RchiOBHm_Chr7g0221061

Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0015388
Physical Location & Seq
Reverse (-)
41956463 .. 41962307
5845 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19784

Sequence Viewer

Length: 1776 bp
ATGTTCCCCGCCGTTGGATCTCTCTCACTCTTCGCCTTCGCCTTCGCTTGTCTTCTCCTCTCCCCCATAGCCTTCGCCTCCGAGGCAGATCACAAGTATCAAACAGAAGAACCAGTTACCCTTTGGGTAAACAAAGTTGGCCCTTATAACAATCCACAAGAAACATACAACTACTACAGTCTTCCTTTCTGTCATCCATCTGATCATGCTGCTCACAAATGGGGTGGTCTTGGTGAAGTCCTGGGTGGAAATGAACTTATTGATAGCCAGATTGACATAAAGTTCGGAAAAAATGTGGATAGGGCTACCATTTGTCCACTTGAACTTGATGATCATAAGGTTAAACAATTCAAGGATGCAATTGAGAATAGCTACTGGTTTGAGTTTTTCATGGATGATCTGCCTTTATGGGGCTTTGTTGGTGAGTTGCACCAGGATAAGAACAGTGAAAATGGCAAACATGTTCTTTACACGCATAAAAGTATTATTATTAAGTACAATAAAGATCAGATAATTCATGTCAATCTCACTCAAGATAGTCCAAAGCCTCTGGAAGCGGGAAAAAAATTGGATCTGACTTACTCTGTCAAATGGATTCCAACCACTATCACCTTTGCACGTCGATTTGATGTTTATTTGGACTACCCATTTTTCGAGCACCAAATCCATTGGTTCTCCATTTTCAATTCGTTCATGATGGTTATATTCCTCACTGGTCTGGTGTCAATGATACTGATGCGCACTCTTAGGAATGACTATGCAAAATATGCTCGGGAAGACGATGACCTAGAGACACTGGAAAGAGATGTTAGTGAAGAGTCTGGCTGGAAACTTGTGCATGGGGATGTTTTTCGACCTCCTCGGAGTTTGGTTATTCTTTCAGCTGTAGTTGGCACGGGAGCACAGTTGGCGTTGCTCGTTCTCCTTGTCATTTTACTGGCAATTGTTGGGATGTTGTATGTCGGGAGAGGTGCAATTGTTACAACTTTCATAGTGTGTTACGCTCTCACATCTTTCATTTCTGGTTATGTAAGTGGTGGGATGTATTCACGGCATGGGGGTAAAAACTGGATAAAGTCGATGATTCTCACAGCATCTCTATTTCCATTTATGTGCTTCGGAATTGGGTTTGTCTTGAATACAATTGCTATATTCTACGGGTCTCTAGCAGCTATACCATTCGGCACTATGGTAGTTGTCTTTGTCATTTGGGCTTTCATCTCGTTTCCTCTAGCGCTTCTTGGTACAGTTGTTGGAAGAAACTGGAGTGGTGCTCCTAATAATCCATGTCGTGTTAAAACTATTCCTCGTCCGATTCCTGAGAAAAAATGGTATTTGACGCCATCTGTGGTGTCGATGATGGGAGGACTTTTACCTTTTGGAAGCATATTCATCGAAATGTACTTTGTCTTCACGTCCTTCTGGAATTACAAGGTGTACTACGTCTATGGTTTTATGCTTCTTGTGTTTCTGATTCTCATCATTGTTACTGTATGCGTGACGATTGTGGGGACTTACTTCTTGCTTAATGCTGAGAATTACCACTGGCAATGGACGTCTTTCTTTTCTGCTGCATCGACAGCTGTGTACGTGTACTTGTATTCAATATATTACTACTATGCAAAGACGAAGATGTCAGGTTTCTTCCAGACGAGCTTCTATTTTGGATACACTCTGATGTTTTGCCTCGGCTTAGGAATCCTCTGTGGAGCTGTTGGATATTTGGGTTCAAATTTGTTTGTGAGGAGGATCTACAGAAACATCAAATGCGACTAG

Protein Analysis

591

Amino Acids

67.27

Weight (kDa)

7.57

Isoelectric Point (pI)

33.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMP70 PF02990 55 - 548 6.2e-181 Endomembrane protein 70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10950
fragaria_vesca FvH4_5g28830
malus_domestica MD08G1236600.v1.1 MD15G1428600.v1.1
prunus_persica Prupe.1G573400_v2.0.a1 Prupe.1G573400_v2.0.a1
pyrus_communis pycom08g20490 pycom15g37960
rosa_chinensis RchiOBHm_Chr7g0221061
rosa_laevigata RLG00000002178
rosa_multiflora Rmu_sc0002105.1_g000001 Rmu_sc0012763.1_g000003
rosa_roxburghii Rroxscaffold_3G00238770
rosa_rugosa Rorug07G0200400
rosa_samantha Rh7AG339800
rosa_wichuraiana Rw7G028910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 147
AasI GACNNNNNNGTC 1 cut(s) 1633
AatII GACGTC 1 cut(s) 1559
Acc16I TGCGCA 1 cut(s) 740
AciI CCGC 2 cut(s) 9, 557
AclWI GGATC 3 cut(s) 25, 579, 1757
AcsI RAATTY 1 cut(s) 1732
AcyI GRCGYC 2 cut(s) 1340, 1556
AfaI GTAC 6 cut(s) 497, 1246, 1403, 1439, 1589, 1595
AfeI AGCGCT 1 cut(s) 1236
AfiI CCNNNNNNNGG 2 cut(s) 14, 410
AflIII ACRYGT 2 cut(s) 460, 1590
AgsI TTSAA 6 cut(s) 323, 352, 685, 1138, 1605, 1731
AjiI CACGTC 2 cut(s) 620, 1416
AjnI CCWGG 2 cut(s) 240, 432
AluBI AGCT 6 cut(s) 372, 884, 1172, 1583, 1656, 1712
AluI AGCT 6 cut(s) 372, 884, 1172, 1583, 1656, 1712
Alw21I GWGCWC 3 cut(s) 660, 904, 1276
Alw26I GTCTC 2 cut(s) 785, 1167
AlwI GGATC 3 cut(s) 25, 579, 1757
Ama87I CYCGRG 1 cut(s) 771
Aor51HI AGCGCT 1 cut(s) 1236
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 3 cut(s) 209, 1169, 1571
ApoI RAATTY 1 cut(s) 1732
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AspLEI GCGC 2 cut(s) 741, 1237
AspS9I GGNCC 1 cut(s) 140
AsuHPI GGTGA 3 cut(s) 245, 434, 601
AvaI CYCGRG 1 cut(s) 771
BaeI ACNNNNGTAYC 2 cut(s) 1236, 1269
BarI GAAGNNNNNNTAC 2 cut(s) 1394, 1426
BbsI GAAGAC 4 cut(s) 44, 173, 783, 1402
Bbv12I GWGCWC 3 cut(s) 660, 904, 1276
BbvI GCAGC 3 cut(s) 196, 1181, 1558
BccI CCATC 4 cut(s) 205, 691, 1351, 1354
BceAI ACGGC 1 cut(s) 1067
BcgI CGANNNNNNTGC 2 cut(s) 1375, 1409
BciT130I CCWGG 2 cut(s) 242, 434
BciVI GTATCC 1 cut(s) 1661
BclI TGATCA 2 cut(s) 202, 331
BcoDI GTCTC 2 cut(s) 785, 1167
BfaI CTAG 4 cut(s) 788, 1166, 1232, 1774
BfmI CTRYAG 3 cut(s) 175, 885, 1753
BfoI RGCGCY 1 cut(s) 1238
BfuI GTATCC 1 cut(s) 1661
BglI GCCNNNNNGGC 1 cut(s) 83
BisI GCNGC 3 cut(s) 210, 1170, 1572
BlsI GCNGC 3 cut(s) 211, 1171, 1573
Bme1390I CCNGG 2 cut(s) 242, 434
BmeT110I CYCGRG 1 cut(s) 771
BmgBI CACGTC 2 cut(s) 620, 1416
BmgT120I GGNCC 1 cut(s) 140
BmrFI CCNGG 2 cut(s) 242, 434
BmsI GCATC 4 cut(s) 346, 726, 1103, 1583
BpiI GAAGAC 4 cut(s) 44, 173, 783, 1402
BplI GAGNNNNNCTC 2 cut(s) 1258, 1290
BpmI CTGGAG 1 cut(s) 1285
Bpu10I CCTNAGC 1 cut(s) 1693
BpuEI CTTGAG 1 cut(s) 516
BsaAI YACGTR 1 cut(s) 1591
BsaBI GATNNNNATC 1 cut(s) 1478
BsaHI GRCGYC 2 cut(s) 1340, 1556
BsaI GGTCTC 1 cut(s) 1167
BsaJI CCNNGG 4 cut(s) 81, 241, 860, 1687
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 410
Bse1I ACTGG 8 cut(s) 113, 380, 718, 801, 942, 1073, 1268, 1550
Bse3DI GCAATG 1 cut(s) 1556
Bse8I GATNNNNATC 1 cut(s) 1478
BseBI CCWGG 2 cut(s) 242, 434
BseDI CCNNGG 4 cut(s) 81, 241, 860, 1687
BseGI GGATG 6 cut(s) 193, 361, 400, 850, 957, 1047
BseJI GATNNNNATC 1 cut(s) 1478
BseLI CCNNNNNNNGG 2 cut(s) 14, 410
BseMI GCAATG 1 cut(s) 1556
BseMII CTCAG 2 cut(s) 1311, 1524
BseNI ACTGG 8 cut(s) 113, 380, 718, 801, 942, 1073, 1268, 1550
BseRI GAGGAG 3 cut(s) 47, 849, 1759
BseXI GCAGC 3 cut(s) 196, 1181, 1558
BshFI GGCC 1 cut(s) 141
BsiHKAI GWGCWC 3 cut(s) 660, 904, 1276
BsiHKCI CYCGRG 1 cut(s) 771
BslFI GGGAC 1 cut(s) 1525
BslI CCNNNNNNNGG 2 cut(s) 14, 410
BsmAI GTCTC 2 cut(s) 785, 1167
BsmFI GGGAC 1 cut(s) 1525
BsnI GGCC 1 cut(s) 141
Bso31I GGTCTC 1 cut(s) 1167
BsoBI CYCGRG 1 cut(s) 771
Bsp1286I GDGCHC 3 cut(s) 660, 904, 1276
Bsp143I GATC 8 cut(s) 17, 88, 202, 331, 397, 505, 571, 1749
BspACI CCGC 2 cut(s) 9, 557
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 2 cut(s) 1312, 1525
BspHI TCATGA 1 cut(s) 693
BspPI GGATC 3 cut(s) 25, 579, 1757
BspTNI GGTCTC 1 cut(s) 1167
BsrDI GCAATG 1 cut(s) 1556
BsrI ACTGG 8 cut(s) 113, 380, 718, 801, 942, 1073, 1268, 1550
BssECI CCNNGG 4 cut(s) 81, 241, 860, 1687
BssMI GATC 8 cut(s) 17, 88, 202, 331, 397, 505, 571, 1749
BssNI GRCGYC 2 cut(s) 1340, 1556
Bst2UI CCWGG 2 cut(s) 242, 434
Bst4CI ACNGT 5 cut(s) 179, 446, 906, 1249, 1492
Bst6I CTCTTC 2 cut(s) 35, 810
BstACI GRCGYC 2 cut(s) 1340, 1556
BstAPI GCANNNNNTGC 1 cut(s) 767
BstBAI YACGTR 1 cut(s) 1591
BstDEI CTNAG 4 cut(s) 746, 1320, 1533, 1693
BstF5I GGATG 6 cut(s) 193, 361, 400, 850, 957, 1047
BstH2I RGCGCY 1 cut(s) 1238
BstHHI GCGC 2 cut(s) 741, 1237
BstKTI GATC 8 cut(s) 20, 91, 205, 334, 400, 508, 574, 1752
BstMAI GTCTC 2 cut(s) 785, 1167
BstMBI GATC 8 cut(s) 17, 88, 202, 331, 397, 505, 571, 1749
BstMWI GCNNNNNNNGC 4 cut(s) 83, 767, 908, 1580
BstNI CCWGG 2 cut(s) 242, 434
BstNSI RCATGY 1 cut(s) 464
BstSCI CCNGG 2 cut(s) 240, 432
BstSFI CTRYAG 3 cut(s) 175, 885, 1753
BstV1I GCAGC 3 cut(s) 196, 1181, 1558
BstV2I GAAGAC 4 cut(s) 44, 173, 783, 1402
BstX2I RGATCY 3 cut(s) 17, 571, 1749
BstYI RGATCY 3 cut(s) 17, 571, 1749
BsuI GTATCC 1 cut(s) 1661
BsuRI GGCC 1 cut(s) 141
BtrI CACGTC 2 cut(s) 620, 1416
BtsCI GGATG 6 cut(s) 193, 361, 400, 850, 957, 1047
BtsIMutI CAGTG 4 cut(s) 451, 711, 794, 1543
CciI TCATGA 1 cut(s) 693
CfoI GCGC 2 cut(s) 741, 1237
Cfr13I GGNCC 1 cut(s) 140
CseI GACGC 1 cut(s) 1348
Csp6I GTAC 6 cut(s) 496, 1245, 1402, 1438, 1588, 1594
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviAII CATG 8 cut(s) 206, 391, 461, 518, 694, 839, 1055, 1287
CviQI GTAC 6 cut(s) 496, 1245, 1402, 1438, 1588, 1594
DdeI CTNAG 4 cut(s) 746, 1320, 1533, 1693
DpnI GATC 8 cut(s) 19, 90, 204, 333, 399, 507, 573, 1751
DpnII GATC 8 cut(s) 17, 88, 202, 331, 397, 505, 571, 1749
DrdI GACNNNNNNGTC 1 cut(s) 1633
DseDI GACNNNNNNGTC 1 cut(s) 1633
Eam1104I CTCTTC 2 cut(s) 35, 810
EarI CTCTTC 2 cut(s) 35, 810
Eco31I GGTCTC 1 cut(s) 1167
Eco47III AGCGCT 1 cut(s) 1236
Eco88I CYCGRG 1 cut(s) 771
EcoRII CCWGG 2 cut(s) 240, 432
FaeI CATG 8 cut(s) 209, 394, 464, 521, 697, 842, 1058, 1290
FaqI GGGAC 1 cut(s) 1525
FatI CATG 8 cut(s) 205, 390, 460, 517, 693, 838, 1054, 1286
FauI CCCGC 2 cut(s) 16, 550
FbaI TGATCA 2 cut(s) 202, 331
Fnu4HI GCNGC 3 cut(s) 210, 1170, 1572
FokI GGATG 6 cut(s) 180, 368, 407, 857, 964, 1054
Fsp4HI GCNGC 3 cut(s) 210, 1170, 1572
FspAI RTGCGCAY 1 cut(s) 740
FspBI CTAG 4 cut(s) 788, 1166, 1232, 1774
FspI TGCGCA 1 cut(s) 740
GlaI GCGC 2 cut(s) 740, 1236
GluI GCNGC 3 cut(s) 210, 1170, 1572
GsuI CTGGAG 1 cut(s) 1285
HaeII RGCGCY 1 cut(s) 1238
HaeIII GGCC 1 cut(s) 141
HgaI GACGC 1 cut(s) 1348
HhaI GCGC 2 cut(s) 741, 1237
Hin1I GRCGYC 2 cut(s) 1340, 1556
Hin1II CATG 8 cut(s) 209, 394, 464, 521, 697, 842, 1058, 1290
Hin6I GCGC 2 cut(s) 739, 1235
HinP1I GCGC 2 cut(s) 739, 1235
HinfI GANTC 6 cut(s) 595, 818, 1084, 1315, 1474, 1698
HphI GGTGA 3 cut(s) 245, 434, 601
Hpy166II GTNNAC 5 cut(s) 130, 317, 1438, 1588, 1594
Hpy188III TCNNGA 9 cut(s) 533, 551, 694, 773, 964, 1135, 1319, 1423, 1648
Hpy8I GTNNAC 5 cut(s) 130, 317, 1438, 1588, 1594
Hpy99I CGWCG 1 cut(s) 624
HpyAV CCTTC 4 cut(s) 46, 52, 82, 1429
HpyCH4III ACNGT 5 cut(s) 179, 446, 906, 1249, 1492
HpyCH4IV ACGT 5 cut(s) 619, 1415, 1443, 1556, 1590
HpyCH4V TGCA 8 cut(s) 359, 430, 617, 761, 838, 974, 1574, 1622
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 767, 908, 1580
HpyF3I CTNAG 4 cut(s) 746, 1320, 1533, 1693
HpySE526I ACGT 5 cut(s) 619, 1415, 1443, 1556, 1590
Hsp92I GRCGYC 2 cut(s) 1340, 1556
Hsp92II CATG 8 cut(s) 209, 394, 464, 521, 697, 842, 1058, 1290
HspAI GCGC 2 cut(s) 739, 1235
Ksp22I TGATCA 2 cut(s) 202, 331
Kzo9I GATC 8 cut(s) 17, 88, 202, 331, 397, 505, 571, 1749
LmnI GCTCC 3 cut(s) 899, 1279, 1709
Lsp1109I GCAGC 3 cut(s) 196, 1181, 1558
LweI GCATC 4 cut(s) 346, 726, 1103, 1583
MaeI CTAG 4 cut(s) 788, 1166, 1232, 1774
MaeII ACGT 5 cut(s) 619, 1415, 1443, 1556, 1590
MaeIII GTNAC 5 cut(s) 115, 979, 998, 1486, 1498
MalI GATC 8 cut(s) 19, 90, 204, 333, 399, 507, 573, 1751
MboI GATC 8 cut(s) 17, 88, 202, 331, 397, 505, 571, 1749
MfeI CAATTG 4 cut(s) 360, 942, 975, 1143
MflI RGATCY 3 cut(s) 17, 571, 1749
MhlI GDGCHC 3 cut(s) 660, 904, 1276
MlyI GAGTC 1 cut(s) 827
MmeI TCCRAC 3 cut(s) 623, 1234, 1696
MseI TTAA 4 cut(s) 342, 492, 1296, 1527
MslI CAYNNNNRTG 4 cut(s) 843, 1111, 1397, 1676
MspA1I CMGCKG 2 cut(s) 884, 1583
MspR9I CCNGG 2 cut(s) 242, 434
MunI CAATTG 4 cut(s) 360, 942, 975, 1143
MvaI CCWGG 2 cut(s) 242, 434
MwoI GCNNNNNNNGC 4 cut(s) 83, 767, 908, 1580
NdeII GATC 8 cut(s) 17, 88, 202, 331, 397, 505, 571, 1749
NlaIII CATG 8 cut(s) 209, 394, 464, 521, 697, 842, 1058, 1290
NmeAIII GCCGAG 1 cut(s) 1668
NmuCI GTSAC 1 cut(s) 1498
NsbI TGCGCA 1 cut(s) 740
NspI RCATGY 1 cut(s) 464
PagI TCATGA 1 cut(s) 693
PciI ACATGT 1 cut(s) 460
PfeI GAWTC 5 cut(s) 595, 1084, 1315, 1474, 1698
PkrI GCNGC 3 cut(s) 211, 1171, 1573
PleI GAGTC 1 cut(s) 826
PpsI GAGTC 1 cut(s) 826
Ppu21I YACGTR 1 cut(s) 1591
PscI ACATGT 1 cut(s) 460
PsiI TTATAA 1 cut(s) 147
Psp6I CCWGG 2 cut(s) 240, 432
PspGI CCWGG 2 cut(s) 240, 432
PspPI GGNCC 1 cut(s) 140
PsuI RGATCY 3 cut(s) 17, 571, 1749
PvuII CAGCTG 2 cut(s) 884, 1583
RsaI GTAC 6 cut(s) 497, 1246, 1403, 1439, 1589, 1595
RsaNI GTAC 6 cut(s) 496, 1245, 1402, 1438, 1588, 1594
RseI CAYNNNNRTG 4 cut(s) 843, 1111, 1397, 1676
SaqAI TTAA 4 cut(s) 342, 492, 1296, 1527
SatI GCNGC 3 cut(s) 210, 1170, 1572
Sau3AI GATC 8 cut(s) 17, 88, 202, 331, 397, 505, 571, 1749
Sau96I GGNCC 1 cut(s) 140
SchI GAGTC 1 cut(s) 827
ScrFI CCNGG 2 cut(s) 242, 434
SduI GDGCHC 3 cut(s) 660, 904, 1276
SfaNI GCATC 4 cut(s) 346, 726, 1103, 1583
SfcI CTRYAG 3 cut(s) 175, 885, 1753
SmiMI CAYNNNNRTG 4 cut(s) 843, 1111, 1397, 1676
SmlI CTYRAG 1 cut(s) 531
SmoI CTYRAG 1 cut(s) 531
SsiI CCGC 2 cut(s) 9, 557
SspMI CTAG 4 cut(s) 788, 1166, 1232, 1774
StyD4I CCNGG 2 cut(s) 240, 432
TaaI ACNGT 5 cut(s) 179, 446, 906, 1249, 1492
TaiI ACGT 5 cut(s) 622, 1418, 1446, 1559, 1593
TaqI TCGA 7 cut(s) 622, 654, 853, 1079, 1355, 1395, 1577
TatI WGTACW 4 cut(s) 495, 1401, 1437, 1593
TfiI GAWTC 5 cut(s) 595, 1084, 1315, 1474, 1698
Tru1I TTAA 4 cut(s) 342, 492, 1296, 1527
Tru9I TTAA 4 cut(s) 342, 492, 1296, 1527
TscAI CASTG 4 cut(s) 451, 718, 801, 1550
TseFI GTSAC 1 cut(s) 1498
TseI GCWGC 3 cut(s) 209, 1169, 1571
Tsp45I GTSAC 1 cut(s) 1498
TspDTI ATGAA 8 cut(s) 267, 379, 506, 682, 979, 1006, 1207, 1381
TspRI CASTG 4 cut(s) 451, 718, 801, 1550
XapI RAATTY 1 cut(s) 1732
XceI RCATGY 1 cut(s) 464
XcmI CCANNNNNNNNNTGG 1 cut(s) 120
XspI CTAG 4 cut(s) 788, 1166, 1232, 1774
ZraI GACGTC 1 cut(s) 1557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.