Rh7AG339800

Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
42777530 .. 42827411
49882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG339800.1

Sequence Viewer

Length: 1731 bp
ATGGCCACAGCCTCAACTCTGACTTACAATATTCCCTTGTTTCTTCTGCAGTATCAAACAGAAGAACCAGTTACCCTTTGGGTAAACAAAGTTGGCCCTTATAACAATCCACAAGAAACATACAATTACTACAGTCTTCCTTTCTGTCATCCATCTGATCATGCTGCTCACAAATGGGGTGGTCTTGGTGAAGTCCTGGGTGGAAATGAACTTATTGATAGCCAGATTGACATAAAGTTCGGAAAAAATGTGGATAGGGCTACCATTTGTCAACTTGAACTTGATGATCATAAGGTTAAACAATTCAAGGATGCAATTGAGAATAGCTACTGGTTTGAGTTTTTCATGGATGATCTGCCTTTATGGGGCTTTGTTGGTGAGTTGCACCAGGATAAGAACAGTGAAAATGGCAAACATGTTCTTTACACGCATAAAAGTATTATTATTAAGTACAATAAAGATCAGATAATTCATGTCAATCTCACTCAAGATAGTCCAAAGCCTCTGGAAGCGGGAAAAAAATTGGATCTGACTTACTCTGTCAAATGGATTGCAACCACTATCACCTTTGCACGTCGATTTGATGTTTATTTGGACTACCCATTTTTCGAGCACCAAATCCATTGGTTCTCCATTTTCAATTCGTTCATGATGGTTATATTCCTCACTGGTCTGGTGTCAATGATACTGATGCGCACTCTTAGGAATGACTATGCAAAATATGCTCGGGAAGACGATGACCTAGAGACACTGGAAAGAGATGTTAGTGAAGAGTCTGGCTGGAAACTTGTGCATGGGGATGTTTTTCGACCTCCTCGGAGTTTGGTTATTCTTTCAGCTGTAGTTGGCACGGGAGCACAGTTGGCGTTACTCGTTCTCCTTGTCATTTTACTGGCAATTGTTGGGATGTTGTATGTCGGGAGAGGTGCAATTGTTACAACTTTCATAGTGTGTTACGCTCTTACATCTTTCATTTCTGGTTATGTAAGTGGTGGGATGTATTCACGGCATGGGGGTAAAAACTGGATAAAGTCGATGATTCTCACAGCATCTCTATTTCCATTTATGTGCTTCGGAATTGGGTTTGTCTTGAATACAATTGCTATATTCTACGGGTCTCTAGCAGCTATACCATTCGGCACTATGGTAGTTGTCTTTGTCATTTGGGCTTTCATCTCGTTTCCTCTAGCGCTTCTTGGTACAGTTGTTGGAAGAAACTGGAGTGGTGCTCCTAATAATCCATGTCGTGTTAAAACTATTCCTCGTCCGATTCCTGAGAAAAAATGGTATTTGACGCCATCTGTGGTGTCGATGATGGGAGGACTTTTACCTTTTGGAAGCATATTCATCGAAATGTACTTTGTCTTCACGTCCTTCTGGAATTACAAGGTGTACTATGTCTATGGTTTTATGCTTCTTGTGTTTCTGATTCTCATCATTGTTACTGTATGCGTGACGATTGTGGGGACTTACTTCTTGCTTAATGCTGAGAATTACCACTGGCAATGGACGTCTTTCTTTTCTGCTGCATCAACAGCTGTGTACGTGTACTTGTATTCAATATATTACTACTATGCAAAGACGAAGATGTCAGGTTTCTTCCAGACGAGCTTCTATTTTGGATACACTCTGATGTTTTGCCTCGGCTTAGGAATCCTCTGTGGAGCTGTTGGATATTTGGGTTCAAATTTGTTTGTGAGGAGGATCTACAGAAACATCAAATGCGACTAG

Protein Analysis

576

Amino Acids

65.8

Weight (kDa)

7.93

Isoelectric Point (pI)

31.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMP70 PF02990 40 - 533 4e-181 Endomembrane protein 70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10950
fragaria_vesca FvH4_5g28830
malus_domestica MD08G1236600.v1.1 MD15G1428600.v1.1
prunus_persica Prupe.1G573400_v2.0.a1 Prupe.1G573400_v2.0.a1
pyrus_communis pycom08g20490 pycom15g37960
rosa_chinensis RchiOBHm_Chr7g0221061
rosa_laevigata RLG00000002178
rosa_multiflora Rmu_sc0002105.1_g000001 Rmu_sc0012763.1_g000003
rosa_roxburghii Rroxscaffold_3G00238770
rosa_rugosa Rorug07G0200400
rosa_samantha Rh7AG339800
rosa_wichuraiana Rw7G028910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 102
AasI GACNNNNNNGTC 1 cut(s) 1588
AatII GACGTC 1 cut(s) 1514
Acc16I TGCGCA 1 cut(s) 695
AciI CCGC 1 cut(s) 512
AclWI GGATC 2 cut(s) 534, 1712
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 1687
AcyI GRCGYC 2 cut(s) 1295, 1511
AfaI GTAC 6 cut(s) 452, 1201, 1358, 1394, 1544, 1550
AfeI AGCGCT 1 cut(s) 1191
AfiI CCNNNNNNNGG 1 cut(s) 365
AflIII ACRYGT 2 cut(s) 415, 1545
AgsI TTSAA 6 cut(s) 278, 307, 640, 1093, 1560, 1686
AjiI CACGTC 2 cut(s) 575, 1371
AjnI CCWGG 2 cut(s) 195, 387
AluBI AGCT 6 cut(s) 327, 839, 1127, 1538, 1611, 1667
AluI AGCT 6 cut(s) 327, 839, 1127, 1538, 1611, 1667
Alw21I GWGCWC 3 cut(s) 615, 859, 1231
Alw26I GTCTC 2 cut(s) 740, 1122
AlwI GGATC 2 cut(s) 534, 1712
Ama87I CYCGRG 1 cut(s) 726
Aor51HI AGCGCT 1 cut(s) 1191
AoxI GGCC 2 cut(s) 3, 94
ApeKI GCWGC 3 cut(s) 164, 1124, 1526
ApoI RAATTY 1 cut(s) 1687
ArsI GACNNNNNNTTYG 2 cut(s) 221, 253
AspLEI GCGC 2 cut(s) 696, 1192
AspS9I GGNCC 1 cut(s) 95
AsuHPI GGTGA 3 cut(s) 200, 389, 556
AvaI CYCGRG 1 cut(s) 726
BaeI ACNNNNGTAYC 2 cut(s) 1191, 1224
BalI TGGCCA 1 cut(s) 5
BarI GAAGNNNNNNTAC 2 cut(s) 1349, 1381
BbsI GAAGAC 3 cut(s) 128, 738, 1357
Bbv12I GWGCWC 3 cut(s) 615, 859, 1231
BbvI GCAGC 3 cut(s) 151, 1136, 1513
BccI CCATC 4 cut(s) 160, 646, 1306, 1309
BceAI ACGGC 1 cut(s) 1022
BcgI CGANNNNNNTGC 2 cut(s) 1330, 1364
BciT130I CCWGG 2 cut(s) 197, 389
BciVI GTATCC 1 cut(s) 1616
BclI TGATCA 2 cut(s) 157, 286
BcoDI GTCTC 2 cut(s) 740, 1122
BfaI CTAG 4 cut(s) 743, 1121, 1187, 1729
BfmI CTRYAG 4 cut(s) 47, 130, 840, 1708
BfoI RGCGCY 1 cut(s) 1193
BfuI GTATCC 1 cut(s) 1616
BisI GCNGC 3 cut(s) 165, 1125, 1527
BlsI GCNGC 3 cut(s) 166, 1126, 1528
Bme1390I CCNGG 2 cut(s) 197, 389
BmeT110I CYCGRG 1 cut(s) 726
BmgBI CACGTC 2 cut(s) 575, 1371
BmgT120I GGNCC 1 cut(s) 95
BmrFI CCNGG 2 cut(s) 197, 389
BmsI GCATC 4 cut(s) 301, 681, 1058, 1538
BpiI GAAGAC 3 cut(s) 128, 738, 1357
BplI GAGNNNNNCTC 2 cut(s) 1213, 1245
BpmI CTGGAG 1 cut(s) 1240
Bpu10I CCTNAGC 1 cut(s) 1648
BpuEI CTTGAG 1 cut(s) 471
BsaAI YACGTR 1 cut(s) 1546
BsaBI GATNNNNATC 1 cut(s) 1433
BsaHI GRCGYC 2 cut(s) 1295, 1511
BsaI GGTCTC 1 cut(s) 1122
BsaJI CCNNGG 3 cut(s) 196, 815, 1642
BsaXI ACNNNNNCTCC 2 cut(s) 861, 891
Bsc4I CCNNNNNNNGG 1 cut(s) 365
Bse1I ACTGG 8 cut(s) 68, 335, 673, 756, 897, 1028, 1223, 1505
Bse3DI GCAATG 1 cut(s) 1511
Bse8I GATNNNNATC 1 cut(s) 1433
BseBI CCWGG 2 cut(s) 197, 389
BseDI CCNNGG 3 cut(s) 196, 815, 1642
BseGI GGATG 6 cut(s) 148, 316, 355, 805, 912, 1002
BseJI GATNNNNATC 1 cut(s) 1433
BseLI CCNNNNNNNGG 1 cut(s) 365
BseMI GCAATG 1 cut(s) 1511
BseMII CTCAG 2 cut(s) 1266, 1479
BseNI ACTGG 8 cut(s) 68, 335, 673, 756, 897, 1028, 1223, 1505
BseRI GAGGAG 2 cut(s) 804, 1714
BseXI GCAGC 3 cut(s) 151, 1136, 1513
BshFI GGCC 2 cut(s) 5, 96
BsiHKAI GWGCWC 3 cut(s) 615, 859, 1231
BsiHKCI CYCGRG 1 cut(s) 726
BslFI GGGAC 1 cut(s) 1480
BslI CCNNNNNNNGG 1 cut(s) 365
BsmAI GTCTC 2 cut(s) 740, 1122
BsmFI GGGAC 1 cut(s) 1480
BsnI GGCC 2 cut(s) 5, 96
Bso31I GGTCTC 1 cut(s) 1122
BsoBI CYCGRG 1 cut(s) 726
Bsp1286I GDGCHC 3 cut(s) 615, 859, 1231
Bsp143I GATC 6 cut(s) 157, 286, 352, 460, 526, 1704
BspACI CCGC 1 cut(s) 512
BspANI GGCC 2 cut(s) 5, 96
BspCNI CTCAG 2 cut(s) 1267, 1480
BspHI TCATGA 1 cut(s) 648
BspMAI CTGCAG 1 cut(s) 51
BspPI GGATC 2 cut(s) 534, 1712
BspTNI GGTCTC 1 cut(s) 1122
BsrDI GCAATG 1 cut(s) 1511
BsrI ACTGG 8 cut(s) 68, 335, 673, 756, 897, 1028, 1223, 1505
BssECI CCNNGG 3 cut(s) 196, 815, 1642
BssMI GATC 6 cut(s) 157, 286, 352, 460, 526, 1704
BssNI GRCGYC 2 cut(s) 1295, 1511
Bst2UI CCWGG 2 cut(s) 197, 389
Bst4CI ACNGT 5 cut(s) 134, 401, 861, 1204, 1447
Bst6I CTCTTC 1 cut(s) 765
BstACI GRCGYC 2 cut(s) 1295, 1511
BstAPI GCANNNNNTGC 1 cut(s) 722
BstBAI YACGTR 1 cut(s) 1546
BstDEI CTNAG 4 cut(s) 701, 1275, 1488, 1648
BstF5I GGATG 6 cut(s) 148, 316, 355, 805, 912, 1002
BstH2I RGCGCY 1 cut(s) 1193
BstHHI GCGC 2 cut(s) 696, 1192
BstKTI GATC 6 cut(s) 160, 289, 355, 463, 529, 1707
BstMAI GTCTC 2 cut(s) 740, 1122
BstMBI GATC 6 cut(s) 157, 286, 352, 460, 526, 1704
BstMWI GCNNNNNNNGC 3 cut(s) 722, 863, 1535
BstNI CCWGG 2 cut(s) 197, 389
BstNSI RCATGY 1 cut(s) 419
BstSCI CCNGG 2 cut(s) 195, 387
BstSFI CTRYAG 4 cut(s) 47, 130, 840, 1708
BstV1I GCAGC 3 cut(s) 151, 1136, 1513
BstV2I GAAGAC 3 cut(s) 128, 738, 1357
BstX2I RGATCY 2 cut(s) 526, 1704
BstYI RGATCY 2 cut(s) 526, 1704
BsuI GTATCC 1 cut(s) 1616
BsuRI GGCC 2 cut(s) 5, 96
BtrI CACGTC 2 cut(s) 575, 1371
BtsCI GGATG 6 cut(s) 148, 316, 355, 805, 912, 1002
BtsIMutI CAGTG 4 cut(s) 406, 666, 749, 1498
CciI TCATGA 1 cut(s) 648
CfoI GCGC 2 cut(s) 696, 1192
Cfr13I GGNCC 1 cut(s) 95
CseI GACGC 1 cut(s) 1303
Csp6I GTAC 6 cut(s) 451, 1200, 1357, 1393, 1543, 1549
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviAII CATG 8 cut(s) 161, 346, 416, 473, 649, 794, 1010, 1242
CviQI GTAC 6 cut(s) 451, 1200, 1357, 1393, 1543, 1549
DdeI CTNAG 4 cut(s) 701, 1275, 1488, 1648
DpnI GATC 6 cut(s) 159, 288, 354, 462, 528, 1706
DpnII GATC 6 cut(s) 157, 286, 352, 460, 526, 1704
DrdI GACNNNNNNGTC 1 cut(s) 1588
DseDI GACNNNNNNGTC 1 cut(s) 1588
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 765
EarI CTCTTC 1 cut(s) 765
Eco31I GGTCTC 1 cut(s) 1122
Eco47III AGCGCT 1 cut(s) 1191
Eco88I CYCGRG 1 cut(s) 726
EcoRII CCWGG 2 cut(s) 195, 387
FaeI CATG 8 cut(s) 164, 349, 419, 476, 652, 797, 1013, 1245
FaqI GGGAC 1 cut(s) 1480
FatI CATG 8 cut(s) 160, 345, 415, 472, 648, 793, 1009, 1241
FauI CCCGC 1 cut(s) 505
FbaI TGATCA 2 cut(s) 157, 286
Fnu4HI GCNGC 3 cut(s) 165, 1125, 1527
FokI GGATG 6 cut(s) 135, 323, 362, 812, 919, 1009
Fsp4HI GCNGC 3 cut(s) 165, 1125, 1527
FspAI RTGCGCAY 1 cut(s) 695
FspBI CTAG 4 cut(s) 743, 1121, 1187, 1729
FspI TGCGCA 1 cut(s) 695
GlaI GCGC 2 cut(s) 695, 1191
GluI GCNGC 3 cut(s) 165, 1125, 1527
GsuI CTGGAG 1 cut(s) 1240
HaeII RGCGCY 1 cut(s) 1193
HaeIII GGCC 2 cut(s) 5, 96
HgaI GACGC 1 cut(s) 1303
HhaI GCGC 2 cut(s) 696, 1192
Hin1I GRCGYC 2 cut(s) 1295, 1511
Hin1II CATG 8 cut(s) 164, 349, 419, 476, 652, 797, 1013, 1245
Hin6I GCGC 2 cut(s) 694, 1190
HinP1I GCGC 2 cut(s) 694, 1190
HincII GTYRAC 1 cut(s) 272
HindII GTYRAC 1 cut(s) 272
HinfI GANTC 5 cut(s) 773, 1039, 1270, 1429, 1653
HphI GGTGA 3 cut(s) 200, 389, 556
Hpy166II GTNNAC 5 cut(s) 85, 272, 1393, 1543, 1549
Hpy188III TCNNGA 9 cut(s) 488, 506, 649, 728, 919, 1090, 1274, 1378, 1603
Hpy8I GTNNAC 5 cut(s) 85, 272, 1393, 1543, 1549
Hpy99I CGWCG 1 cut(s) 579
HpyAV CCTTC 1 cut(s) 1384
HpyCH4III ACNGT 5 cut(s) 134, 401, 861, 1204, 1447
HpyCH4IV ACGT 4 cut(s) 574, 1370, 1511, 1545
HpyF10VI GCNNNNNNNGC 3 cut(s) 722, 863, 1535
HpyF3I CTNAG 4 cut(s) 701, 1275, 1488, 1648
HpySE526I ACGT 4 cut(s) 574, 1370, 1511, 1545
Hsp92I GRCGYC 2 cut(s) 1295, 1511
Hsp92II CATG 8 cut(s) 164, 349, 419, 476, 652, 797, 1013, 1245
HspAI GCGC 2 cut(s) 694, 1190
Ksp22I TGATCA 2 cut(s) 157, 286
Kzo9I GATC 6 cut(s) 157, 286, 352, 460, 526, 1704
LmnI GCTCC 3 cut(s) 854, 1234, 1664
Lsp1109I GCAGC 3 cut(s) 151, 1136, 1513
LweI GCATC 4 cut(s) 301, 681, 1058, 1538
MaeI CTAG 4 cut(s) 743, 1121, 1187, 1729
MaeII ACGT 4 cut(s) 574, 1370, 1511, 1545
MaeIII GTNAC 6 cut(s) 70, 867, 934, 953, 1441, 1453
MalI GATC 6 cut(s) 159, 288, 354, 462, 528, 1706
MboI GATC 6 cut(s) 157, 286, 352, 460, 526, 1704
MboII GAAGA 9 cut(s) 35, 74, 128, 743, 782, 1224, 1357, 1591, 1597
MfeI CAATTG 4 cut(s) 315, 897, 930, 1098
MflI RGATCY 2 cut(s) 526, 1704
MhlI GDGCHC 3 cut(s) 615, 859, 1231
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 782
MmeI TCCRAC 2 cut(s) 1189, 1651
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 297, 447, 1251, 1482
MslI CAYNNNNRTG 4 cut(s) 798, 1066, 1352, 1631
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 839, 1538
MspR9I CCNGG 2 cut(s) 197, 389
MunI CAATTG 4 cut(s) 315, 897, 930, 1098
MvaI CCWGG 2 cut(s) 197, 389
MwoI GCNNNNNNNGC 3 cut(s) 722, 863, 1535
NdeII GATC 6 cut(s) 157, 286, 352, 460, 526, 1704
NlaIII CATG 8 cut(s) 164, 349, 419, 476, 652, 797, 1013, 1245
NmeAIII GCCGAG 1 cut(s) 1623
NmuCI GTSAC 1 cut(s) 1453
NsbI TGCGCA 1 cut(s) 695
NspI RCATGY 1 cut(s) 419
PagI TCATGA 1 cut(s) 648
PciI ACATGT 1 cut(s) 415
PfeI GAWTC 4 cut(s) 1039, 1270, 1429, 1653
PkrI GCNGC 3 cut(s) 166, 1126, 1528
PleI GAGTC 1 cut(s) 781
PpsI GAGTC 1 cut(s) 781
Ppu21I YACGTR 1 cut(s) 1546
PscI ACATGT 1 cut(s) 415
PsiI TTATAA 1 cut(s) 102
Psp6I CCWGG 2 cut(s) 195, 387
PspGI CCWGG 2 cut(s) 195, 387
PspPI GGNCC 1 cut(s) 95
PstI CTGCAG 1 cut(s) 51
PsuI RGATCY 2 cut(s) 526, 1704
PvuII CAGCTG 2 cut(s) 839, 1538
RsaI GTAC 6 cut(s) 452, 1201, 1358, 1394, 1544, 1550
RsaNI GTAC 6 cut(s) 451, 1200, 1357, 1393, 1543, 1549
RseI CAYNNNNRTG 4 cut(s) 798, 1066, 1352, 1631
SaqAI TTAA 4 cut(s) 297, 447, 1251, 1482
SatI GCNGC 3 cut(s) 165, 1125, 1527
Sau3AI GATC 6 cut(s) 157, 286, 352, 460, 526, 1704
Sau96I GGNCC 1 cut(s) 95
SchI GAGTC 1 cut(s) 782
ScrFI CCNGG 2 cut(s) 197, 389
SduI GDGCHC 3 cut(s) 615, 859, 1231
SfaNI GCATC 4 cut(s) 301, 681, 1058, 1538
SfcI CTRYAG 4 cut(s) 47, 130, 840, 1708
SmiMI CAYNNNNRTG 4 cut(s) 798, 1066, 1352, 1631
SmlI CTYRAG 1 cut(s) 486
SmoI CTYRAG 1 cut(s) 486
SsiI CCGC 1 cut(s) 512
SspI AATATT 1 cut(s) 31
SspMI CTAG 4 cut(s) 743, 1121, 1187, 1729
StyD4I CCNGG 2 cut(s) 195, 387
TaaI ACNGT 5 cut(s) 134, 401, 861, 1204, 1447
TaiI ACGT 4 cut(s) 577, 1373, 1514, 1548
TaqI TCGA 6 cut(s) 577, 609, 808, 1034, 1310, 1350
TatI WGTACW 4 cut(s) 450, 1356, 1392, 1548
TfiI GAWTC 4 cut(s) 1039, 1270, 1429, 1653
Tru1I TTAA 4 cut(s) 297, 447, 1251, 1482
Tru9I TTAA 4 cut(s) 297, 447, 1251, 1482
TscAI CASTG 4 cut(s) 406, 673, 756, 1505
TseFI GTSAC 1 cut(s) 1453
TseI GCWGC 3 cut(s) 164, 1124, 1526
Tsp45I GTSAC 1 cut(s) 1453
TspDTI ATGAA 8 cut(s) 222, 334, 461, 637, 934, 961, 1162, 1336
TspRI CASTG 4 cut(s) 406, 673, 756, 1505
XapI RAATTY 1 cut(s) 1687
XceI RCATGY 1 cut(s) 419
XcmI CCANNNNNNNNNTGG 1 cut(s) 75
XspI CTAG 4 cut(s) 743, 1121, 1187, 1729
ZraI GACGTC 1 cut(s) 1512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.