Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0016686

Physical Location & Seq

Genomic Coordinates Reverse (-)

21036045 .. 21036296

Gene Structure 252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGGTGGGAGTAAGAAGGCGCTGGGGACGACAGGGGAGTTCTTCAGGAGGAGGGACGAGTGGAGGAAGCACCCCATGCTTTCCAATCAGCTCCGCCACGCCACTCCCGGCCTCGGCATCGCTCTCGTTGCATTCGGCGTCTACCTCGTCGGCGAGCAGGTCTACGACCGCCTCATCGCTTCCTCCCCCTCCTCCTCCTCCTCGCATCACGCCCACTCTCATTCTGTCTCTTCAACCTCCGCTACTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NDUF_B12

Protein Analysis

84

Amino Acids

8.99

Weight (kDa)

10.15

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDUF_B12	PF08122	17 - 64	6.2e-08	NADH-ubiquinone oxidoreductase B12 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14450 AT1G14450 AT2G02510
fragaria_vesca	FvH4_5g27520
malus_domestica	MD08G1249300.v1.1 MD15G1444100.v1.1
prunus_persica	Prupe.1G586500_v2.0.a1 Prupe.1G586500_v2.0.a1
pyrus_communis	pycom08g21580
rosa_chinensis	RchiOBHm_Chr7g0218891
rosa_roxburghii	Rroxscaffold_3G00240420
rosa_rugosa	Rorug07G0179500
rosa_wichuraiana	Rw7G027330 Rw7G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	148
AccI	GTMKAC	2 cut(s)	141, 162
AciI	CCGC	3 cut(s)	94, 169, 240
AcuI	CTGAAG	1 cut(s)	28
AcyI	GRCGYC	1 cut(s)	138
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	234
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	232
AoxI	GGCC	1 cut(s)	109
AspLEI	GCGC	1 cut(s)	22
AsuC2I	CCSGG	1 cut(s)	108
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	232
BfoI	RGCGCY	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	2 cut(s)	126, 214
BpuMI	CCSGG	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	112
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseRI	GAGGAG	5 cut(s)	64, 181, 184, 187, 190
BseYI	CCCAGC	1 cut(s)	22
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	1 cut(s)	111
BsiEI	CGRYCG	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	2 cut(s)	40, 68
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	1 cut(s)	232
BsmFI	GGGAC	2 cut(s)	40, 68
BsmI	GAATGC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	111
BspACI	CCGC	3 cut(s)	94, 169, 240
BspANI	GGCC	1 cut(s)	111
BspMI	ACCTGC	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	112
BssNI	GRCGYC	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	235
BstACI	GRCGYC	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	155
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	232
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 128
BstSCI	CCNGG	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	111
BtgZI	GCGATG	2 cut(s)	103, 160
BtsIMutI	CAGTG	1 cut(s)	247
BveI	ACCTGC	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	155
CfoI	GCGC	1 cut(s)	22
CseI	GACGC	1 cut(s)	127
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	2 cut(s)	91, 111
CviKI_1	RGCY	2 cut(s)	91, 111
Eam1104I	CTCTTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	235
EciI	GGCGGA	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	28
FaeI	CATG	1 cut(s)	79
FaiI	YATR	1 cut(s)	77
FaqI	GGGAC	2 cut(s)	40, 68
FatI	CATG	1 cut(s)	75
FblI	GTMKAC	2 cut(s)	141, 162
GlaI	GCGC	1 cut(s)	21
GsaI	CCCAGC	1 cut(s)	26
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	1 cut(s)	108
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	1 cut(s)	22
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HpaII	CCGG	1 cut(s)	108
Hpy166II	GTNNAC	2 cut(s)	142, 163
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	2 cut(s)	142, 163
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	10
HpyCH4V	TGCA	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 128
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	1 cut(s)	20
LmnI	GCTCC	1 cut(s)	96
LpnPI	CCDG	5 cut(s)	8, 18, 31, 121, 143
LweI	GCATC	2 cut(s)	126, 214
MboII	GAAGA	2 cut(s)	34, 222
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	108
Mva1269I	GAATGC	1 cut(s)	131
MwoI	GCNNNNNNNGC	2 cut(s)	76, 128
NciI	CCSGG	1 cut(s)	108
NlaIII	CATG	1 cut(s)	79
NmeAIII	GCCGAG	1 cut(s)	93
PctI	GAATGC	1 cut(s)	131
PspFI	CCCAGC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	108
SetI	ASST	4 cut(s)	93, 147, 162, 239
SfaNI	GCATC	2 cut(s)	126, 214
SsiI	CCGC	3 cut(s)	94, 169, 240
StyD4I	CCNGG	1 cut(s)	106
XmiI	GTMKAC	2 cut(s)	141, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.