pycom08g20500

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0012317
Physical Location & Seq
Forward (+)
20287040 .. 20287722
683 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 573 bp
ATGAAGTGGCATCAACCCTTCGGATTCGGATTGCTAGACGCGGAGAGGATTCGATTTGTAGTTGAAATAAGACCAAAAACCTCGTTCAGAGGATTGTGCCCTGATCCACAAGATTTTGCCACGTGGCAGATAAGGGTTGATCCACAATTTCCACAAGCCATCCCATTATCAACACTACTAAGCCTTTCACTCCCACTCTCTTTAGCCACAACACAAAAGCCTTGCAACCAAAGCAAACCAAAAACCATGGCAGCCACAGCAGCAGCAGCTCTCTCAAGCACCATGGTCAGCACCTCCTTCATACGCGGCCAGCCGATGACCAGCCTGCGGTTGTCCCCCAATGTCGGCCAGGCCCTTTTCGGGCTGAAGGCCAACCGCGGAGGGCGTGTGGCGATGGCTGCCTACAAGGTGAAGCTGATCACACCAGAAGGGCCACAAGAGTTTGAGTGCCCTGAGGACGTATACATTCTCGACGCGGCGGAGGAGGCAGGAATTGACCTGCCCTACTCCTGCAGGGCAGGGTCTTGCTCCTCGTGCGCCGGCAAGGTTGTGAGTGGGAGTGTGGATCAGTAG

Protein Analysis

191

Amino Acids

20.47

Weight (kDa)

8.56

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 143 - 188 1.1e-15 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10960 AT1G60950
fragaria_vesca FvH4_5g28820
malus_domestica MD08G1236800.v1.1 MD15G1428700.v1.1
prunus_persica Prupe.1G573600_v2.0.a1
pyrus_communis pycom08g20500
rosa_chinensis RchiOBHm_Chr7g0221031
rosa_laevigata RLG00000002182
rosa_multiflora Rmu_co8393539.1_g000001 Rmu_sc0002105.1_g000004 Rmu_sc0012763.1_g000009
rosa_roxburghii Rroxscaffold_3G00238810
rosa_rugosa Rorug07G0200100
rosa_samantha Rh7AG339400 Rh7BG330400 Rh7CG357400 Rh7DG338100
rosa_wichuraiana Rw7G028870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 507
AccI GTMKAC 1 cut(s) 462
AccII CGCG 4 cut(s) 41, 306, 378, 476
AciI CCGC 7 cut(s) 41, 306, 328, 376, 378, 476, 479
AclWI GGATC 2 cut(s) 98, 134
AcoI YGGCCR 2 cut(s) 307, 346
AcuI CTGAAG 1 cut(s) 386
AcvI CACGTG 1 cut(s) 123
AfiI CCNNNNNNNGG 3 cut(s) 327, 344, 360
AgsI TTSAA 1 cut(s) 65
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 2 cut(s) 269, 415
AluI AGCT 2 cut(s) 269, 415
AlwI GGATC 2 cut(s) 98, 134
AoxI GGCC 5 cut(s) 307, 346, 351, 369, 431
ApeKI GCWGC 5 cut(s) 251, 260, 263, 266, 398
AspLEI GCGC 1 cut(s) 539
AspS9I GGNCC 2 cut(s) 352, 431
AsuHPI GGTGA 1 cut(s) 421
AxyI CCTNAGG 1 cut(s) 453
BaeGI GKGCMC 2 cut(s) 101, 452
BauI CACGAG 1 cut(s) 532
BbrPI CACGTG 1 cut(s) 123
BbvI GCAGC 5 cut(s) 263, 272, 275, 278, 385
BccI CCATC 2 cut(s) 167, 388
BciT130I CCWGG 1 cut(s) 350
BclI TGATCA 1 cut(s) 417
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 511
BfuAI ACCTGC 1 cut(s) 507
BisI GCNGC 7 cut(s) 252, 261, 264, 267, 307, 399, 477
BlsI GCNGC 7 cut(s) 253, 262, 265, 268, 308, 400, 478
Bme1390I CCNGG 1 cut(s) 350
BmgT120I GGNCC 2 cut(s) 352, 431
BmrFI CCNGG 1 cut(s) 350
BmsI GCATC 1 cut(s) 19
BpuEI CTTGAG 1 cut(s) 259
BsaAI YACGTR 1 cut(s) 123
BsaJI CCNNGG 3 cut(s) 246, 282, 376
BsaXI ACNNNNNCTCC 2 cut(s) 372, 402
Bsc4I CCNNNNNNNGG 3 cut(s) 327, 344, 360
Bse118I RCCGGY 1 cut(s) 539
Bse21I CCTNAGG 1 cut(s) 453
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 3 cut(s) 246, 282, 376
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 3 cut(s) 327, 344, 360
BseMII CTCAG 1 cut(s) 444
BseRI GAGGAG 2 cut(s) 497, 520
BseSI GKGCMC 2 cut(s) 101, 452
BseXI GCAGC 5 cut(s) 263, 272, 275, 278, 385
Bsh1236I CGCG 4 cut(s) 41, 306, 378, 476
BshFI GGCC 5 cut(s) 309, 348, 353, 371, 433
BsiSI CCGG 1 cut(s) 540
BslFI GGGAC 1 cut(s) 319
BslI CCNNNNNNNGG 3 cut(s) 327, 344, 360
BsmFI GGGAC 1 cut(s) 319
BsnI GGCC 5 cut(s) 309, 348, 353, 371, 433
Bsp1286I GDGCHC 2 cut(s) 101, 452
Bsp143I GATC 4 cut(s) 103, 139, 417, 565
Bsp19I CCATGG 2 cut(s) 246, 282
BspACI CCGC 7 cut(s) 41, 306, 328, 376, 378, 476, 479
BspANI GGCC 5 cut(s) 309, 348, 353, 371, 433
BspCNI CTCAG 1 cut(s) 445
BspFNI CGCG 4 cut(s) 41, 306, 378, 476
BspMAI CTGCAG 1 cut(s) 515
BspMI ACCTGC 1 cut(s) 507
BspPI GGATC 2 cut(s) 98, 134
BsrFI RCCGGY 1 cut(s) 539
BssAI RCCGGY 1 cut(s) 539
BssECI CCNNGG 3 cut(s) 246, 282, 376
BssMI GATC 4 cut(s) 103, 139, 417, 565
BssNAI GTATAC 1 cut(s) 463
BssSI CACGAG 1 cut(s) 532
BssT1I CCWWGG 2 cut(s) 246, 282
Bst1107I GTATAC 1 cut(s) 463
Bst2BI CACGAG 1 cut(s) 532
Bst2UI CCWGG 1 cut(s) 350
BstBAI YACGTR 1 cut(s) 123
BstC8I GCNNGC 3 cut(s) 311, 326, 541
BstDEI CTNAG 2 cut(s) 179, 453
BstDSI CCRYGG 3 cut(s) 246, 282, 376
BstF5I GGATG 1 cut(s) 159
BstFNI CGCG 4 cut(s) 41, 306, 378, 476
BstHHI GCGC 1 cut(s) 539
BstKTI GATC 4 cut(s) 106, 142, 420, 568
BstMBI GATC 4 cut(s) 103, 139, 417, 565
BstMWI GCNNNNNNNGC 7 cut(s) 231, 257, 260, 266, 398, 485, 534
BstNI CCWGG 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 348
BstSFI CTRYAG 1 cut(s) 511
BstSLI GKGCMC 2 cut(s) 101, 452
BstUI CGCG 4 cut(s) 41, 306, 378, 476
BstV1I GCAGC 5 cut(s) 263, 272, 275, 278, 385
BstZ17I GTATAC 1 cut(s) 463
Bsu36I CCTNAGG 1 cut(s) 453
BsuRI GGCC 5 cut(s) 309, 348, 353, 371, 433
BtgI CCRYGG 3 cut(s) 246, 282, 376
BtgZI GCGATG 1 cut(s) 407
BtsCI GGATG 1 cut(s) 159
BveI ACCTGC 1 cut(s) 507
Cac8I GCNNGC 3 cut(s) 311, 326, 541
CfoI GCGC 1 cut(s) 539
Cfr10I RCCGGY 1 cut(s) 539
Cfr13I GGNCC 2 cut(s) 352, 431
Cfr42I CCGCGG 1 cut(s) 379
CseI GACGC 2 cut(s) 47, 482
CviAII CATG 2 cut(s) 247, 283
DdeI CTNAG 2 cut(s) 179, 453
DpnI GATC 4 cut(s) 105, 141, 419, 567
DpnII GATC 4 cut(s) 103, 139, 417, 565
EaeI YGGCCR 2 cut(s) 307, 346
EciI GGCGGA 1 cut(s) 494
Eco130I CCWWGG 2 cut(s) 246, 282
Eco57I CTGAAG 1 cut(s) 386
Eco72I CACGTG 1 cut(s) 123
Eco81I CCTNAGG 1 cut(s) 453
EcoO109I RGGNCCY 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 348
EcoT14I CCWWGG 2 cut(s) 246, 282
ErhI CCWWGG 2 cut(s) 246, 282
FaeI CATG 2 cut(s) 250, 286
FaiI YATR 4 cut(s) 248, 284, 302, 463
FaqI GGGAC 1 cut(s) 319
FatI CATG 2 cut(s) 246, 282
FbaI TGATCA 1 cut(s) 417
FblI GTMKAC 1 cut(s) 462
Fnu4HI GCNGC 7 cut(s) 252, 261, 264, 267, 307, 399, 477
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 7 cut(s) 252, 261, 264, 267, 307, 399, 477
FspBI CTAG 1 cut(s) 35
GlaI GCGC 1 cut(s) 538
GluI GCNGC 7 cut(s) 252, 261, 264, 267, 307, 399, 477
HaeIII GGCC 5 cut(s) 309, 348, 353, 371, 433
HapII CCGG 1 cut(s) 540
HgaI GACGC 2 cut(s) 47, 482
HhaI GCGC 1 cut(s) 539
Hin1II CATG 2 cut(s) 250, 286
Hin6I GCGC 1 cut(s) 537
HinP1I GCGC 1 cut(s) 537
HinfI GANTC 2 cut(s) 24, 49
HpaII CCGG 1 cut(s) 540
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 1 cut(s) 463
Hpy188I TCNGA 3 cut(s) 23, 29, 89
Hpy188III TCNNGA 1 cut(s) 470
Hpy8I GTNNAC 1 cut(s) 463
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 4 cut(s) 28, 307, 361, 422
HpyCH4IV ACGT 2 cut(s) 122, 459
HpyCH4V TGCA 2 cut(s) 225, 513
HpyF10VI GCNNNNNNNGC 7 cut(s) 231, 257, 260, 266, 398, 485, 534
HpyF3I CTNAG 2 cut(s) 179, 453
HpySE526I ACGT 2 cut(s) 122, 459
Hsp92II CATG 2 cut(s) 250, 286
HspAI GCGC 1 cut(s) 537
KroI GCCGGC 1 cut(s) 539
KroNI GCCGGC 1 cut(s) 541
Ksp22I TGATCA 1 cut(s) 417
KspI CCGCGG 1 cut(s) 379
Kzo9I GATC 4 cut(s) 103, 139, 417, 565
LmnI GCTCC 1 cut(s) 533
Lsp1109I GCAGC 5 cut(s) 263, 272, 275, 278, 385
LweI GCATC 1 cut(s) 19
MaeI CTAG 1 cut(s) 35
MaeII ACGT 2 cut(s) 122, 459
MalI GATC 4 cut(s) 105, 141, 419, 567
MboI GATC 4 cut(s) 103, 139, 417, 565
MhlI GDGCHC 2 cut(s) 101, 452
MluCI AATT 2 cut(s) 146, 492
MnlI CCTC 9 cut(s) 39, 83, 91, 304, 374, 448, 475, 478, 541
MroNI GCCGGC 1 cut(s) 539
MspA1I CMGCKG 1 cut(s) 378
MspI CCGG 1 cut(s) 540
MspR9I CCNGG 1 cut(s) 350
MvaI CCWGG 1 cut(s) 350
MvnI CGCG 4 cut(s) 41, 306, 378, 476
MwoI GCNNNNNNNGC 7 cut(s) 231, 257, 260, 266, 398, 485, 534
NaeI GCCGGC 1 cut(s) 541
NcoI CCATGG 2 cut(s) 246, 282
NdeII GATC 4 cut(s) 103, 139, 417, 565
NgoMIV GCCGGC 1 cut(s) 539
NlaIII CATG 2 cut(s) 250, 286
PdiI GCCGGC 1 cut(s) 541
PfeI GAWTC 2 cut(s) 24, 49
PkrI GCNGC 7 cut(s) 253, 262, 265, 268, 308, 400, 478
PmaCI CACGTG 1 cut(s) 123
PmlI CACGTG 1 cut(s) 123
Ppu21I YACGTR 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 348
PspCI CACGTG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 348
PspPI GGNCC 2 cut(s) 352, 431
PstI CTGCAG 1 cut(s) 515
SacII CCGCGG 1 cut(s) 379
SatI GCNGC 7 cut(s) 252, 261, 264, 267, 307, 399, 477
Sau3AI GATC 4 cut(s) 103, 139, 417, 565
Sau96I GGNCC 2 cut(s) 352, 431
SbfI CCTGCAGG 1 cut(s) 515
ScrFI CCNGG 1 cut(s) 350
SdaI CCTGCAGG 1 cut(s) 515
SduI GDGCHC 2 cut(s) 101, 452
SetI ASST 9 cut(s) 83, 125, 271, 296, 411, 417, 462, 501, 549
SfaNI GCATC 1 cut(s) 19
SfcI CTRYAG 1 cut(s) 511
Sfr303I CCGCGG 1 cut(s) 379
SgrBI CCGCGG 1 cut(s) 379
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
Sse8387I CCTGCAGG 1 cut(s) 515
Sse9I AATT 2 cut(s) 146, 492
SsiI CCGC 7 cut(s) 41, 306, 328, 376, 378, 476, 479
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 348
StyI CCWWGG 2 cut(s) 246, 282
TaiI ACGT 2 cut(s) 125, 462
TaqI TCGA 2 cut(s) 52, 471
TasI AATT 2 cut(s) 146, 492
TauI GCSGC 2 cut(s) 309, 479
TfiI GAWTC 2 cut(s) 24, 49
TseI GCWGC 5 cut(s) 251, 260, 263, 266, 398
TspDTI ATGAA 2 cut(s) 17, 289
XmiI GTMKAC 1 cut(s) 462
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.