72, 553, 876, 2061
ApeKI	GCWGC	9 cut(s)	617, 1199, 1513, 1562, 1991, 2009, 2030, 2209, 2666
ApoI	RAATTY	6 cut(s)	52, 246, 1217, 2361, 2696, 2800
ArsI	GACNNNNNNTTYG	1 cut(s)	2849
Asp700I	GAANNNNTTC	3 cut(s)	56, 132, 1690
AspLEI	GCGC	2 cut(s)	617, 953
AspS9I	GGNCC	3 cut(s)	73, 1467, 2061
AsuHPI	GGTGA	7 cut(s)	178, 502, 530, 1010, 1116, 2227, 2807
AvaII	GGWCC	1 cut(s)	1467
BanI	GGYRCC	1 cut(s)	1103
BanII	GRGCYC	1 cut(s)	1927
BbsI	GAAGAC	3 cut(s)	1745, 2270, 2430
Bbv12I	GWGCWC	1 cut(s)	1927
BbvI	GCAGC	9 cut(s)	604, 1211, 1500, 1574, 1996, 2003, 2042, 2221, 2653
BccI	CCATC	2 cut(s)	1630, 1639
BceAI	ACGGC	2 cut(s)	1091, 1692
BciT130I	CCWGG	1 cut(s)	195
BclI	TGATCA	1 cut(s)	1333
BcoDI	GTCTC	4 cut(s)	34, 1803, 1884, 2150
BcuI	ACTAGT	1 cut(s)	1045
BfmI	CTRYAG	2 cut(s)	660, 1514
BfuAI	ACCTGC	1 cut(s)	2203
BglII	AGATCT	2 cut(s)	424, 1848
BlpI	GCTNAGC	1 cut(s)	1759
Bme1390I	CCNGG	1 cut(s)	195
Bme18I	GGWCC	1 cut(s)	1467
BmeRI	GACNNNNNGTC	1 cut(s)	2163
BmgT120I	GGNCC	3 cut(s)	73, 1467, 2061
BmiI	GGNNCC	1 cut(s)	1105
BmrFI	CCNGG	1 cut(s)	195
BmrI	ACTGGG	1 cut(s)	1705
BmsI	GCATC	9 cut(s)	343, 375, 646, 820, 1074, 1085, 2062, 2084, 2209
BmuI	ACTGGG	1 cut(s)	1705
BpiI	GAAGAC	3 cut(s)	1745, 2270, 2430
BplI	GAGNNNNNCTC	2 cut(s)	2350, 2382
BpmI	CTGGAG	5 cut(s)	350, 567, 1325, 2114, 2679
Bpu10I	CCTNAGC	1 cut(s)	1869
Bpu1102I	GCTNAGC	1 cut(s)	1759
BpuEI	CTTGAG	3 cut(s)	1787, 2352, 2611
BsaAI	YACGTR	2 cut(s)	1882, 2537
BsaBI	GATNNNNATC	1 cut(s)	902
BsaI	GGTCTC	2 cut(s)	34, 2150
BsaJI	CCNNGG	1 cut(s)	69
BsaXI	ACNNNNNCTCC	6 cut(s)	614, 644, 2477, 2507, 2664, 2694
Bsc4I	CCNNNNNNNGG	3 cut(s)	1113, 1420, 2834
Bse1I	ACTGG	7 cut(s)	367, 1387, 1711, 1842, 2073, 2472, 2662
Bse8I	GATNNNNATC	1 cut(s)	902
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	69
BseJI	GATNNNNATC	1 cut(s)	902
BseLI	CCNNNNNNNGG	3 cut(s)	1113, 1420, 2834
BseMII	CTCAG	8 cut(s)	1406, 1667, 1883, 2070, 2211, 2244, 2409, 2469
BseNI	ACTGG	7 cut(s)	367, 1387, 1711, 1842, 2073, 2472, 2662
BseRI	GAGGAG	3 cut(s)	638, 1043, 2599
BseXI	GCAGC	9 cut(s)	604, 1211, 1500, 1574, 1996, 2003, 2042, 2221, 2653
Bsh1236I	CGCG	2 cut(s)	597, 951
BshFI	GGCC	4 cut(s)	74, 555, 878, 2063
BshNI	GGYRCC	1 cut(s)	1103
BsiHKAI	GWGCWC	1 cut(s)	1927
BslFI	GGGAC	1 cut(s)	1129
BslI	CCNNNNNNNGG	3 cut(s)	1113, 1420, 2834
BsmAI	GTCTC	4 cut(s)	34, 1803, 1884, 2150
BsmFI	GGGAC	1 cut(s)	1129
BsmI	GAATGC	2 cut(s)	1357, 1460
BsnI	GGCC	4 cut(s)	74, 555, 878, 2063
Bso31I	GGTCTC	2 cut(s)	34, 2150
Bsp1286I	GDGCHC	1 cut(s)	1927
Bsp1407I	TGTACA	2 cut(s)	1300, 1317
Bsp143I	GATC	7 cut(s)	424, 970, 1000, 1333, 1791, 1848, 2808
Bsp1720I	GCTNAGC	1 cut(s)	1759
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	8 cut(s)	66, 357, 488, 597, 620, 1207, 1750, 1938
BspANI	GGCC	4 cut(s)	74, 555, 878, 2063
BspCNI	CTCAG	8 cut(s)	1407, 1666, 1882, 2071, 2212, 2245, 2410, 2470
BspFNI	CGCG	2 cut(s)	597, 951
BspLI	GGNNCC	1 cut(s)	1105
BspMAI	CTGCAG	1 cut(s)	1518
BspMI	ACCTGC	1 cut(s)	2203
BspPI	GGATC	1 cut(s)	2803
BspQI	GCTCTTC	1 cut(s)	2370
BspT107I	GGYRCC	1 cut(s)	1103
BspTNI	GGTCTC	2 cut(s)	34, 2150
BsrBI	CCGCTC	1 cut(s)	1750
BsrGI	TGTACA	2 cut(s)	1300, 1317
BsrI	ACTGG	7 cut(s)	367, 1387, 1711, 1842, 2073, 2472, 2662
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	7 cut(s)	424, 970, 1000, 1333, 1791, 1848, 2808
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	2 cut(s)	325, 1317
Bst6I	CTCTTC	2 cut(s)	32, 2370
BstAPI	GCANNNNNTGC	3 cut(s)	418, 2206, 2787
BstAUI	TGTACA	2 cut(s)	1300, 1317
BstBAI	YACGTR	2 cut(s)	1882, 2537
BstC8I	GCNNGC	6 cut(s)	553, 1157, 1204, 2028, 2274, 2304
BstDSI	CCRYGG	1 cut(s)	69
BstFNI	CGCG	2 cut(s)	597, 951
BstHHI	GCGC	2 cut(s)	617, 953
BstKTI	GATC	7 cut(s)	427, 973, 1003, 1336, 1794, 1851, 2811
BstMAI	GTCTC	4 cut(s)	34, 1803, 1884, 2150
BstMBI	GATC	7 cut(s)	424, 970, 1000, 1333, 1791, 1848, 2808
BstNI	CCWGG	1 cut(s)	195
BstNSI	RCATGY	1 cut(s)	481
BstSCI	CCNGG	1 cut(s)	193
BstSFI	CTRYAG	2 cut(s)	660, 1514
BstSNI	TACGTA	1 cut(s)	1882
BstUI	CGCG	2 cut(s)	597, 951
BstV1I	GCAGC	9 cut(s)	604, 1211, 1500, 1574, 1996, 2003, 2042, 2221, 2653
BstV2I	GAAGAC	3 cut(s)	1745, 2270, 2430
BstX2I	RGATCY	3 cut(s)	424, 1848, 2808
BstYI	RGATCY	3 cut(s)	424, 1848, 2808
BsuRI	GGCC	4 cut(s)	74, 555, 878, 2063
BtgI	CCRYGG	1 cut(s)	69
BtsI	GCAGTG	3 cut(s)	1670, 2498, 2723
BtsIMutI	CAGTG	4 cut(s)	1670, 2034, 2498, 2723
BveI	ACCTGC	1 cut(s)	2203
Cac8I	GCNNGC	6 cut(s)	553, 1157, 1204, 2028, 2274, 2304
CaiI	CAGNNNCTG	2 cut(s)	2036, 2203
CfoI	GCGC	2 cut(s)	617, 953
Cfr13I	GGNCC	3 cut(s)	73, 1467, 2061
CseI	GACGC	2 cut(s)	707, 2197
Csp6I	GTAC	6 cut(s)	370, 801, 1301, 1318, 1734, 2730
CviAII	CATG	8 cut(s)	70, 413, 478, 612, 695, 1015, 1555, 1607
CviQI	GTAC	6 cut(s)	370, 801, 1301, 1318, 1734, 2730
DpnI	GATC	7 cut(s)	426, 972, 1002, 1335, 1793, 1850, 2810
DpnII	GATC	7 cut(s)	424, 970, 1000, 1333, 1791, 1848, 2808
DraI	TTTAAA	1 cut(s)	1719
DriI	GACNNNNNGTC	1 cut(s)	2163
Eam1104I	CTCTTC	2 cut(s)	32, 2370
Eam1105I	GACNNNNNGTC	1 cut(s)	2163
EarI	CTCTTC	2 cut(s)	32, 2370
EciI	GGCGGA	1 cut(s)	55
Ecl136II	GAGCTC	1 cut(s)	1925
Eco105I	TACGTA	1 cut(s)	1882
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	1927
Eco31I	GGTCTC	2 cut(s)	34, 2150
Eco32I	GATATC	2 cut(s)	819, 904
Eco47I	GGWCC	1 cut(s)	1467
Eco53kI	GAGCTC	1 cut(s)	1925
Eco57I	CTGAAG	8 cut(s)	374, 470, 807, 1377, 1493, 1829, 2025, 2058
EcoICRI	GAGCTC	1 cut(s)	1925
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	193
EcoRV	GATATC	2 cut(s)	819, 904
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	3 cut(s)	1089, 1957, 2077
EcoT38I	GRGCYC	1 cut(s)	1927
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	8 cut(s)	73, 416, 481, 615, 698, 1018, 1558, 1610
FalI	AAGNNNNNCTT	2 cut(s)	2378, 2410
FaqI	GGGAC	1 cut(s)	1129
FatI	CATG	8 cut(s)	69, 412, 477, 611, 694, 1014, 1554, 1606
FauNDI	CATATG	1 cut(s)	2173
FbaI	TGATCA	1 cut(s)	1333
FblI	GTMKAC	1 cut(s)	640
FriOI	GRGCYC	1 cut(s)	1927
GlaI	GCGC	2 cut(s)	616, 952
GsuI	CTGGAG	5 cut(s)	350, 567, 1325, 2114, 2679
HaeIII	GGCC	4 cut(s)	74, 555, 878, 2063
HgaI	GACGC	2 cut(s)	707, 2197
HhaI	GCGC	2 cut(s)	617, 953
Hin1II	CATG	8 cut(s)	73, 416, 481, 615, 698, 1018, 1558, 1610
Hin6I	GCGC	2 cut(s)	615, 951
HinP1I	GCGC	2 cut(s)	615, 951
HincII	GTYRAC	1 cut(s)	691
HindII	GTYRAC	1 cut(s)	691
HindIII	AAGCTT	3 cut(s)	1153, 1722, 2243
HpaI	GTTAAC	1 cut(s)	691
HphI	GGTGA	7 cut(s)	178, 502, 530, 1010, 1116, 2227, 2807
Hpy166II	GTNNAC	5 cut(s)	641, 691, 1303, 1320, 1885
Hpy8I	GTNNAC	5 cut(s)	641, 691, 1303, 1320, 1885
HpyCH4III	ACNGT	2 cut(s)	325, 1317
HpyCH4IV	ACGT	3 cut(s)	675, 1881, 2536
HpySE526I	ACGT	3 cut(s)	675, 1881, 2536
Hsp92II	CATG	8 cut(s)	73, 416, 481, 615, 698, 1018, 1558, 1610
HspAI	GCGC	2 cut(s)	615, 951
Ksp22I	TGATCA	1 cut(s)	1333
KspAI	GTTAAC	1 cut(s)	691
Kzo9I	GATC	7 cut(s)	424, 970, 1000, 1333, 1791, 1848, 2808
LguI	GCTCTTC	1 cut(s)	2370
LmnI	GCTCC	4 cut(s)	86, 548, 2095, 2586
Lsp1109I	GCAGC	9 cut(s)	604, 1211, 1500, 1574, 1996, 2003, 2042, 2221, 2653
LweI	GCATC	9 cut(s)	343, 375, 646, 820, 1074, 1085, 2062, 2084, 2209
MaeII	ACGT	3 cut(s)	675, 1881, 2536
MaeIII	GTNAC	4 cut(s)	1122, 2215, 2813, 2855
MalI	GATC	7 cut(s)	426, 972, 1002, 1335, 1793, 1850, 2810
MbiI	CCGCTC	1 cut(s)	1750
MboI	GATC	7 cut(s)	424, 970, 1000, 1333, 1791, 1848, 2808
MfeI	CAATTG	3 cut(s)	1176, 1259, 2564
MflI	RGATCY	3 cut(s)	424, 1848, 2808
MhlI	GDGCHC	1 cut(s)	1927
MlyI	GAGTC	5 cut(s)	11, 323, 636, 1457, 1478
MmeI	TCCRAC	2 cut(s)	108, 1878
Mph1103I	ATGCAT	3 cut(s)	1089, 1957, 2077
MroXI	GAANNNNTTC	3 cut(s)	56, 132, 1690
MslI	CAYNNNNRTG	1 cut(s)	1350
MspA1I	CMGCKG	3 cut(s)	499, 1513, 1565
MspR9I	CCNGG	1 cut(s)	195
MunI	CAATTG	3 cut(s)	1176, 1259, 2564
Mva1269I	GAATGC	2 cut(s)	1357, 1460
MvaI	CCWGG	1 cut(s)	195
MvnI	CGCG	2 cut(s)	597, 951
NcoI	CCATGG	1 cut(s)	69
NdeI	CATATG	1 cut(s)	2173
NdeII	GATC	7 cut(s)	424, 970, 1000, 1333, 1791, 1848, 2808
NlaIII	CATG	8 cut(s)	73, 416, 481, 615, 698, 1018, 1558, 1610
NlaIV	GGNNCC	1 cut(s)	1105
NmuCI	GTSAC	4 cut(s)	1122, 2215, 2813, 2855
NsiI	ATGCAT	3 cut(s)	1089, 1957, 2077
NspI	RCATGY	1 cut(s)	481
PaqCI	CACCTGC	1 cut(s)	2203
PciSI	GCTCTTC	1 cut(s)	2370
PctI	GAATGC	2 cut(s)	1357, 1460
PdmI	GAANNNNTTC	3 cut(s)	56, 132, 1690
PflFI	GACNNNGTC	1 cut(s)	1120
PleI	GAGTC	5 cut(s)	11, 322, 636, 1456, 1478
PpsI	GAGTC	5 cut(s)	11, 322, 636, 1456, 1478
Ppu21I	YACGTR	2 cut(s)	1882, 2537
PsiI	TTATAA	1 cut(s)	2235
Psp124BI	GAGCTC	1 cut(s)	1927
Psp1406I	AACGTT	1 cut(s)	675
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	1105
PspPI	GGNCC	3 cut(s)	73, 1467, 2061
PstI	CTGCAG	1 cut(s)	1518
PstNI	CAGNNNCTG	2 cut(s)	2036, 2203
PsuI	RGATCY	3 cut(s)	424, 1848, 2808
PsyI	GACNNNGTC	1 cut(s)	1120
PvuII	CAGCTG	3 cut(s)	499, 1513, 1565
RsaI	GTAC	6 cut(s)	371, 802, 1302, 1319, 1735, 2731
RsaNI	GTAC	6 cut(s)	370, 801, 1301, 1318, 1734, 2730
RseI	CAYNNNNRTG	1 cut(s)	1350
SacI	GAGCTC	1 cut(s)	1927
SapI	GCTCTTC	1 cut(s)	2370
Sau3AI	GATC	7 cut(s)	424, 970, 1000, 1333, 1791, 1848, 2808
Sau96I	GGNCC	3 cut(s)	73, 1467, 2061
SchI	GAGTC	5 cut(s)	11, 323, 636, 1457, 1478
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	1927
SfaNI	GCATC	9 cut(s)	343, 375, 646, 820, 1074, 1085, 2062, 2084, 2209
SfcI	CTRYAG	2 cut(s)	660, 1514
SinI	GGWCC	1 cut(s)	1467
SmiMI	CAYNNNNRTG	1 cut(s)	1350
SmlI	CTYRAG	3 cut(s)	1802, 2367, 2590
SmoI	CTYRAG	3 cut(s)	1802, 2367, 2590
SnaBI	TACGTA	1 cut(s)	1882
SpeI	ACTAGT	1 cut(s)	1045
SsiI	CCGC	8 cut(s)	66, 357, 488, 597, 620, 1207, 1750, 1938
SspI	AATATT	2 cut(s)	2602, 2710
SstI	GAGCTC	1 cut(s)	1927
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	325, 1317
TaiI	ACGT	3 cut(s)	678, 1884, 2539
TaqI	TCGA	3 cut(s)	840, 1005, 1628
TaqII	GACCGA	2 cut(s)	2755, 2837
TatI	WGTACW	3 cut(s)	1300, 1317, 2729
TauI	GCSGC	3 cut(s)	359, 1209, 1940
TscAI	CASTG	4 cut(s)	1670, 2041, 2498, 2723
TseFI	GTSAC	4 cut(s)	1122, 2215, 2813, 2855
TseI	GCWGC	9 cut(s)	617, 1199, 1513, 1562, 1991, 2009, 2030, 2209, 2666
Tsp45I	GTSAC	4 cut(s)	1122, 2215, 2813, 2855
TspGWI	ACGGA	4 cut(s)	597, 1698, 2801, 2832
TspRI	CASTG	4 cut(s)	1670, 2041, 2498, 2723
Tth111I	GACNNNGTC	1 cut(s)	1120
VpaK11BI	GGWCC	1 cut(s)	1467
XapI	RAATTY	6 cut(s)	52, 246, 1217, 2361, 2696, 2800
XbaI	TCTAGA	3 cut(s)	1310, 1972, 2446
XceI	RCATGY	1 cut(s)	481
XmiI	GTMKAC	1 cut(s)	640
XmnI	GAANNNNTTC	3 cut(s)	56, 132, 1690
Zsp2I	ATGCAT	3 cut(s)	1089, 1957, 2077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.