Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004358

Physical Location & Seq

Genomic Coordinates Forward (+)

86756404 .. 86763774

Gene Structure 7371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036943

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2646 bp

ATGGAAAACAATTCAGACTCGGATGAGCCAGAGAAGAAGAGACCTCATTTGAATTCGTTCTCGTCCGCCATGGCCCGAAGCTCCAACCCCTCGCCACCCAATGACCACCAGAACGTTGATGCCGCAGTTCTCCAGTGCCAGAACCAGATGATGCTTCAGCAGATAGACAAACAGAAGCATGAATTGCAAGATCTTGAAGCAAACATCAAAGAACTGAAGGCGAAGCAAGGTTCTTATGATGACATGCTAATTGCGGTGAATCAGCTGTGGAATCAGTTAGTTGGCGATGTAGCCCTTCTTGGAGTATGTGCTGGAGCAGGCCAAAATGTGTTGCACGTTTTGGATTCTGCTGATTATTCTCGCGGTTCAATTCCGTCATGCCCTGCGGAGGAGATGTTTCTTTGTAGAATCCTACAAAGAGATACTATAGAAGCTAACAACATTGATGAAGTTGTTAACTATGTTGAAGAATCTCTCACTTTGCGTCATACATCAACTAGGGAGTTGATGAAACTCTTGGAACATACAATTAATGTTGAGAGGCAAAAAACAGAGAACATAGCCCGTACTTTGAATGGAAAGATATCTTCAGAAGATGCTATTATCGAATTATCCAAGATTGATGATATGATTGAAAAGGAGGCCAACAATCTACATCAAGTAATTGATATCCTTCATTTGAAGCATAAAGAGTATGCTGATGTCATTCACACTCGCGCTAGTAGTGATTCAACAGATCAGTCTGAAATTAGACGAATTACAGGTGATCTCGATGACAGCATGGCTGAACTAGAGGAGAGTAGGAGAAAACTAGTCAATCTTAAAATGCAAAAGGATGTTGCATCTGGGATGCATAACCTTAATTCTGGTGCTGTGAATGGGACTTTGTCACCTGAAAAATCAACAGAAAGGACAATAAGCTTGCAGGAACTTAAAACTTCAATCGAAGAAACAAAGATACTTGCAGCCAGCCGCCTTTCTGAGTTTCAAGAAGCACAGAAAGAAAATCTAGCATTGTCAAAACAATTGCAAGACTTTCAGAATGAAGTGAAGGATGAAAAATATGTACACTCATCTAGACTGTACACTATGCTAAATGATCAACTCCAGCATTGGAATGCTGAAGTGGAGAGATACAAAGCATTGACTGGTTCTTTACAGGCTGACAGGGCTGTTGTCATGAGAAGGGAGAAGGAGTTAAATCTCAAACTAGAGTCAGCAGAGGCATTCAGGACCATAAATGAAAATGACTCTAGGATTGAGGAACTAGAGCTTCAGCTGCAGAAGTGCTTAATTGAAAAAAATGACTTAGAGATAAGCATGGAGGCAGCTGTCCAGGATTCAGGAAGAAAGGACATTACATCAGAGTTCCATGTGATGTCCTCATCTTTGTCAAAAGAGATGGAAATGATGGAAACTCAGTTGAAGCAGTGGAAGGAAACGGCTCACGAAACACTTTCCTTGCGTGAGAAATCCCAGTCTTTAAAAGCTTCATTAAGTACGAAGACAAATGAGCGGAATAGCTTAGCAAACAAATGTGCAGAACAGATGACAGAGATCAAGTCTCTCAAGGAATTGATTGAGAAGTTGCAGAAGGAGAAACTGGAACTTCAGATCTTCTTGGACTTGTATGCTCAGGAAAGCTACGTAAACAGAGACTTGTTGGAAATCAAAGAATCAGAACGCAGAGCTCACTCCCAAGCCGCTATGTTCAAAAATGCATTAGATGAACATAGTCTAGAGTTGAGGGTAAAAGCAGCCAATGAAGCTGAAGCTGCTTGTCAGCAAAGGCTTGCAGCCACTGAAGCTGAAATAACTGAATCAAGGGCCAAACTTGATGCATCTGAGAGGGATGTTCTGGAGCTTACCGAAGCTATTAAAATTAAAGACAAGGAGGCAGAGGCTTATATATCTGAAATTGAGACCATTGGTCAGGCATATGAAGATATGCAGACGCAAAACCAGCATCTGTTGCAGCAGGTGACTGAGAGGGATGATTATAATATCAAGCTCGTTTCTGAGAGTGTGAAGACAAAGCAAGCACAGAGCTTTCTACTTTCAGAGAAGCAGGCATTGGCAAAACAACTTCAACAAGTAAATACATCAGTAGAATCTCTGAAAATGAGAATTTCTCAAGATGAAGAGCAGATGAAGGCTGTCTTAACAGAAGCCTTGAAATCTACCGAGGAAGACAGGCACCTTTCAGTCAATCTAGAAGCTGGAAAATGGGAACTGGCTGATGCTGAGAAGGAGTCGCAGTGGCTTAAATATGCTGTCGCTTCTTCTGAAAAGGAATATGCACATATTAAACAGGATATTGAGGATATCCAATTGGAATTAGACAACGAGAGGAGCTTGAGGAAGAATATTGAGGAAGAACTATGGGAATTAAACAGCAGGGTTGTTGAGATGAGTTCTGAAACTGGAGAAGCTGCAATACAGAAACTCCAATCAGAAATCAAATTCTATAAGAATATTTTGCAGTGTAGTGTTTGTACTGACAGACCGAAGGAGGTGGTAATTGTGAAGTGCTTTCATCTATTTTGCAATTATTGCGTTCAAAAGAATTTAGAGATCCGTCACCGAAAGTGTCCTGCTTGTGGAACTCCGTTCGGTCAGAGTGACATACGCTTTGTAAAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006513 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009965 GO:0009987 GO:0010016 GO:0010154 GO:0010162 GO:0010228 GO:0010390 GO:0010431 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0019538 GO:0021700 GO:0022414 GO:0022611 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033523 GO:0036211 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051276 GO:0061458 GO:0070647 GO:0071695 GO:0071704 GO:0071840 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

882

Amino Acids

100.73

Weight (kDa)

5.09

Isoelectric Point (pI)

59.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	827 - 871	4.5e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	828 - 867	7.8e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	829 - 867	2.3e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55250 AT1G55250 AT1G55250 AT1G55250 AT1G55250
fragaria_vesca	FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811
malus_domestica	MD08G1205100.v1.1 MD15G1388900.v1.1
prunus_persica	Prupe.1G537100_v2.0.a1
pyrus_communis	pycom08g17730 pycom15g34870
rosa_chinensis	RchiOBHm_Chr5g0081511
rosa_laevigata	RLG00000036943
rosa_multiflora	Rmu_sc0007702.1_g000003
rosa_roxburghii	Rroxscaffold_1G00002040
rosa_rugosa	Rorug05G0476800
rosa_samantha	Rh5AG528300 Rh5BG553000 Rh5CG575900 Rh5DG563100
rosa_wichuraiana	Rw5G049140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2001
AarI	CACCTGC	1 cut(s)	1969
Acc36I	ACCTGC	1 cut(s)	1969
AccB1I	GGYRCC	1 cut(s)	2196
AccBSI	CCGCTC	1 cut(s)	1516
AccII	CGCG	2 cut(s)	363, 717
AciI	CCGC	8 cut(s)	66, 123, 254, 363, 386, 973, 1516, 1704
AclI	AACGTT	1 cut(s)	114
AclWI	GGATC	1 cut(s)	2569
AcsI	RAATTY	4 cut(s)	52, 2127, 2462, 2566
AcuI	CTGAAG	8 cut(s)	140, 236, 573, 1143, 1259, 1595, 1791, 1824
AfaI	GTAC	5 cut(s)	568, 1068, 1085, 1501, 2497
AfiI	CCNNNNNNNGG	2 cut(s)	388, 2600
AhdI	GACNNNNNGTC	1 cut(s)	1929
AhlI	ACTAGT	1 cut(s)	811
AjnI	CCWGG	1 cut(s)	1335
AjuI	GAANNNNNNNTTGG	2 cut(s)	2057, 2089
Alw21I	GWGCWC	1 cut(s)	1693
Alw26I	GTCTC	4 cut(s)	34, 1569, 1650, 1916
AlwI	GGATC	1 cut(s)	2569
AlwNI	CAGNNNCTG	2 cut(s)	1802, 1969
AoxI	GGCC	4 cut(s)	72, 319, 642, 1827
ApeKI	GCWGC	8 cut(s)	965, 1279, 1328, 1757, 1775, 1796, 1975, 2432
ApoI	RAATTY	4 cut(s)	52, 2127, 2462, 2566
ArsI	GACNNNNNNTTYG	1 cut(s)	2615
AseI	ATTAAT	1 cut(s)	531
Asp700I	GAANNNNTTC	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	719
AspS9I	GGNCC	3 cut(s)	73, 1233, 1827
AsuHPI	GGTGA	5 cut(s)	268, 776, 882, 1993, 2573
AvaII	GGWCC	1 cut(s)	1233
BanI	GGYRCC	1 cut(s)	2196
BanII	GRGCYC	1 cut(s)	1693
BarI	GAAGNNNNNNTAC	2 cut(s)	2421, 2453
BbsI	GAAGAC	3 cut(s)	1511, 2036, 2196
Bbv12I	GWGCWC	1 cut(s)	1693
BbvI	GCAGC	8 cut(s)	977, 1266, 1340, 1762, 1769, 1808, 1987, 2419
BccI	CCATC	2 cut(s)	1396, 1405
BceAI	ACGGC	1 cut(s)	1458
BciT130I	CCWGG	1 cut(s)	1337
BclI	TGATCA	1 cut(s)	1099
BcoDI	GTCTC	4 cut(s)	34, 1569, 1650, 1916
BcuI	ACTAGT	1 cut(s)	811
BfmI	CTRYAG	2 cut(s)	426, 1280
BfuAI	ACCTGC	1 cut(s)	1969
BglII	AGATCT	2 cut(s)	190, 1614
BlpI	GCTNAGC	1 cut(s)	1525
Bme1390I	CCNGG	1 cut(s)	1337
Bme18I	GGWCC	1 cut(s)	1233
BmeRI	GACNNNNNGTC	1 cut(s)	1929
BmgT120I	GGNCC	3 cut(s)	73, 1233, 1827
BmiI	GGNNCC	1 cut(s)	2198
BmrFI	CCNGG	1 cut(s)	1337
BmrI	ACTGGG	1 cut(s)	1471
BmsI	GCATC	9 cut(s)	109, 141, 586, 840, 851, 1828, 1850, 1975, 2230
BmuI	ACTGGG	1 cut(s)	1471
BpiI	GAAGAC	3 cut(s)	1511, 2036, 2196
BplI	GAGNNNNNCTC	2 cut(s)	2116, 2148
BpmI	CTGGAG	5 cut(s)	116, 333, 1091, 1880, 2445
Bpu10I	CCTNAGC	1 cut(s)	1635
Bpu1102I	GCTNAGC	1 cut(s)	1525
BpuEI	CTTGAG	3 cut(s)	1553, 2118, 2377
BsaAI	YACGTR	1 cut(s)	1648
BsaI	GGTCTC	2 cut(s)	34, 1916
BsaJI	CCNNGG	2 cut(s)	69, 2184
BsaXI	ACNNNNNCTCC	8 cut(s)	380, 410, 1181, 1211, 2243, 2273, 2430, 2460
Bsc4I	CCNNNNNNNGG	2 cut(s)	388, 2600
Bse1I	ACTGG	6 cut(s)	133, 1153, 1477, 1608, 2238, 2428
BseBI	CCWGG	1 cut(s)	1337
BseDI	CCNNGG	2 cut(s)	69, 2184
BseGI	GGATG	6 cut(s)	28, 841, 855, 1060, 1858, 1999
BseLI	CCNNNNNNNGG	2 cut(s)	388, 2600
BseMII	CTCAG	7 cut(s)	972, 1433, 1649, 1836, 1977, 2010, 2235
BseNI	ACTGG	6 cut(s)	133, 1153, 1477, 1608, 2238, 2428
BseRI	GAGGAG	3 cut(s)	404, 809, 2365
BseXI	GCAGC	8 cut(s)	977, 1266, 1340, 1762, 1769, 1808, 1987, 2419
BsgI	GTGCAG	1 cut(s)	1560
Bsh1236I	CGCG	2 cut(s)	363, 717
BshFI	GGCC	4 cut(s)	74, 321, 644, 1829
BshNI	GGYRCC	1 cut(s)	2196
BsiHKAI	GWGCWC	1 cut(s)	1693
BslFI	GGGAC	1 cut(s)	895
BslI	CCNNNNNNNGG	2 cut(s)	388, 2600
BsmAI	GTCTC	4 cut(s)	34, 1569, 1650, 1916
BsmFI	GGGAC	1 cut(s)	895
BsmI	GAATGC	2 cut(s)	1123, 1226
BsnI	GGCC	4 cut(s)	74, 321, 644, 1829
Bso31I	GGTCTC	2 cut(s)	34, 1916
Bsp1286I	GDGCHC	1 cut(s)	1693
Bsp1407I	TGTACA	2 cut(s)	1066, 1083
Bsp143I	GATC	7 cut(s)	190, 736, 766, 1099, 1557, 1614, 2574
Bsp1720I	GCTNAGC	1 cut(s)	1525
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	8 cut(s)	66, 123, 254, 363, 386, 973, 1516, 1704
BspANI	GGCC	4 cut(s)	74, 321, 644, 1829
BspCNI	CTCAG	7 cut(s)	973, 1432, 1648, 1837, 1978, 2011, 2236
BspFNI	CGCG	2 cut(s)	363, 717
BspHI	TCATGA	1 cut(s)	1179
BspLI	GGNNCC	1 cut(s)	2198
BspMAI	CTGCAG	1 cut(s)	1284
BspMI	ACCTGC	1 cut(s)	1969
BspPI	GGATC	1 cut(s)	2569
BspQI	GCTCTTC	1 cut(s)	2136
BspT107I	GGYRCC	1 cut(s)	2196
BspTNI	GGTCTC	2 cut(s)	34, 1916
BsrBI	CCGCTC	1 cut(s)	1516
BsrGI	TGTACA	2 cut(s)	1066, 1083
BsrI	ACTGG	6 cut(s)	133, 1153, 1477, 1608, 2238, 2428
BssECI	CCNNGG	2 cut(s)	69, 2184
BssMI	GATC	7 cut(s)	190, 736, 766, 1099, 1557, 1614, 2574
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	1337
Bst4CI	ACNGT	1 cut(s)	1083
Bst6I	CTCTTC	2 cut(s)	32, 2136
BstAPI	GCANNNNNTGC	3 cut(s)	184, 1972, 2553
BstAUI	TGTACA	2 cut(s)	1066, 1083
BstBAI	YACGTR	1 cut(s)	1648
BstC8I	GCNNGC	6 cut(s)	319, 923, 970, 1794, 2040, 2070
BstDEI	CTNAG	9 cut(s)	981, 1309, 1419, 1525, 1635, 1845, 1986, 2019, 2244
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	6 cut(s)	28, 841, 855, 1060, 1858, 1999
BstFNI	CGCG	2 cut(s)	363, 717
BstHHI	GCGC	1 cut(s)	719
BstKTI	GATC	7 cut(s)	193, 739, 769, 1102, 1560, 1617, 2577
BstMAI	GTCTC	4 cut(s)	34, 1569, 1650, 1916
BstMBI	GATC	7 cut(s)	190, 736, 766, 1099, 1557, 1614, 2574
BstMWI	GCNNNNNNNGC	9 cut(s)	184, 1169, 1279, 1766, 1775, 1805, 1963, 1972, 2553
BstNI	CCWGG	1 cut(s)	1337
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	1335
BstSFI	CTRYAG	2 cut(s)	426, 1280
BstSNI	TACGTA	1 cut(s)	1648
BstUI	CGCG	2 cut(s)	363, 717
BstV1I	GCAGC	8 cut(s)	977, 1266, 1340, 1762, 1769, 1808, 1987, 2419
BstV2I	GAAGAC	3 cut(s)	1511, 2036, 2196
BstX2I	RGATCY	3 cut(s)	190, 1614, 2574
BstYI	RGATCY	3 cut(s)	190, 1614, 2574
BsuRI	GGCC	4 cut(s)	74, 321, 644, 1829
BtgI	CCRYGG	1 cut(s)	69
BtgZI	GCGATG	1 cut(s)	300
BtsCI	GGATG	6 cut(s)	28, 841, 855, 1060, 1858, 1999
BtsI	GCAGTG	3 cut(s)	1436, 2264, 2489
BtsIMutI	CAGTG	5 cut(s)	140, 1436, 1800, 2264, 2489
BveI	ACCTGC	1 cut(s)	1969
Cac8I	GCNNGC	6 cut(s)	319, 923, 970, 1794, 2040, 2070
CaiI	CAGNNNCTG	2 cut(s)	1802, 1969
CciI	TCATGA	1 cut(s)	1179
CfoI	GCGC	1 cut(s)	719
Cfr13I	GGNCC	3 cut(s)	73, 1233, 1827
CseI	GACGC	2 cut(s)	473, 1963
Csp6I	GTAC	5 cut(s)	567, 1067, 1084, 1500, 2496
CviAII	CATG	8 cut(s)	70, 179, 244, 378, 781, 1180, 1321, 1373
CviQI	GTAC	5 cut(s)	567, 1067, 1084, 1500, 2496
DdeI	CTNAG	9 cut(s)	981, 1309, 1419, 1525, 1635, 1845, 1986, 2019, 2244
DpnI	GATC	7 cut(s)	192, 738, 768, 1101, 1559, 1616, 2576
DpnII	GATC	7 cut(s)	190, 736, 766, 1099, 1557, 1614, 2574
DraI	TTTAAA	1 cut(s)	1485
DriI	GACNNNNNGTC	1 cut(s)	1929
Eam1104I	CTCTTC	2 cut(s)	32, 2136
Eam1105I	GACNNNNNGTC	1 cut(s)	1929
EarI	CTCTTC	2 cut(s)	32, 2136
EciI	GGCGGA	1 cut(s)	55
Ecl136II	GAGCTC	1 cut(s)	1691
Eco105I	TACGTA	1 cut(s)	1648
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	1693
Eco31I	GGTCTC	2 cut(s)	34, 1916
Eco32I	GATATC	3 cut(s)	585, 670, 2326
Eco47I	GGWCC	1 cut(s)	1233
Eco53kI	GAGCTC	1 cut(s)	1691
Eco57I	CTGAAG	8 cut(s)	140, 236, 573, 1143, 1259, 1595, 1791, 1824
EcoICRI	GAGCTC	1 cut(s)	1691
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	1335
EcoRV	GATATC	3 cut(s)	585, 670, 2326
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	3 cut(s)	855, 1723, 1843
EcoT38I	GRGCYC	1 cut(s)	1693
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	8 cut(s)	73, 182, 247, 381, 784, 1183, 1324, 1376
FalI	AAGNNNNNCTT	2 cut(s)	2144, 2176
FaqI	GGGAC	1 cut(s)	895
FatI	CATG	8 cut(s)	69, 178, 243, 377, 780, 1179, 1320, 1372
FauNDI	CATATG	1 cut(s)	1939
FbaI	TGATCA	1 cut(s)	1099
FokI	GGATG	6 cut(s)	35, 848, 862, 1067, 1865, 2006
FriOI	GRGCYC	1 cut(s)	1693
GlaI	GCGC	1 cut(s)	718
GsuI	CTGGAG	5 cut(s)	116, 333, 1091, 1880, 2445
HaeIII	GGCC	4 cut(s)	74, 321, 644, 1829
HgaI	GACGC	2 cut(s)	473, 1963
HhaI	GCGC	1 cut(s)	719
Hin1II	CATG	8 cut(s)	73, 182, 247, 381, 784, 1183, 1324, 1376
Hin6I	GCGC	1 cut(s)	717
HinP1I	GCGC	1 cut(s)	717
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HindIII	AAGCTT	2 cut(s)	919, 1488
HpaI	GTTAAC	1 cut(s)	457
HphI	GGTGA	5 cut(s)	268, 776, 882, 1993, 2573
Hpy166II	GTNNAC	4 cut(s)	457, 1069, 1086, 1651
Hpy8I	GTNNAC	4 cut(s)	457, 1069, 1086, 1651
HpyCH4III	ACNGT	1 cut(s)	1083
HpyCH4IV	ACGT	3 cut(s)	114, 336, 1647
HpyF10VI	GCNNNNNNNGC	9 cut(s)	184, 1169, 1279, 1766, 1775, 1805, 1963, 1972, 2553
HpyF3I	CTNAG	9 cut(s)	981, 1309, 1419, 1525, 1635, 1845, 1986, 2019, 2244
HpySE526I	ACGT	3 cut(s)	114, 336, 1647
Hsp92II	CATG	8 cut(s)	73, 182, 247, 381, 784, 1183, 1324, 1376
HspAI	GCGC	1 cut(s)	717
Ksp22I	TGATCA	1 cut(s)	1099
KspAI	GTTAAC	1 cut(s)	457
Kzo9I	GATC	7 cut(s)	190, 736, 766, 1099, 1557, 1614, 2574
LguI	GCTCTTC	1 cut(s)	2136
LmnI	GCTCC	4 cut(s)	86, 314, 1861, 2352
Lsp1109I	GCAGC	8 cut(s)	977, 1266, 1340, 1762, 1769, 1808, 1987, 2419
LweI	GCATC	9 cut(s)	109, 141, 586, 840, 851, 1828, 1850, 1975, 2230
MaeII	ACGT	3 cut(s)	114, 336, 1647
MaeIII	GTNAC	4 cut(s)	888, 1981, 2579, 2621
MalI	GATC	7 cut(s)	192, 738, 768, 1101, 1559, 1616, 2576
MbiI	CCGCTC	1 cut(s)	1516
MboI	GATC	7 cut(s)	190, 736, 766, 1099, 1557, 1614, 2574
MfeI	CAATTG	2 cut(s)	1025, 2330
MflI	RGATCY	3 cut(s)	190, 1614, 2574
MhlI	GDGCHC	1 cut(s)	1693
MlyI	GAGTC	4 cut(s)	11, 1223, 1244, 2261
MmeI	TCCRAC	2 cut(s)	108, 1644
Mph1103I	ATGCAT	3 cut(s)	855, 1723, 1843
MroXI	GAANNNNTTC	1 cut(s)	56
MslI	CAYNNNNRTG	1 cut(s)	1116
MspA1I	CMGCKG	3 cut(s)	265, 1279, 1331
MspR9I	CCNGG	1 cut(s)	1337
MunI	CAATTG	2 cut(s)	1025, 2330
Mva1269I	GAATGC	2 cut(s)	1123, 1226
MvaI	CCWGG	1 cut(s)	1337
MvnI	CGCG	2 cut(s)	363, 717
MwoI	GCNNNNNNNGC	9 cut(s)	184, 1169, 1279, 1766, 1775, 1805, 1963, 1972, 2553
NcoI	CCATGG	1 cut(s)	69
NdeI	CATATG	1 cut(s)	1939
NdeII	GATC	7 cut(s)	190, 736, 766, 1099, 1557, 1614, 2574
NlaIII	CATG	8 cut(s)	73, 182, 247, 381, 784, 1183, 1324, 1376
NlaIV	GGNNCC	1 cut(s)	2198
NmuCI	GTSAC	4 cut(s)	888, 1981, 2579, 2621
NsiI	ATGCAT	3 cut(s)	855, 1723, 1843
NspI	RCATGY	1 cut(s)	247
PagI	TCATGA	1 cut(s)	1179
PaqCI	CACCTGC	1 cut(s)	1969
PciSI	GCTCTTC	1 cut(s)	2136
PctI	GAATGC	2 cut(s)	1123, 1226
PdmI	GAANNNNTTC	1 cut(s)	56
PflFI	GACNNNGTC	1 cut(s)	886
PfoI	TCCNGGA	1 cut(s)	1335
PleI	GAGTC	4 cut(s)	11, 1222, 1244, 2260
PpsI	GAGTC	4 cut(s)	11, 1222, 1244, 2260
Ppu21I	YACGTR	1 cut(s)	1648
PshBI	ATTAAT	1 cut(s)	531
PsiI	TTATAA	1 cut(s)	2001
Psp124BI	GAGCTC	1 cut(s)	1693
Psp1406I	AACGTT	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	1335
PspGI	CCWGG	1 cut(s)	1335
PspN4I	GGNNCC	1 cut(s)	2198
PspPI	GGNCC	3 cut(s)	73, 1233, 1827
PstI	CTGCAG	1 cut(s)	1284
PstNI	CAGNNNCTG	2 cut(s)	1802, 1969
PsuI	RGATCY	3 cut(s)	190, 1614, 2574
PsyI	GACNNNGTC	1 cut(s)	886
PvuII	CAGCTG	3 cut(s)	265, 1279, 1331
RsaI	GTAC	5 cut(s)	568, 1068, 1085, 1501, 2497
RsaNI	GTAC	5 cut(s)	567, 1067, 1084, 1500, 2496
RseI	CAYNNNNRTG	1 cut(s)	1116
SacI	GAGCTC	1 cut(s)	1693
SapI	GCTCTTC	1 cut(s)	2136
Sau3AI	GATC	7 cut(s)	190, 736, 766, 1099, 1557, 1614, 2574
Sau96I	GGNCC	3 cut(s)	73, 1233, 1827
SchI	GAGTC	4 cut(s)	11, 1223, 1244, 2261
ScrFI	CCNGG	1 cut(s)	1337
SduI	GDGCHC	1 cut(s)	1693
SfaNI	GCATC	9 cut(s)	109, 141, 586, 840, 851, 1828, 1850, 1975, 2230
SfcI	CTRYAG	2 cut(s)	426, 1280
SinI	GGWCC	1 cut(s)	1233
SmiMI	CAYNNNNRTG	1 cut(s)	1116
SmlI	CTYRAG	3 cut(s)	1568, 2133, 2356
SmoI	CTYRAG	3 cut(s)	1568, 2133, 2356
SnaBI	TACGTA	1 cut(s)	1648
SpeI	ACTAGT	1 cut(s)	811
SsiI	CCGC	8 cut(s)	66, 123, 254, 363, 386, 973, 1516, 1704
SspI	AATATT	2 cut(s)	2368, 2476
SstI	GAGCTC	1 cut(s)	1693
StyD4I	CCNGG	1 cut(s)	1335
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	1083
TaiI	ACGT	3 cut(s)	117, 339, 1650
TaqI	TCGA	3 cut(s)	606, 771, 945
TaqII	GACCGA	2 cut(s)	2521, 2603
TatI	WGTACW	3 cut(s)	1066, 1083, 2495
TauI	GCSGC	3 cut(s)	125, 975, 1706
TscAI	CASTG	5 cut(s)	140, 1436, 1807, 2264, 2489
TseFI	GTSAC	4 cut(s)	888, 1981, 2579, 2621
TseI	GCWGC	8 cut(s)	965, 1279, 1328, 1757, 1775, 1796, 1975, 2432
Tsp45I	GTSAC	4 cut(s)	888, 1981, 2579, 2621
TspGWI	ACGGA	3 cut(s)	363, 2567, 2598
TspRI	CASTG	5 cut(s)	140, 1436, 1807, 2264, 2489
Tth111I	GACNNNGTC	1 cut(s)	886
VpaK11BI	GGWCC	1 cut(s)	1233
VspI	ATTAAT	1 cut(s)	531
XapI	RAATTY	4 cut(s)	52, 2127, 2462, 2566
XbaI	TCTAGA	3 cut(s)	1076, 1738, 2212
XceI	RCATGY	1 cut(s)	247
XmnI	GAANNNNTTC	1 cut(s)	56
Zsp2I	ATGCAT	3 cut(s)	855, 1723, 1843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.