RLG00000002178

Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
26844682 .. 26849902
5221 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002178

Sequence Viewer

Length: 1782 bp
ATGTTCCCCACCGTTGGATCTCTCTCACTCTTCGCCTTCGCCTTCGCCTTCGCTTGTCTTCTCCTCTCCCCCATAGCCTTCGCCTCCGAAGCAGATCACAAGTATCAAACAGAAGAACCAGTTACCCTTTGGGTAAACAAAGTTGGCCCTTATAACAATCCACAAGAAACATATAATTACTACAGTCTCCCTTTTTGTCATCCATCTGATCATGCTGCTCACAAATGGGGTGGTCTTGGTGAAGTCCTGGGTGGAAATGAACTTATTGATAGCCAGATTGACATAAAGTTTGGAAAAAATGTGGATAGGGCTACCATTTGTCAACTTGAACTTGATGATCATAAGGTTAAACAATTCAAGGATGCAATTGAGAATAGCTACTGGTTTGAGTTTTTCATGGATGATCTGCCTTTATGGGGCTTTGTTGGTGAGTTGCACCAGGATAAGAACAGTGAAAATGGCAAACATGTTCTTTACACGCATAAAAGTATTATTATTAAGTACAATAAAGATCAGATAATTCATGTCAATCTCACTCAAGATAGTCCAAAGCCTCTGGAAGCTGGAAAAAAATTGGATCTGACTTACTCTGTCAAATGGATTCAAACCACTATCACCTTTGCACGTCGCTTTGATGTTTATTTGGACTACCCATTTTTCGAGCACCAAATCCATTGGTTCTCCATTTTCAATTCGTTCATGATGGTTATATTCCTCACTGGTCTGGTGTCAATGATACTGATGCGCACTCTTAGGAATGACTATGCAAAATATGCTCGGGAAGATGATGACCTAGAGACACTGGAAAGAGATGTTAGTGAAGAGTCTGGCTGGAAACTTGTGCATGGGGATGTTTTTCGACCTCCTCGGAGTTTGGTTATTCTTTCAGCTGTAGTTGGCACGGGAGCACAGTTGGCATTGCTCGTTCTCCTTGTCATTTTACTGGCAATTGTTGGGATGTTGTATGTCGGGAGAGGTGCAATTGTTACAACTTTCATAGTGTGTTATGCTCTTACATCTTTCATTTCTGGTTATGTAAGTGGTGGGATGTATTCACGGCATGGGGGTAAAAACTGGATAAAGTCGATGATTCTCACAGCATCTCTATTTCCATTTATGTGCTTCGGAATTGGGTTTGTCTTGAATACAATTGCTATATTCTACGGGTCTCTAGCAGCTATACCATTCGGCACTATGGTGGTTGTCTTTGTCATTTGGGCTTTCATCTCGTTTCCTTTAGCGCTTCTTGGTACAGTTGTTGGAAGAAACTGGAGTGGTGCTCCTAATAATCCATGTCGTGTTAAAACTATTCCTCGTCCGATTCCTGAGAAAAAATGGTATTTGACGCCATCTGTGGTGTCGATGATGGGAGGACTTTTACCTTTTGGAAGCATATTCATCGAAATGTACTTTGTCTTTACGTCCTTCTGGAATTACAAGGTGTACTATGTCTATGGTTTTATGCTTCTTGTGTTTCTGATTCTCATCATTGTTACTGTATGCGTGACGATTGTGGGAACCTACTTCTTGCTTAATGCTGAGAATTACCACTGGCAATGGACGTCTTTCTTTTCTGCTGCATCAACAGCTGTCTACGTGTACTTGTATTCAATATATTACTACTATGCAAAGACAAAGATGTCAGGTTTCTTCCAGACGAGCTTCTATTTTGGATACACTCTGATGTTTTGCCTCGGCTTAGGAATCCTCTGTGGAGCTGTTGGATATTTGGGTTCAAATTTGTTTGTGAGGAGGATCTACAGAAACATAAAATGCGACTAG

Protein Analysis

594

Amino Acids

67.58

Weight (kDa)

7.57

Isoelectric Point (pI)

32.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMP70 PF02990 57 - 550 2.2e-181 Endomembrane protein 70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10950
fragaria_vesca FvH4_5g28830
malus_domestica MD08G1236600.v1.1 MD15G1428600.v1.1
prunus_persica Prupe.1G573400_v2.0.a1 Prupe.1G573400_v2.0.a1
pyrus_communis pycom08g20490 pycom15g37960
rosa_chinensis RchiOBHm_Chr7g0221061
rosa_laevigata RLG00000002178
rosa_multiflora Rmu_sc0002105.1_g000001 Rmu_sc0012763.1_g000003
rosa_roxburghii Rroxscaffold_3G00238770
rosa_rugosa Rorug07G0200400
rosa_samantha Rh7AG339800
rosa_wichuraiana Rw7G028910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 153
AasI GACNNNNNNGTC 1 cut(s) 1639
AatII GACGTC 1 cut(s) 1565
Acc16I TGCGCA 1 cut(s) 746
AccI GTMKAC 1 cut(s) 1593
AclWI GGATC 3 cut(s) 25, 585, 1763
AcsI RAATTY 1 cut(s) 1738
AcyI GRCGYC 2 cut(s) 1346, 1562
AfaI GTAC 5 cut(s) 503, 1252, 1409, 1445, 1601
AfeI AGCGCT 1 cut(s) 1242
AfiI CCNNNNNNNGG 2 cut(s) 14, 416
AflIII ACRYGT 2 cut(s) 466, 1596
AgsI TTSAA 7 cut(s) 329, 358, 605, 691, 1144, 1611, 1737
AjiI CACGTC 1 cut(s) 626
AjnI CCWGG 2 cut(s) 246, 438
AleI CACNNNNGTG 1 cut(s) 1196
AluBI AGCT 7 cut(s) 378, 563, 890, 1178, 1589, 1662, 1718
AluI AGCT 7 cut(s) 378, 563, 890, 1178, 1589, 1662, 1718
Alw21I GWGCWC 3 cut(s) 666, 910, 1282
Alw26I GTCTC 3 cut(s) 191, 791, 1173
AlwI GGATC 3 cut(s) 25, 585, 1763
Ama87I CYCGRG 1 cut(s) 777
Aor51HI AGCGCT 1 cut(s) 1242
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 3 cut(s) 215, 1175, 1577
ApoI RAATTY 1 cut(s) 1738
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
AspLEI GCGC 2 cut(s) 747, 1243
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 3 cut(s) 251, 440, 607
AvaI CYCGRG 1 cut(s) 777
BaeI ACNNNNGTAYC 2 cut(s) 1242, 1275
BbsI GAAGAC 1 cut(s) 50
Bbv12I GWGCWC 3 cut(s) 666, 910, 1282
BbvI GCAGC 3 cut(s) 202, 1187, 1564
BccI CCATC 4 cut(s) 211, 697, 1357, 1360
BceAI ACGGC 1 cut(s) 1073
BcgI CGANNNNNNTGC 2 cut(s) 1381, 1415
BciT130I CCWGG 2 cut(s) 248, 440
BciVI GTATCC 1 cut(s) 1667
BclI TGATCA 2 cut(s) 208, 337
BcoDI GTCTC 3 cut(s) 191, 791, 1173
BfaI CTAG 3 cut(s) 794, 1172, 1780
BfmI CTRYAG 3 cut(s) 181, 891, 1759
BfoI RGCGCY 1 cut(s) 1244
BfuI GTATCC 1 cut(s) 1667
BisI GCNGC 3 cut(s) 216, 1176, 1578
BlsI GCNGC 3 cut(s) 217, 1177, 1579
Bme1390I CCNGG 2 cut(s) 248, 440
BmeT110I CYCGRG 1 cut(s) 777
BmgBI CACGTC 1 cut(s) 626
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 1519
BmrFI CCNGG 2 cut(s) 248, 440
BmsI GCATC 4 cut(s) 352, 732, 1109, 1589
BpiI GAAGAC 1 cut(s) 50
BplI GAGNNNNNCTC 2 cut(s) 1264, 1296
BpmI CTGGAG 1 cut(s) 1291
Bpu10I CCTNAGC 1 cut(s) 1699
BpuEI CTTGAG 1 cut(s) 522
BsaAI YACGTR 1 cut(s) 1597
BsaBI GATNNNNATC 1 cut(s) 1484
BsaHI GRCGYC 2 cut(s) 1346, 1562
BsaI GGTCTC 1 cut(s) 1173
BsaJI CCNNGG 3 cut(s) 247, 866, 1693
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 416
Bse1I ACTGG 8 cut(s) 119, 386, 724, 807, 948, 1079, 1274, 1556
Bse3DI GCAATG 2 cut(s) 917, 1562
Bse8I GATNNNNATC 1 cut(s) 1484
BseBI CCWGG 2 cut(s) 248, 440
BseDI CCNNGG 3 cut(s) 247, 866, 1693
BseGI GGATG 6 cut(s) 199, 367, 406, 856, 963, 1053
BseJI GATNNNNATC 1 cut(s) 1484
BseLI CCNNNNNNNGG 2 cut(s) 14, 416
BseMI GCAATG 2 cut(s) 917, 1562
BseMII CTCAG 2 cut(s) 1317, 1530
BseNI ACTGG 8 cut(s) 119, 386, 724, 807, 948, 1079, 1274, 1556
BseRI GAGGAG 3 cut(s) 53, 855, 1765
BseXI GCAGC 3 cut(s) 202, 1187, 1564
BshFI GGCC 1 cut(s) 147
BsiHKAI GWGCWC 3 cut(s) 666, 910, 1282
BsiHKCI CYCGRG 1 cut(s) 777
BslI CCNNNNNNNGG 2 cut(s) 14, 416
BsmAI GTCTC 3 cut(s) 191, 791, 1173
BsnI GGCC 1 cut(s) 147
Bso31I GGTCTC 1 cut(s) 1173
BsoBI CYCGRG 1 cut(s) 777
Bsp1286I GDGCHC 3 cut(s) 666, 910, 1282
Bsp143I GATC 8 cut(s) 17, 94, 208, 337, 403, 511, 577, 1755
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 2 cut(s) 1318, 1531
BspHI TCATGA 1 cut(s) 699
BspLI GGNNCC 1 cut(s) 1519
BspPI GGATC 3 cut(s) 25, 585, 1763
BspTNI GGTCTC 1 cut(s) 1173
BsrDI GCAATG 2 cut(s) 917, 1562
BsrI ACTGG 8 cut(s) 119, 386, 724, 807, 948, 1079, 1274, 1556
BssECI CCNNGG 3 cut(s) 247, 866, 1693
BssMI GATC 8 cut(s) 17, 94, 208, 337, 403, 511, 577, 1755
BssNI GRCGYC 2 cut(s) 1346, 1562
Bst2UI CCWGG 2 cut(s) 248, 440
Bst4CI ACNGT 6 cut(s) 13, 185, 452, 912, 1255, 1498
Bst6I CTCTTC 2 cut(s) 35, 816
BstACI GRCGYC 2 cut(s) 1346, 1562
BstAPI GCANNNNNTGC 1 cut(s) 773
BstBAI YACGTR 1 cut(s) 1597
BstDEI CTNAG 4 cut(s) 752, 1326, 1539, 1699
BstF5I GGATG 6 cut(s) 199, 367, 406, 856, 963, 1053
BstH2I RGCGCY 1 cut(s) 1244
BstHHI GCGC 2 cut(s) 747, 1243
BstKTI GATC 8 cut(s) 20, 97, 211, 340, 406, 514, 580, 1758
BstMAI GTCTC 3 cut(s) 191, 791, 1173
BstMBI GATC 8 cut(s) 17, 94, 208, 337, 403, 511, 577, 1755
BstMWI GCNNNNNNNGC 4 cut(s) 89, 773, 914, 1586
BstNI CCWGG 2 cut(s) 248, 440
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 2 cut(s) 246, 438
BstSFI CTRYAG 3 cut(s) 181, 891, 1759
BstV1I GCAGC 3 cut(s) 202, 1187, 1564
BstV2I GAAGAC 1 cut(s) 50
BstX2I RGATCY 3 cut(s) 17, 577, 1755
BstYI RGATCY 3 cut(s) 17, 577, 1755
BsuI GTATCC 1 cut(s) 1667
BsuRI GGCC 1 cut(s) 147
BtrI CACGTC 1 cut(s) 626
BtsCI GGATG 6 cut(s) 199, 367, 406, 856, 963, 1053
BtsIMutI CAGTG 4 cut(s) 457, 717, 800, 1549
CciI TCATGA 1 cut(s) 699
CfoI GCGC 2 cut(s) 747, 1243
Cfr13I GGNCC 1 cut(s) 146
CseI GACGC 1 cut(s) 1354
Csp6I GTAC 5 cut(s) 502, 1251, 1408, 1444, 1600
CspCI CAANNNNNGTGG 2 cut(s) 211, 246
CviAII CATG 8 cut(s) 212, 397, 467, 524, 700, 845, 1061, 1293
CviQI GTAC 5 cut(s) 502, 1251, 1408, 1444, 1600
DdeI CTNAG 4 cut(s) 752, 1326, 1539, 1699
DpnI GATC 8 cut(s) 19, 96, 210, 339, 405, 513, 579, 1757
DpnII GATC 8 cut(s) 17, 94, 208, 337, 403, 511, 577, 1755
DrdI GACNNNNNNGTC 1 cut(s) 1639
DseDI GACNNNNNNGTC 1 cut(s) 1639
Eam1104I CTCTTC 2 cut(s) 35, 816
EarI CTCTTC 2 cut(s) 35, 816
Eco31I GGTCTC 1 cut(s) 1173
Eco47III AGCGCT 1 cut(s) 1242
Eco88I CYCGRG 1 cut(s) 777
EcoRII CCWGG 2 cut(s) 246, 438
FaeI CATG 8 cut(s) 215, 400, 470, 527, 703, 848, 1064, 1296
FatI CATG 8 cut(s) 211, 396, 466, 523, 699, 844, 1060, 1292
FbaI TGATCA 2 cut(s) 208, 337
FblI GTMKAC 1 cut(s) 1593
Fnu4HI GCNGC 3 cut(s) 216, 1176, 1578
FokI GGATG 6 cut(s) 186, 374, 413, 863, 970, 1060
Fsp4HI GCNGC 3 cut(s) 216, 1176, 1578
FspAI RTGCGCAY 1 cut(s) 746
FspBI CTAG 3 cut(s) 794, 1172, 1780
FspI TGCGCA 1 cut(s) 746
GlaI GCGC 2 cut(s) 746, 1242
GluI GCNGC 3 cut(s) 216, 1176, 1578
GsuI CTGGAG 1 cut(s) 1291
HaeII RGCGCY 1 cut(s) 1244
HaeIII GGCC 1 cut(s) 147
HgaI GACGC 1 cut(s) 1354
HhaI GCGC 2 cut(s) 747, 1243
Hin1I GRCGYC 2 cut(s) 1346, 1562
Hin1II CATG 8 cut(s) 215, 400, 470, 527, 703, 848, 1064, 1296
Hin6I GCGC 2 cut(s) 745, 1241
HinP1I GCGC 2 cut(s) 745, 1241
HincII GTYRAC 1 cut(s) 323
HindII GTYRAC 1 cut(s) 323
HinfI GANTC 6 cut(s) 601, 824, 1090, 1321, 1480, 1704
HphI GGTGA 3 cut(s) 251, 440, 607
Hpy166II GTNNAC 5 cut(s) 136, 323, 1444, 1594, 1600
Hpy188I TCNGA 9 cut(s) 88, 208, 516, 582, 870, 1127, 1320, 1479, 1683
Hpy188III TCNNGA 9 cut(s) 539, 557, 700, 779, 970, 1141, 1325, 1429, 1654
Hpy8I GTNNAC 5 cut(s) 136, 323, 1444, 1594, 1600
Hpy99I CGWCG 1 cut(s) 630
HpyAV CCTTC 5 cut(s) 46, 52, 58, 88, 1435
HpyCH4III ACNGT 6 cut(s) 13, 185, 452, 912, 1255, 1498
HpyCH4IV ACGT 4 cut(s) 625, 1421, 1562, 1596
HpyCH4V TGCA 8 cut(s) 365, 436, 623, 767, 844, 980, 1580, 1628
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 773, 914, 1586
HpyF3I CTNAG 4 cut(s) 752, 1326, 1539, 1699
HpySE526I ACGT 4 cut(s) 625, 1421, 1562, 1596
Hsp92I GRCGYC 2 cut(s) 1346, 1562
Hsp92II CATG 8 cut(s) 215, 400, 470, 527, 703, 848, 1064, 1296
HspAI GCGC 2 cut(s) 745, 1241
Ksp22I TGATCA 2 cut(s) 208, 337
Kzo9I GATC 8 cut(s) 17, 94, 208, 337, 403, 511, 577, 1755
LmnI GCTCC 3 cut(s) 905, 1285, 1715
Lsp1109I GCAGC 3 cut(s) 202, 1187, 1564
LweI GCATC 4 cut(s) 352, 732, 1109, 1589
MaeI CTAG 3 cut(s) 794, 1172, 1780
MaeII ACGT 4 cut(s) 625, 1421, 1562, 1596
MaeIII GTNAC 4 cut(s) 121, 985, 1492, 1504
MalI GATC 8 cut(s) 19, 96, 210, 339, 405, 513, 579, 1757
MboI GATC 8 cut(s) 17, 94, 208, 337, 403, 511, 577, 1755
MboII GAAGA 7 cut(s) 22, 50, 125, 794, 833, 1275, 1642
MfeI CAATTG 4 cut(s) 366, 948, 981, 1149
MflI RGATCY 3 cut(s) 17, 577, 1755
MhlI GDGCHC 3 cut(s) 666, 910, 1282
MlyI GAGTC 1 cut(s) 833
MmeI TCCRAC 2 cut(s) 1240, 1702
MseI TTAA 4 cut(s) 348, 498, 1302, 1533
MslI CAYNNNNRTG 5 cut(s) 849, 1117, 1196, 1403, 1682
MspA1I CMGCKG 2 cut(s) 890, 1589
MspR9I CCNGG 2 cut(s) 248, 440
MunI CAATTG 4 cut(s) 366, 948, 981, 1149
MvaI CCWGG 2 cut(s) 248, 440
MwoI GCNNNNNNNGC 4 cut(s) 89, 773, 914, 1586
NdeII GATC 8 cut(s) 17, 94, 208, 337, 403, 511, 577, 1755
NlaIII CATG 8 cut(s) 215, 400, 470, 527, 703, 848, 1064, 1296
NlaIV GGNNCC 1 cut(s) 1519
NmeAIII GCCGAG 1 cut(s) 1674
NmuCI GTSAC 1 cut(s) 1504
NsbI TGCGCA 1 cut(s) 746
NspI RCATGY 1 cut(s) 470
OliI CACNNNNGTG 1 cut(s) 1196
PagI TCATGA 1 cut(s) 699
PciI ACATGT 1 cut(s) 466
PfeI GAWTC 5 cut(s) 601, 1090, 1321, 1480, 1704
PkrI GCNGC 3 cut(s) 217, 1177, 1579
PleI GAGTC 1 cut(s) 832
PpsI GAGTC 1 cut(s) 832
Ppu21I YACGTR 1 cut(s) 1597
PscI ACATGT 1 cut(s) 466
PsiI TTATAA 1 cut(s) 153
Psp6I CCWGG 2 cut(s) 246, 438
PspGI CCWGG 2 cut(s) 246, 438
PspN4I GGNNCC 1 cut(s) 1519
PspPI GGNCC 1 cut(s) 146
PsuI RGATCY 3 cut(s) 17, 577, 1755
PvuII CAGCTG 2 cut(s) 890, 1589
RsaI GTAC 5 cut(s) 503, 1252, 1409, 1445, 1601
RsaNI GTAC 5 cut(s) 502, 1251, 1408, 1444, 1600
RseI CAYNNNNRTG 5 cut(s) 849, 1117, 1196, 1403, 1682
SaqAI TTAA 4 cut(s) 348, 498, 1302, 1533
SatI GCNGC 3 cut(s) 216, 1176, 1578
Sau3AI GATC 8 cut(s) 17, 94, 208, 337, 403, 511, 577, 1755
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 1 cut(s) 833
ScrFI CCNGG 2 cut(s) 248, 440
SduI GDGCHC 3 cut(s) 666, 910, 1282
SfaNI GCATC 4 cut(s) 352, 732, 1109, 1589
SfcI CTRYAG 3 cut(s) 181, 891, 1759
SmiMI CAYNNNNRTG 5 cut(s) 849, 1117, 1196, 1403, 1682
SmlI CTYRAG 1 cut(s) 537
SmoI CTYRAG 1 cut(s) 537
SspMI CTAG 3 cut(s) 794, 1172, 1780
StyD4I CCNGG 2 cut(s) 246, 438
TaaI ACNGT 6 cut(s) 13, 185, 452, 912, 1255, 1498
TaiI ACGT 4 cut(s) 628, 1424, 1565, 1599
TaqI TCGA 5 cut(s) 660, 859, 1085, 1361, 1401
TatI WGTACW 4 cut(s) 501, 1407, 1443, 1599
TfiI GAWTC 5 cut(s) 601, 1090, 1321, 1480, 1704
Tru1I TTAA 4 cut(s) 348, 498, 1302, 1533
Tru9I TTAA 4 cut(s) 348, 498, 1302, 1533
TscAI CASTG 4 cut(s) 457, 724, 807, 1556
TseFI GTSAC 1 cut(s) 1504
TseI GCWGC 3 cut(s) 215, 1175, 1577
Tsp45I GTSAC 1 cut(s) 1504
TspDTI ATGAA 8 cut(s) 273, 385, 512, 688, 985, 1012, 1213, 1387
TspRI CASTG 4 cut(s) 457, 724, 807, 1556
XapI RAATTY 1 cut(s) 1738
XceI RCATGY 1 cut(s) 470
XcmI CCANNNNNNNNNTGG 1 cut(s) 126
XmiI GTMKAC 1 cut(s) 1593
XspI CTAG 3 cut(s) 794, 1172, 1780
ZraI GACGTC 1 cut(s) 1563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.