Rw7G028910

Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
39769070 .. 39774925
5856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G028910.1

Sequence Viewer

Length: 1767 bp
ATGTTCCCCACCGTTGGATCTCTCTCACTCTTCGCCTTCGCTTGTCTTCTCCTCTCCCCCATAGCCTTCGCCTCCGAGGCAGATCACAAGTATCAAACAGAAGAACCAGTTACCCTTTGGGTAAACAAAGTTGGCCCTTATAACAATCCACAAGAAACATACAATTACTACAGTCTTCCTTTCTGTCAGCCATCTGATCATGCTGCTCACAAATGGGGTGGTCTTGGTGAAGTCCTGGGTGGAAATGAACTTATTGATAGCCAGATTGACATAAAGTTCGGAAAAAATGTGGATAGGGCTACCATTTGTCAACTTGAACTTGATGATCATAAGGTTAAACAATTCAAGGATGCAATTGAGAGTAGCTACTGGTTTGAGTTTTTCATGGATGATCTGCCTTTATGGGGCTTTGTTGGTGAGTTGCACCAGGATAAGAACAGTGAAAATGGCAAACATGTTCTTTACACGCATAAAAGTATTATTATTAAGTACAATAAAGATCAGATAATTCATGTCAATCTCACTCAAGATAGTCCAAAGCCTCTGGAAGCGGGAAAAAAATTGGATCTGACTTACTCTGTCAAATGGATTTCAACCACTATCACCTTTGCACGTCGATTTGATGTTTATTTGGACTACCCATTTTTCGAGCACCAAATCCATTGGTTCTCCATTTTCAATTCCTTCATGATGGTTATATTCCTCACTGGTCTGGTGTCAATGATACTGATGCGCACTCTTAGGAATGACTATGCAAAATATGCTCGGGAAGATGATGACCTAGAGACACTGGAAAGAGATGTTAGTGAAGAGTCTGGCTGGAAACTTGTGCATGGGGATGTTTTTCGACCTCCTCGGAGTTTGGTTATTCTTTCAGCTGTAGTTGGCACGGGAGCACAGTTGGCGTTGCTCGTTCTCCTCGTCATTTTACTGGCCATTGTTGGGATGTATGTCGGGAGAGGTGCAATTGTTACAACTTTCATAGTGTGTTACGCTCTTACATCTTTCATTTCTGGTTATGTAAGTGGTGGGATGTATTCACGGCATGGGGGTAAAAACTGGATAAAGTCGATGATTCTCACAGCATCTCTATTTCCATTTATGTGCTTCGGAATTGGGTTTGTCTTGAATACAATTGCTATATTCTACGGGTCTCTAGCAGCTATACCATTCGGCACTATGGTAGTTGTCTTTGTCATTTGGGCTTTCATCTCGTTTCCTCTAGCGCTTCTTGGTACAGTTGTTGGAAGAAACTGGAGTGGTGCTCCTAATAATCCATGTCGTGTTAAAACTATTCCTCGTCCGATTCCTGAGAAAAAATGGTATTTGACGCCATCCGTGGTGTCGATGATGGGAGGACTTTTACCTTTTGGAAGCATATTCATCGAAATGTACTTTGTCTTCACGTCCTTCTGGAATTACAAGGTGTACTATGTCTATGGTTTTATGCTTCTTGTGTTTCTGATTCTCATCATTGTTACTGTATGCGTGACGATTGTGGGGACTTACTTCTTGCTTAATGCTGAGAATTACCACTGGCAATGGACGTCTTTCTTTTCTGCTGCATCAACAGCTGTGTACGTGTACTTGTATTCAATATATTACTACTATGCAAAGACGAAGATGTCAGGTTTCTTCCAGACGAGCTTCTATTTTGGATACACTCTGATGTTTTGCCTCGGCTTAGGAATCCTCTGTGGAGCTGTTGGATATTTGGGTTCAAATTTGTTTGTGAGGAGGATCTACAGAAACATCAAATGCGACTAG

Protein Analysis

588

Amino Acids

66.95

Weight (kDa)

7.55

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMP70 PF02990 53 - 545 5.1e-180 Endomembrane protein 70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10950
fragaria_vesca FvH4_5g28830
malus_domestica MD08G1236600.v1.1 MD15G1428600.v1.1
prunus_persica Prupe.1G573400_v2.0.a1 Prupe.1G573400_v2.0.a1
pyrus_communis pycom08g20490 pycom15g37960
rosa_chinensis RchiOBHm_Chr7g0221061
rosa_laevigata RLG00000002178
rosa_multiflora Rmu_sc0002105.1_g000001 Rmu_sc0012763.1_g000003
rosa_roxburghii Rroxscaffold_3G00238770
rosa_rugosa Rorug07G0200400
rosa_samantha Rh7AG339800
rosa_wichuraiana Rw7G028910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 141
AasI GACNNNNNNGTC 1 cut(s) 1624
AatII GACGTC 1 cut(s) 1550
Acc16I TGCGCA 1 cut(s) 734
AciI CCGC 1 cut(s) 551
AclWI GGATC 3 cut(s) 25, 573, 1748
AcoI YGGCCR 1 cut(s) 933
AcsI RAATTY 1 cut(s) 1723
AcyI GRCGYC 2 cut(s) 1331, 1547
AfaI GTAC 6 cut(s) 491, 1237, 1394, 1430, 1580, 1586
AfeI AGCGCT 1 cut(s) 1227
AfiI CCNNNNNNNGG 3 cut(s) 14, 404, 942
AflIII ACRYGT 2 cut(s) 454, 1581
AgsI TTSAA 7 cut(s) 317, 346, 594, 679, 1129, 1596, 1722
AjiI CACGTC 2 cut(s) 614, 1407
AjnI CCWGG 2 cut(s) 234, 426
AluBI AGCT 6 cut(s) 366, 878, 1163, 1574, 1647, 1703
AluI AGCT 6 cut(s) 366, 878, 1163, 1574, 1647, 1703
Alw21I GWGCWC 3 cut(s) 654, 898, 1267
Alw26I GTCTC 2 cut(s) 779, 1158
AlwI GGATC 3 cut(s) 25, 573, 1748
Ama87I CYCGRG 1 cut(s) 765
Aor51HI AGCGCT 1 cut(s) 1227
AoxI GGCC 2 cut(s) 133, 933
ApeKI GCWGC 3 cut(s) 203, 1160, 1562
ApoI RAATTY 1 cut(s) 1723
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
AspLEI GCGC 2 cut(s) 735, 1228
AspS9I GGNCC 1 cut(s) 134
AsuHPI GGTGA 3 cut(s) 239, 428, 595
AvaI CYCGRG 1 cut(s) 765
BaeI ACNNNNGTAYC 2 cut(s) 1227, 1260
BalI TGGCCA 1 cut(s) 935
BarI GAAGNNNNNNTAC 2 cut(s) 1385, 1417
BbsI GAAGAC 3 cut(s) 38, 167, 1393
Bbv12I GWGCWC 3 cut(s) 654, 898, 1267
BbvI GCAGC 3 cut(s) 190, 1172, 1549
BccI CCATC 4 cut(s) 199, 685, 1342, 1345
BceAI ACGGC 1 cut(s) 1058
BcgI CGANNNNNNTGC 2 cut(s) 1366, 1400
BciT130I CCWGG 2 cut(s) 236, 428
BciVI GTATCC 1 cut(s) 1652
BclI TGATCA 2 cut(s) 196, 325
BcoDI GTCTC 2 cut(s) 779, 1158
BfaI CTAG 4 cut(s) 782, 1157, 1223, 1765
BfmI CTRYAG 3 cut(s) 169, 879, 1744
BfoI RGCGCY 1 cut(s) 1229
BfuI GTATCC 1 cut(s) 1652
BglI GCCNNNNNGGC 1 cut(s) 77
BisI GCNGC 3 cut(s) 204, 1161, 1563
BlsI GCNGC 3 cut(s) 205, 1162, 1564
Bme1390I CCNGG 2 cut(s) 236, 428
BmeT110I CYCGRG 1 cut(s) 765
BmgBI CACGTC 2 cut(s) 614, 1407
BmgT120I GGNCC 1 cut(s) 134
BmrFI CCNGG 2 cut(s) 236, 428
BmsI GCATC 4 cut(s) 340, 720, 1094, 1574
BpiI GAAGAC 3 cut(s) 38, 167, 1393
BplI GAGNNNNNCTC 2 cut(s) 1249, 1281
BpmI CTGGAG 1 cut(s) 1276
Bpu10I CCTNAGC 1 cut(s) 1684
BpuEI CTTGAG 1 cut(s) 510
BsaAI YACGTR 1 cut(s) 1582
BsaBI GATNNNNATC 1 cut(s) 1469
BsaHI GRCGYC 2 cut(s) 1331, 1547
BsaI GGTCTC 1 cut(s) 1158
BsaJI CCNNGG 5 cut(s) 75, 235, 854, 1338, 1678
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 404, 942
Bse1I ACTGG 8 cut(s) 107, 374, 712, 795, 936, 1064, 1259, 1541
Bse3DI GCAATG 1 cut(s) 1547
Bse8I GATNNNNATC 1 cut(s) 1469
BseBI CCWGG 2 cut(s) 236, 428
BseDI CCNNGG 5 cut(s) 75, 235, 854, 1338, 1678
BseGI GGATG 6 cut(s) 355, 394, 844, 951, 1038, 1334
BseJI GATNNNNATC 1 cut(s) 1469
BseLI CCNNNNNNNGG 3 cut(s) 14, 404, 942
BseMI GCAATG 1 cut(s) 1547
BseMII CTCAG 2 cut(s) 1302, 1515
BseNI ACTGG 8 cut(s) 107, 374, 712, 795, 936, 1064, 1259, 1541
BseRI GAGGAG 4 cut(s) 41, 843, 908, 1750
BseXI GCAGC 3 cut(s) 190, 1172, 1549
BshFI GGCC 2 cut(s) 135, 935
BsiHKAI GWGCWC 3 cut(s) 654, 898, 1267
BsiHKCI CYCGRG 1 cut(s) 765
BslFI GGGAC 1 cut(s) 1516
BslI CCNNNNNNNGG 3 cut(s) 14, 404, 942
BsmAI GTCTC 2 cut(s) 779, 1158
BsmFI GGGAC 1 cut(s) 1516
BsnI GGCC 2 cut(s) 135, 935
Bso31I GGTCTC 1 cut(s) 1158
BsoBI CYCGRG 1 cut(s) 765
Bsp1286I GDGCHC 3 cut(s) 654, 898, 1267
Bsp143I GATC 8 cut(s) 17, 82, 196, 325, 391, 499, 565, 1740
BspACI CCGC 1 cut(s) 551
BspANI GGCC 2 cut(s) 135, 935
BspCNI CTCAG 2 cut(s) 1303, 1516
BspHI TCATGA 1 cut(s) 687
BspPI GGATC 3 cut(s) 25, 573, 1748
BspTNI GGTCTC 1 cut(s) 1158
BsrDI GCAATG 1 cut(s) 1547
BsrI ACTGG 8 cut(s) 107, 374, 712, 795, 936, 1064, 1259, 1541
BssECI CCNNGG 5 cut(s) 75, 235, 854, 1338, 1678
BssMI GATC 8 cut(s) 17, 82, 196, 325, 391, 499, 565, 1740
BssNI GRCGYC 2 cut(s) 1331, 1547
Bst2UI CCWGG 2 cut(s) 236, 428
Bst4CI ACNGT 6 cut(s) 13, 173, 440, 900, 1240, 1483
Bst6I CTCTTC 2 cut(s) 35, 804
BstACI GRCGYC 2 cut(s) 1331, 1547
BstAPI GCANNNNNTGC 1 cut(s) 761
BstBAI YACGTR 1 cut(s) 1582
BstDEI CTNAG 4 cut(s) 740, 1311, 1524, 1684
BstDSI CCRYGG 1 cut(s) 1338
BstF5I GGATG 6 cut(s) 355, 394, 844, 951, 1038, 1334
BstH2I RGCGCY 1 cut(s) 1229
BstHHI GCGC 2 cut(s) 735, 1228
BstKTI GATC 8 cut(s) 20, 85, 199, 328, 394, 502, 568, 1743
BstMAI GTCTC 2 cut(s) 779, 1158
BstMBI GATC 8 cut(s) 17, 82, 196, 325, 391, 499, 565, 1740
BstMWI GCNNNNNNNGC 4 cut(s) 77, 761, 902, 1571
BstNI CCWGG 2 cut(s) 236, 428
BstNSI RCATGY 1 cut(s) 458
BstSCI CCNGG 2 cut(s) 234, 426
BstSFI CTRYAG 3 cut(s) 169, 879, 1744
BstV1I GCAGC 3 cut(s) 190, 1172, 1549
BstV2I GAAGAC 3 cut(s) 38, 167, 1393
BstX2I RGATCY 3 cut(s) 17, 565, 1740
BstYI RGATCY 3 cut(s) 17, 565, 1740
BsuI GTATCC 1 cut(s) 1652
BsuRI GGCC 2 cut(s) 135, 935
BtgI CCRYGG 1 cut(s) 1338
BtrI CACGTC 2 cut(s) 614, 1407
BtsCI GGATG 6 cut(s) 355, 394, 844, 951, 1038, 1334
BtsIMutI CAGTG 4 cut(s) 445, 705, 788, 1534
CciI TCATGA 1 cut(s) 687
CfoI GCGC 2 cut(s) 735, 1228
Cfr13I GGNCC 1 cut(s) 134
CseI GACGC 1 cut(s) 1339
Csp6I GTAC 6 cut(s) 490, 1236, 1393, 1429, 1579, 1585
CspCI CAANNNNNGTGG 2 cut(s) 199, 234
CviAII CATG 8 cut(s) 200, 385, 455, 512, 688, 833, 1046, 1278
CviQI GTAC 6 cut(s) 490, 1236, 1393, 1429, 1579, 1585
DdeI CTNAG 4 cut(s) 740, 1311, 1524, 1684
DpnI GATC 8 cut(s) 19, 84, 198, 327, 393, 501, 567, 1742
DpnII GATC 8 cut(s) 17, 82, 196, 325, 391, 499, 565, 1740
DrdI GACNNNNNNGTC 1 cut(s) 1624
DseDI GACNNNNNNGTC 1 cut(s) 1624
EaeI YGGCCR 1 cut(s) 933
Eam1104I CTCTTC 2 cut(s) 35, 804
EarI CTCTTC 2 cut(s) 35, 804
Eco31I GGTCTC 1 cut(s) 1158
Eco47III AGCGCT 1 cut(s) 1227
Eco88I CYCGRG 1 cut(s) 765
EcoRII CCWGG 2 cut(s) 234, 426
FaeI CATG 8 cut(s) 203, 388, 458, 515, 691, 836, 1049, 1281
FaqI GGGAC 1 cut(s) 1516
FatI CATG 8 cut(s) 199, 384, 454, 511, 687, 832, 1045, 1277
FauI CCCGC 1 cut(s) 544
FbaI TGATCA 2 cut(s) 196, 325
Fnu4HI GCNGC 3 cut(s) 204, 1161, 1563
FokI GGATG 6 cut(s) 362, 401, 851, 958, 1045, 1321
Fsp4HI GCNGC 3 cut(s) 204, 1161, 1563
FspAI RTGCGCAY 1 cut(s) 734
FspBI CTAG 4 cut(s) 782, 1157, 1223, 1765
FspI TGCGCA 1 cut(s) 734
GlaI GCGC 2 cut(s) 734, 1227
GluI GCNGC 3 cut(s) 204, 1161, 1563
GsuI CTGGAG 1 cut(s) 1276
HaeII RGCGCY 1 cut(s) 1229
HaeIII GGCC 2 cut(s) 135, 935
HgaI GACGC 1 cut(s) 1339
HhaI GCGC 2 cut(s) 735, 1228
Hin1I GRCGYC 2 cut(s) 1331, 1547
Hin1II CATG 8 cut(s) 203, 388, 458, 515, 691, 836, 1049, 1281
Hin6I GCGC 2 cut(s) 733, 1226
HinP1I GCGC 2 cut(s) 733, 1226
HincII GTYRAC 1 cut(s) 311
HindII GTYRAC 1 cut(s) 311
HinfI GANTC 5 cut(s) 812, 1075, 1306, 1465, 1689
HphI GGTGA 3 cut(s) 239, 428, 595
Hpy166II GTNNAC 5 cut(s) 124, 311, 1429, 1579, 1585
Hpy188III TCNNGA 9 cut(s) 527, 545, 688, 767, 955, 1126, 1310, 1414, 1639
Hpy8I GTNNAC 5 cut(s) 124, 311, 1429, 1579, 1585
Hpy99I CGWCG 1 cut(s) 618
HpyAV CCTTC 4 cut(s) 46, 76, 694, 1420
HpyCH4III ACNGT 6 cut(s) 13, 173, 440, 900, 1240, 1483
HpyCH4IV ACGT 4 cut(s) 613, 1406, 1547, 1581
HpyCH4V TGCA 8 cut(s) 353, 424, 611, 755, 832, 965, 1565, 1613
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 761, 902, 1571
HpyF3I CTNAG 4 cut(s) 740, 1311, 1524, 1684
HpySE526I ACGT 4 cut(s) 613, 1406, 1547, 1581
Hsp92I GRCGYC 2 cut(s) 1331, 1547
Hsp92II CATG 8 cut(s) 203, 388, 458, 515, 691, 836, 1049, 1281
HspAI GCGC 2 cut(s) 733, 1226
Ksp22I TGATCA 2 cut(s) 196, 325
Kzo9I GATC 8 cut(s) 17, 82, 196, 325, 391, 499, 565, 1740
LmnI GCTCC 3 cut(s) 893, 1270, 1700
Lsp1109I GCAGC 3 cut(s) 190, 1172, 1549
LweI GCATC 4 cut(s) 340, 720, 1094, 1574
MaeI CTAG 4 cut(s) 782, 1157, 1223, 1765
MaeII ACGT 4 cut(s) 613, 1406, 1547, 1581
MaeIII GTNAC 5 cut(s) 109, 970, 989, 1477, 1489
MalI GATC 8 cut(s) 19, 84, 198, 327, 393, 501, 567, 1742
MboI GATC 8 cut(s) 17, 82, 196, 325, 391, 499, 565, 1740
MfeI CAATTG 3 cut(s) 354, 966, 1134
MflI RGATCY 3 cut(s) 17, 565, 1740
MhlI GDGCHC 3 cut(s) 654, 898, 1267
MlsI TGGCCA 1 cut(s) 935
MluNI TGGCCA 1 cut(s) 935
MlyI GAGTC 1 cut(s) 821
MmeI TCCRAC 2 cut(s) 1225, 1687
Mox20I TGGCCA 1 cut(s) 935
MscI TGGCCA 1 cut(s) 935
MseI TTAA 4 cut(s) 336, 486, 1287, 1518
MslI CAYNNNNRTG 4 cut(s) 837, 1102, 1388, 1667
Msp20I TGGCCA 1 cut(s) 935
MspA1I CMGCKG 2 cut(s) 878, 1574
MspR9I CCNGG 2 cut(s) 236, 428
MunI CAATTG 3 cut(s) 354, 966, 1134
MvaI CCWGG 2 cut(s) 236, 428
MwoI GCNNNNNNNGC 4 cut(s) 77, 761, 902, 1571
NdeII GATC 8 cut(s) 17, 82, 196, 325, 391, 499, 565, 1740
NlaIII CATG 8 cut(s) 203, 388, 458, 515, 691, 836, 1049, 1281
NmeAIII GCCGAG 1 cut(s) 1659
NmuCI GTSAC 1 cut(s) 1489
NsbI TGCGCA 1 cut(s) 734
NspI RCATGY 1 cut(s) 458
PagI TCATGA 1 cut(s) 687
PciI ACATGT 1 cut(s) 454
PcsI WCGNNNNNNNCGW 1 cut(s) 918
PfeI GAWTC 4 cut(s) 1075, 1306, 1465, 1689
PkrI GCNGC 3 cut(s) 205, 1162, 1564
PleI GAGTC 1 cut(s) 820
PpsI GAGTC 1 cut(s) 820
Ppu21I YACGTR 1 cut(s) 1582
PscI ACATGT 1 cut(s) 454
PsiI TTATAA 1 cut(s) 141
Psp6I CCWGG 2 cut(s) 234, 426
PspGI CCWGG 2 cut(s) 234, 426
PspPI GGNCC 1 cut(s) 134
PsuI RGATCY 3 cut(s) 17, 565, 1740
PvuII CAGCTG 2 cut(s) 878, 1574
RsaI GTAC 6 cut(s) 491, 1237, 1394, 1430, 1580, 1586
RsaNI GTAC 6 cut(s) 490, 1236, 1393, 1429, 1579, 1585
RseI CAYNNNNRTG 4 cut(s) 837, 1102, 1388, 1667
SaqAI TTAA 4 cut(s) 336, 486, 1287, 1518
SatI GCNGC 3 cut(s) 204, 1161, 1563
Sau3AI GATC 8 cut(s) 17, 82, 196, 325, 391, 499, 565, 1740
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 1 cut(s) 821
ScrFI CCNGG 2 cut(s) 236, 428
SduI GDGCHC 3 cut(s) 654, 898, 1267
SfaNI GCATC 4 cut(s) 340, 720, 1094, 1574
SfcI CTRYAG 3 cut(s) 169, 879, 1744
SmiMI CAYNNNNRTG 4 cut(s) 837, 1102, 1388, 1667
SmlI CTYRAG 1 cut(s) 525
SmoI CTYRAG 1 cut(s) 525
SsiI CCGC 1 cut(s) 551
SspMI CTAG 4 cut(s) 782, 1157, 1223, 1765
StyD4I CCNGG 2 cut(s) 234, 426
TaaI ACNGT 6 cut(s) 13, 173, 440, 900, 1240, 1483
TaiI ACGT 4 cut(s) 616, 1409, 1550, 1584
TaqI TCGA 6 cut(s) 616, 648, 847, 1070, 1346, 1386
TatI WGTACW 4 cut(s) 489, 1392, 1428, 1584
TfiI GAWTC 4 cut(s) 1075, 1306, 1465, 1689
Tru1I TTAA 4 cut(s) 336, 486, 1287, 1518
Tru9I TTAA 4 cut(s) 336, 486, 1287, 1518
TscAI CASTG 4 cut(s) 445, 712, 795, 1541
TseFI GTSAC 1 cut(s) 1489
TseI GCWGC 3 cut(s) 203, 1160, 1562
Tsp45I GTSAC 1 cut(s) 1489
TspDTI ATGAA 8 cut(s) 261, 373, 500, 676, 970, 997, 1198, 1372
TspGWI ACGGA 1 cut(s) 1327
TspRI CASTG 4 cut(s) 445, 712, 795, 1541
XapI RAATTY 1 cut(s) 1723
XceI RCATGY 1 cut(s) 458
XcmI CCANNNNNNNNNTGG 1 cut(s) 114
XspI CTAG 4 cut(s) 782, 1157, 1223, 1765
ZraI GACGTC 1 cut(s) 1548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.