pycom08g20490

Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
20280277 .. 20285567
5291 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g20490.1

Sequence Viewer

Length: 1770 bp
ATGTTCTCTTCCGTCCGATCTCTCTCCCTCTCCCTCCTGTTCGTCTTCTTCCTCCTCGCCCCCGCTTTCGCCACCGAGGCAGATCACAAGTATCAAATAGAAGATTCAGTTACCCTTTGGGTGAATAAGGTTGGGCCCTACAATAATCCTCAAGAAACATACAATTACTACAGTCTTCCTTTCTGTCATCAATCTGAAAATGCTGCTCACAAGTGGGGTGGCCTTGGTGAAGTCCTGGGTGGAAATGAGTTGATTGATAGCCTGATTGAAATAAAATTTCAAAAAAATGTGGACAGGGCCACCATTTGCCAACTTGAACTTGACGATCAAAAGGTTAAACAATTCAAGGACGCAATCGAGAATAACTACTGGTTTGAATTTTTCATGGATGATCTCCCTTTATGGGGCTTTGTTGGTGAGTTGCACCAGGACAAGAACAGTGAAAATGGCAAGCATGTCCTTTACACTCATAAAAGTATCATTGTTAAATACAATAAAGACCAGATCATTCATGTGAATCTCACTCAAGATAGTCCAAAGCCATTGGAAGTAGGGAAGAAATTGGATCTAACATACTCTGTCAAATGGATTGCAACCACTGTCACCTTTGCACGTCGATTTGATGTCTATTTGGACTACCCTTTTTTTGAGCACCAAATACATTGGTTCTCGATTTTCAATTCATTCATGATGGTTATATTCCTTACGGGTTTGGTCTCAATGATATTGATGCGGACTCTTAGGAACGACTATGCAAAGTATGCTCGGGAAGACGACGATCTGGAGACTTTGGAAAGAGATGTCAGTGAAGAGTCTGGCTGGAAACTTGTGCATGGGGATGTTTTTCGGCCTTCTCGGAATTTGGTTGTTCTTTCAGCTCTTGTTGGCACAGGCGCTCAGCTAGCGTTGCTTGTTCTCCTCGTCATCTTACTGGCAATTGTTGGGATGTTGTATGTTGGGAGAGGTGCAATTGTAACAACTTTCATAGTGTGTTATGCCCTTACATCTTTCATTTCTGGTTATGTAAGTGGTGGGATGTATTCACGGCATGGGGGTAAAAACTGGATAAAGTCAATGATACTCACAGCATCCCTATTTCCATTTATGTGCTTCGGGATTGGGTTTGTCTTGAACACAATTGCTATTTTCTACGGGTCACTAGCAGCTATTCCTTTTGGCACAATGGTGGTTGTTTTTGTCATTTGGGCATTCATCTCTTTTCCTCTAGCACTTCTTGGTACAGTTGTTGGAAGGAACTGGAGTGGTGCTCCTAACAATCCTTGCCGTGTGAAAACCATTCCTCGTCCTATTCCTGAGAAGAAATGGTATTTAACCCCATCTGTAGTCTCAATGATGGGAGGACTTCTGCCCTTTGGAAGCATATTTATCGAAATGTATTTTGTCTTCACGTCCTTCTGGAATTACAAGGTGTACTATGTCTATGGCTTTATGCTGCTTGTTTTTCTGATTCTCATCATTGTTACCGTATGCGTGACAATTGTGGGGACATACTTCTTGCTTAATGCCGAGAACTACCACTGGCAATGGACTTCTTTCTTTTCTGCTGCATCAACAGCTGTCTACGTGTACTTGTATTCAATTTATTACTACCATGCAAAGACTAAGATGTCGGGTTTCTTCCAGACCAGCTTCTATTTTGGGTACACTTTGATGTTCTGCCTTGGCTTAGGGATCCTCTGCGGAGCTGTTGGATATTTGGGTTCCAATTTGTTTGTGAGGAGGATCTACAGAAATATCAAGTGCGATTAG

Protein Analysis

590

Amino Acids

67.34

Weight (kDa)

7.93

Isoelectric Point (pI)

32.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMP70 PF02990 53 - 546 5.6e-179 Endomembrane protein 70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10950
fragaria_vesca FvH4_5g28830
malus_domestica MD08G1236600.v1.1 MD15G1428600.v1.1
prunus_persica Prupe.1G573400_v2.0.a1 Prupe.1G573400_v2.0.a1
pyrus_communis pycom08g20490 pycom15g37960
rosa_chinensis RchiOBHm_Chr7g0221061
rosa_laevigata RLG00000002178
rosa_multiflora Rmu_sc0002105.1_g000001 Rmu_sc0012763.1_g000003
rosa_roxburghii Rroxscaffold_3G00238770
rosa_rugosa Rorug07G0200400
rosa_samantha Rh7AG339800
rosa_wichuraiana Rw7G028910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1627
AccI GTMKAC 1 cut(s) 1581
AciI CCGC 3 cut(s) 63, 733, 1701
AclWI GGATC 4 cut(s) 573, 1687, 1700, 1751
AcsI RAATTY 3 cut(s) 275, 377, 859
AfaI GTAC 4 cut(s) 1240, 1433, 1589, 1664
AfiI CCNNNNNNNGG 2 cut(s) 403, 404
AflIII ACRYGT 1 cut(s) 1584
AgsI TTSAA 8 cut(s) 269, 281, 317, 346, 377, 679, 1132, 1599
AjiI CACGTC 2 cut(s) 614, 1410
AjnI CCWGG 2 cut(s) 234, 426
AleI CACNNNNGTG 1 cut(s) 1184
AluBI AGCT 6 cut(s) 878, 901, 1166, 1577, 1650, 1706
AluI AGCT 6 cut(s) 878, 901, 1166, 1577, 1650, 1706
Alw21I GWGCWC 2 cut(s) 654, 1270
Alw26I GTCTC 3 cut(s) 721, 779, 1351
AlwI GGATC 4 cut(s) 573, 1687, 1700, 1751
Ama87I CYCGRG 1 cut(s) 765
AoxI GGCC 4 cut(s) 134, 220, 297, 848
ApaI GGGCCC 1 cut(s) 138
ApeKI GCWGC 4 cut(s) 203, 1163, 1453, 1565
ApoI RAATTY 3 cut(s) 275, 377, 859
AspLEI GCGC 1 cut(s) 896
AspS9I GGNCC 3 cut(s) 134, 135, 297
AsuHPI GGTGA 4 cut(s) 133, 239, 428, 595
AsuNHI GCTAGC 1 cut(s) 901
AvaI CYCGRG 1 cut(s) 765
BaeGI GKGCMC 1 cut(s) 138
BaeI ACNNNNGTAYC 2 cut(s) 1230, 1263
BamHI GGATCC 1 cut(s) 1692
BanII GRGCYC 1 cut(s) 138
BarI GAAGNNNNNNTAC 2 cut(s) 1388, 1420
BbsI GAAGAC 4 cut(s) 37, 167, 777, 1396
Bbv12I GWGCWC 2 cut(s) 654, 1270
BbvI GCAGC 4 cut(s) 190, 1175, 1440, 1552
BccI CCATC 3 cut(s) 685, 1345, 1348
BceAI ACGGC 2 cut(s) 1061, 1269
BcgI CGANNNNNNTGC 2 cut(s) 1369, 1403
BciT130I CCWGG 2 cut(s) 236, 428
BcoDI GTCTC 3 cut(s) 721, 779, 1351
BfaI CTAG 3 cut(s) 902, 1160, 1226
BfmI CTRYAG 3 cut(s) 169, 1341, 1747
BfoI RGCGCY 1 cut(s) 897
BglI GCCNNNNNGGC 1 cut(s) 77
BisI GCNGC 4 cut(s) 204, 1164, 1454, 1566
BlpI GCTNAGC 1 cut(s) 897
BlsI GCNGC 4 cut(s) 205, 1165, 1455, 1567
Bme1390I CCNGG 2 cut(s) 236, 428
BmeT110I CYCGRG 1 cut(s) 765
BmgBI CACGTC 2 cut(s) 614, 1410
BmgT120I GGNCC 3 cut(s) 134, 135, 297
BmiI GGNNCC 3 cut(s) 136, 1694, 1723
BmrFI CCNGG 2 cut(s) 236, 428
BmsI GCATC 3 cut(s) 720, 1097, 1577
BmtI GCTAGC 1 cut(s) 905
BpiI GAAGAC 4 cut(s) 37, 167, 777, 1396
BplI GAGNNNNNCTC 2 cut(s) 1252, 1284
BpmI CTGGAG 2 cut(s) 803, 1279
Bpu10I CCTNAGC 1 cut(s) 1687
Bpu1102I GCTNAGC 1 cut(s) 897
BpuEI CTTGAG 2 cut(s) 135, 510
BsaAI YACGTR 1 cut(s) 1585
BsaBI GATNNNNATC 1 cut(s) 1472
BsaI GGTCTC 1 cut(s) 721
BsaJI CCNNGG 4 cut(s) 75, 223, 235, 1681
Bsc4I CCNNNNNNNGG 2 cut(s) 403, 404
Bse1I ACTGG 5 cut(s) 374, 936, 1067, 1262, 1544
Bse3DI GCAATG 1 cut(s) 1550
Bse8I GATNNNNATC 1 cut(s) 1472
BseBI CCWGG 2 cut(s) 236, 428
BseDI CCNNGG 4 cut(s) 75, 223, 235, 1681
BseGI GGATG 5 cut(s) 394, 844, 951, 1041, 1088
BseJI GATNNNNATC 1 cut(s) 1472
BseLI CCNNNNNNNGG 2 cut(s) 403, 404
BseMI GCAATG 1 cut(s) 1550
BseMII CTCAG 2 cut(s) 911, 1305
BseNI ACTGG 5 cut(s) 374, 936, 1067, 1262, 1544
BseRI GAGGAG 3 cut(s) 44, 908, 1753
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 4 cut(s) 190, 1175, 1440, 1552
BshFI GGCC 4 cut(s) 136, 222, 299, 850
BsiHKAI GWGCWC 2 cut(s) 654, 1270
BsiHKCI CYCGRG 1 cut(s) 765
BslFI GGGAC 1 cut(s) 1519
BslI CCNNNNNNNGG 2 cut(s) 403, 404
BsmAI GTCTC 3 cut(s) 721, 779, 1351
BsmFI GGGAC 1 cut(s) 1519
BsmI GAATGC 1 cut(s) 1208
BsnI GGCC 4 cut(s) 136, 222, 299, 850
Bso31I GGTCTC 1 cut(s) 721
BsoBI CYCGRG 1 cut(s) 765
Bsp120I GGGCCC 1 cut(s) 134
Bsp1286I GDGCHC 3 cut(s) 138, 654, 1270
Bsp143I GATC 9 cut(s) 17, 82, 325, 391, 504, 565, 778, 1692, 1743
Bsp1720I GCTNAGC 1 cut(s) 897
BspACI CCGC 3 cut(s) 63, 733, 1701
BspANI GGCC 4 cut(s) 136, 222, 299, 850
BspCNI CTCAG 2 cut(s) 910, 1306
BspHI TCATGA 1 cut(s) 687
BspLI GGNNCC 3 cut(s) 136, 1694, 1723
BspOI GCTAGC 1 cut(s) 905
BspPI GGATC 4 cut(s) 573, 1687, 1700, 1751
BspTNI GGTCTC 1 cut(s) 721
BsrDI GCAATG 1 cut(s) 1550
BsrI ACTGG 5 cut(s) 374, 936, 1067, 1262, 1544
BssECI CCNNGG 4 cut(s) 75, 223, 235, 1681
BssMI GATC 9 cut(s) 17, 82, 325, 391, 504, 565, 778, 1692, 1743
BssT1I CCWWGG 2 cut(s) 223, 1681
Bst2UI CCWGG 2 cut(s) 236, 428
Bst4CI ACNGT 5 cut(s) 173, 440, 601, 1243, 1486
Bst6I CTCTTC 2 cut(s) 13, 804
BstAPI GCANNNNNTGC 1 cut(s) 761
BstBAI YACGTR 1 cut(s) 1585
BstC8I GCNNGC 2 cut(s) 452, 903
BstDEI CTNAG 5 cut(s) 740, 897, 1314, 1623, 1687
BstF5I GGATG 5 cut(s) 394, 844, 951, 1041, 1088
BstH2I RGCGCY 1 cut(s) 897
BstHHI GCGC 1 cut(s) 896
BstKTI GATC 9 cut(s) 20, 85, 328, 394, 507, 568, 781, 1695, 1746
BstMAI GTCTC 3 cut(s) 721, 779, 1351
BstMBI GATC 9 cut(s) 17, 82, 325, 391, 504, 565, 778, 1692, 1743
BstMWI GCNNNNNNNGC 5 cut(s) 77, 761, 902, 907, 1574
BstNI CCWGG 2 cut(s) 236, 428
BstNSI RCATGY 1 cut(s) 458
BstSCI CCNGG 2 cut(s) 234, 426
BstSFI CTRYAG 3 cut(s) 169, 1341, 1747
BstSLI GKGCMC 1 cut(s) 138
BstV1I GCAGC 4 cut(s) 190, 1175, 1440, 1552
BstV2I GAAGAC 4 cut(s) 37, 167, 777, 1396
BstX2I RGATCY 3 cut(s) 565, 1692, 1743
BstYI RGATCY 3 cut(s) 565, 1692, 1743
BsuRI GGCC 4 cut(s) 136, 222, 299, 850
BtrI CACGTC 2 cut(s) 614, 1410
BtsCI GGATG 5 cut(s) 394, 844, 951, 1041, 1088
BtsIMutI CAGTG 4 cut(s) 445, 597, 811, 1537
Cac8I GCNNGC 2 cut(s) 452, 903
CciI TCATGA 1 cut(s) 687
CfoI GCGC 1 cut(s) 896
Cfr13I GGNCC 3 cut(s) 134, 135, 297
CseI GACGC 1 cut(s) 359
Csp6I GTAC 4 cut(s) 1239, 1432, 1588, 1663
CspCI CAANNNNNGTGG 2 cut(s) 199, 234
CviAII CATG 7 cut(s) 385, 455, 512, 688, 833, 1049, 1613
CviQI GTAC 4 cut(s) 1239, 1432, 1588, 1663
DdeI CTNAG 5 cut(s) 740, 897, 1314, 1623, 1687
DpnI GATC 9 cut(s) 19, 84, 327, 393, 506, 567, 780, 1694, 1745
DpnII GATC 9 cut(s) 17, 82, 325, 391, 504, 565, 778, 1692, 1743
DrdI GACNNNNNNGTC 1 cut(s) 1627
DseDI GACNNNNNNGTC 1 cut(s) 1627
Eam1104I CTCTTC 2 cut(s) 13, 804
EarI CTCTTC 2 cut(s) 13, 804
Eco130I CCWWGG 2 cut(s) 223, 1681
Eco24I GRGCYC 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 721
Eco88I CYCGRG 1 cut(s) 765
EcoO109I RGGNCCY 1 cut(s) 135
EcoRII CCWGG 2 cut(s) 234, 426
EcoT14I CCWWGG 2 cut(s) 223, 1681
EcoT38I GRGCYC 1 cut(s) 138
ErhI CCWWGG 2 cut(s) 223, 1681
FaeI CATG 7 cut(s) 388, 458, 515, 691, 836, 1052, 1616
FaqI GGGAC 1 cut(s) 1519
FatI CATG 7 cut(s) 384, 454, 511, 687, 832, 1048, 1612
FauI CCCGC 1 cut(s) 70
FblI GTMKAC 1 cut(s) 1581
Fnu4HI GCNGC 4 cut(s) 204, 1164, 1454, 1566
FokI GGATG 5 cut(s) 401, 851, 958, 1048, 1075
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 4 cut(s) 204, 1164, 1454, 1566
FspBI CTAG 3 cut(s) 902, 1160, 1226
GlaI GCGC 1 cut(s) 895
GluI GCNGC 4 cut(s) 204, 1164, 1454, 1566
GsuI CTGGAG 2 cut(s) 803, 1279
HaeII RGCGCY 1 cut(s) 897
HaeIII GGCC 4 cut(s) 136, 222, 299, 850
HgaI GACGC 1 cut(s) 359
HhaI GCGC 1 cut(s) 896
Hin1II CATG 7 cut(s) 388, 458, 515, 691, 836, 1052, 1616
Hin6I GCGC 1 cut(s) 894
HinP1I GCGC 1 cut(s) 894
HinfI GANTC 5 cut(s) 104, 517, 736, 812, 1468
HphI GGTGA 4 cut(s) 133, 239, 428, 595
Hpy166II GTNNAC 5 cut(s) 292, 1432, 1582, 1588, 1665
Hpy188I TCNGA 4 cut(s) 17, 196, 858, 1467
Hpy8I GTNNAC 5 cut(s) 292, 1432, 1582, 1588, 1665
Hpy99I CGWCG 2 cut(s) 618, 779
HpyAV CCTTC 3 cut(s) 861, 1245, 1423
HpyCH4III ACNGT 5 cut(s) 173, 440, 601, 1243, 1486
HpyCH4IV ACGT 3 cut(s) 613, 1409, 1584
HpyCH4V TGCA 8 cut(s) 424, 593, 611, 755, 832, 968, 1568, 1616
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 761, 902, 907, 1574
HpyF3I CTNAG 5 cut(s) 740, 897, 1314, 1623, 1687
HpySE526I ACGT 3 cut(s) 613, 1409, 1584
Hsp92II CATG 7 cut(s) 388, 458, 515, 691, 836, 1052, 1616
HspAI GCGC 1 cut(s) 894
Kzo9I GATC 9 cut(s) 17, 82, 325, 391, 504, 565, 778, 1692, 1743
LmnI GCTCC 2 cut(s) 1273, 1703
Lsp1109I GCAGC 4 cut(s) 190, 1175, 1440, 1552
LweI GCATC 3 cut(s) 720, 1097, 1577
MaeI CTAG 3 cut(s) 902, 1160, 1226
MaeII ACGT 3 cut(s) 613, 1409, 1584
MaeIII GTNAC 6 cut(s) 109, 601, 973, 1155, 1480, 1492
MalI GATC 9 cut(s) 19, 84, 327, 393, 506, 567, 780, 1694, 1745
MboI GATC 9 cut(s) 17, 82, 325, 391, 504, 565, 778, 1692, 1743
MfeI CAATTG 4 cut(s) 936, 969, 1137, 1497
MflI RGATCY 3 cut(s) 565, 1692, 1743
MhlI GDGCHC 3 cut(s) 138, 654, 1270
MlyI GAGTC 2 cut(s) 730, 821
MmeI TCCRAC 2 cut(s) 1228, 1690
MseI TTAA 4 cut(s) 336, 486, 1331, 1521
MslI CAYNNNNRTG 5 cut(s) 512, 837, 1105, 1184, 1670
MspA1I CMGCKG 1 cut(s) 1577
MspR9I CCNGG 2 cut(s) 236, 428
MunI CAATTG 4 cut(s) 936, 969, 1137, 1497
Mva1269I GAATGC 1 cut(s) 1208
MvaI CCWGG 2 cut(s) 236, 428
MwoI GCNNNNNNNGC 5 cut(s) 77, 761, 902, 907, 1574
NdeII GATC 9 cut(s) 17, 82, 325, 391, 504, 565, 778, 1692, 1743
NheI GCTAGC 1 cut(s) 901
NlaIII CATG 7 cut(s) 388, 458, 515, 691, 836, 1052, 1616
NlaIV GGNNCC 3 cut(s) 136, 1694, 1723
NmeAIII GCCGAG 1 cut(s) 1552
NmuCI GTSAC 3 cut(s) 601, 1155, 1492
NspI RCATGY 1 cut(s) 458
OliI CACNNNNGTG 1 cut(s) 1184
PagI TCATGA 1 cut(s) 687
PctI GAATGC 1 cut(s) 1208
PfeI GAWTC 3 cut(s) 104, 517, 1468
PkrI GCNGC 4 cut(s) 205, 1165, 1455, 1567
PleI GAGTC 2 cut(s) 730, 820
PpsI GAGTC 2 cut(s) 730, 820
Ppu21I YACGTR 1 cut(s) 1585
Psp6I CCWGG 2 cut(s) 234, 426
PspGI CCWGG 2 cut(s) 234, 426
PspN4I GGNNCC 3 cut(s) 136, 1694, 1723
PspOMI GGGCCC 1 cut(s) 134
PspPI GGNCC 3 cut(s) 134, 135, 297
PsuI RGATCY 3 cut(s) 565, 1692, 1743
PvuII CAGCTG 1 cut(s) 1577
RsaI GTAC 4 cut(s) 1240, 1433, 1589, 1664
RsaNI GTAC 4 cut(s) 1239, 1432, 1588, 1663
RseI CAYNNNNRTG 5 cut(s) 512, 837, 1105, 1184, 1670
SaqAI TTAA 4 cut(s) 336, 486, 1331, 1521
SatI GCNGC 4 cut(s) 204, 1164, 1454, 1566
Sau3AI GATC 9 cut(s) 17, 82, 325, 391, 504, 565, 778, 1692, 1743
Sau96I GGNCC 3 cut(s) 134, 135, 297
SchI GAGTC 2 cut(s) 730, 821
ScrFI CCNGG 2 cut(s) 236, 428
SduI GDGCHC 3 cut(s) 138, 654, 1270
SfaNI GCATC 3 cut(s) 720, 1097, 1577
SfcI CTRYAG 3 cut(s) 169, 1341, 1747
SmiMI CAYNNNNRTG 5 cut(s) 512, 837, 1105, 1184, 1670
SmlI CTYRAG 2 cut(s) 150, 525
SmoI CTYRAG 2 cut(s) 150, 525
SsiI CCGC 3 cut(s) 63, 733, 1701
SspMI CTAG 3 cut(s) 902, 1160, 1226
StyD4I CCNGG 2 cut(s) 234, 426
StyI CCWWGG 2 cut(s) 223, 1681
TaaI ACNGT 5 cut(s) 173, 440, 601, 1243, 1486
TaiI ACGT 3 cut(s) 616, 1412, 1587
TaqI TCGA 4 cut(s) 357, 616, 671, 1389
TatI WGTACW 2 cut(s) 1431, 1587
TfiI GAWTC 3 cut(s) 104, 517, 1468
Tru1I TTAA 4 cut(s) 336, 486, 1331, 1521
Tru9I TTAA 4 cut(s) 336, 486, 1331, 1521
TscAI CASTG 4 cut(s) 445, 604, 811, 1544
TseFI GTSAC 3 cut(s) 601, 1155, 1492
TseI GCWGC 4 cut(s) 203, 1163, 1453, 1565
Tsp45I GTSAC 3 cut(s) 601, 1155, 1492
TspDTI ATGAA 7 cut(s) 373, 500, 672, 676, 973, 1000, 1201
TspRI CASTG 4 cut(s) 445, 604, 811, 1544
XapI RAATTY 3 cut(s) 275, 377, 859
XceI RCATGY 1 cut(s) 458
XmiI GTMKAC 1 cut(s) 1581
XspI CTAG 3 cut(s) 902, 1160, 1226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.